GBrowse Details

Vigan.01G296400.01

Basic Information:
Name: Vigan.01G296400.01
Multiple alignment
Variant Information
Position: Chr01:42193130..42197429 (+ strand)
Length: 4300
Functional Information:
Description: Similar to Syntaxin. [Q8LJR4, Glycine max]
GO: Biological Process: intracellular protein transport (GO:0006886)
Biological Process: vesicle-mediated transport (GO:0016192)
Cellular Component: membrane (GO:0016020)
Molecular Function: SNAP receptor activity (GO:0005484)
Molecular Function: protein binding (GO:0005515)
InterPro: Target SNARE coiled-coil domain (IPR000727)
Syntaxin, N-terminal domain (IPR006011)
Syntaxin/epimorphin, conserved site (IPR006012)
t-SNARE (IPR010989)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:113.27,50.53,19.44,26.29,25.10,31.12,38.03,22.67
Structure :
Position: Chr01:42193130..42193368 (+ strand)
Length: 239
Type: five_prime_UTR
Position: Chr01:42193369..42193556 (+ strand)
Length: 188
Type: CDS
Position: Chr01:42194182..42194275 (+ strand)
Length: 94
Type: CDS
Position: Chr01:42194558..42194697 (+ strand)
Length: 140
Type: CDS
Position: Chr01:42194943..42195017 (+ strand)
Length: 75
Type: CDS
Position: Chr01:42195583..42195740 (+ strand)
Length: 158
Type: CDS
Position: Chr01:42195858..42196069 (+ strand)
Length: 212
Type: CDS
Position: Chr01:42196070..42197429 (+ strand)
Length: 1360
Type: three_prime_UTR

>Vigan.01G296400.01 class=Sequence position=Chr01:42193130..42197429 (+ strand)
CGTGTTTGAA GAGCGCGTCC ACGCCAATGT AGCGGCAGGG AATTACAACC ATAGAGACCC ACCGAAGAAA CTACCTCACG
GAATCCAAAT CTTCGTTCGC TTCCCTTTTC TTGCATTGCC CTAATTCCTC AAATTCCCCT CTCTTTATTC TCCCAGATCC
CGGTAAACGC CTCCTTCGCC TTTTCCCTCC CTTTCTCAGG AAAATTCTCC CAATTTTCTC GAGAAAGTGA AACGGAATTA
TGAGCTTTCA GGACATCGAG GCTGGTCGGC CCTTCGGTTC CAGGCGTGGC TTGACCAACG GCAAGCAGGA CCCCACGCAG
GCAGTGGCTG CCGGAATATT CCAGATCAAC ACCGCCGTCT CCACCTTCCA GAGACTCGTC AACACCCTCG GAACCCCCAA
AGATACCCCC GAGCTCCGTG AGAAGCTGTT AGTTCTTCAT CATCACACTC AATTTCTTTG ATTTCAGCTA ACTGATCGTT
ATTGACTTTT TATTTTCCGA AGAAAAAGAT AAAGAAACGT TCCTTCCCCC CTTTCCCCCC TTCAACATCA AAATTGTCGA
ATCAGCTGAA TGGCCGCTCG AATTACAATA TTTCCATGTT GCTTGGCGTT TTGGGGATCG TTTTCGTTTA GATGGGCTAA
GTTTGGGTTT TTTTTCGATT GAATTGCAGC GGACCTTTAT TTTTTGGGAA GAATGATCAA AATTGCTATT TCTGATGCTT
TGATCGAGGT TATATTTCTT CTTGTTGTTT CTCTAGTCGG GATTAAGATA TATAGTGATA TGCTAATTTT TCAACTCAAG
AACAGGACAT TCTATGTAAT GGAATATTTG GTGATTATAA TGTTAAGTAG TTATACTTTT ATAGAAGGTA GCTTCGTGAT
TCAAAGTAGT TAACAGATGA AGCCGAGGGA TGTTGGGAAT CTGAACTCTT TTTTTAGCCT TGCAAAGTGG ACACTGTCCC
TCTTGTATAT TAAGTTTTGA TTTAGTAGAA CAAGGACCTC TTTTGCTATT ACTGTGGTTG ACTAATATTT TAACCTATTT
TAAAACTTAC AGCCACAAGA CAAGACTACA TATTGGGCAA TTGGTGAAGG ATACATCAGC TAAACTTAAG CAAGCCAGTG
ACATTGATCA CCATGCTGAA GTTAATGTAA GTTTGAACCT TGATCTTGTG TTTTACTGCA TCTGAACGAG CAGTTTGTTT
ATTTGGTCCC CGTCTCAGTA TTTTGTGATT GTCTTCCAAA ATGCATTAAC TCCTCTGAAT ACTATTATTA CTTATATTAT
TGCGGTCATT TTTACTGGAT TGGTAATTTT ATAATCAATC TGCATCATTC TTTTAAAGAA TACTATGAAA GTTTGTGACA
GGCAAATCCT TTGTATGGTT GCATGATCTT CAATGCCTTT TACCTAAAAG TTTTTCTTAT TTTTGCAGGC AAGCAAGAAG
ATCGCAGATG CTAAACTTGC GAAAGATTTT CAAGCAGTAT TGAAAGAGTT TCAGAAGGCA CAACGTCTTG CAGCTGAAAG
GGAAACAGCA TACACTCCTT TTGTTCCCCA AGCAGTCCTT CCTTCCAGGT GATTTATCAA TTATAATTAG AGCCTATAGA
AGTTTAGGGG CAAGACTGTG TTTCTCCTTT GTTTTGAAGT GTATGGCTTA TGCAGAATGG GACCTGTTTT AGATTAGGCT
ACATTTAGAA TTTTGCAGTT TAATATTATG CAATTGGTTT CTAGGTTATC GATTCTTCTT CTGTAATCAC TGCCAGTGTA
TAATATACCT TTGCAAACAA TGGTATGACG GAGATTTTCC TTTGGGCTTG CAGCTATACT GCTGGTGAAT TAGGTGTTGG
TCCTGATAAA TCACCAGAAG AGCGTGCCTT ACTCGTGGAA TCAAGGAGGT ATTTTCTCAT TTATGATTAG TAGTATGTCA
GTGATTTGCA GATTCATTTT GTGTATTATT GATCTATTTC CAATATATGG TGTGGAAAAG CAATTTTTGA AATGTAATAT
TGGGTCAATG ATCAGGATTA TTAACCATTT GAAATTTGGA ATTGGTGAAA AATAGGATGC CTTTATTTAT TGTTTCATCC
TTGGTGGTTC GAAGGAGCTG GAATCATGAA TTGATCGTGG CTACATTGTT AAGTTTGATT GGACAACTGA ATGTCAATTG
TTTATCCTGA AAAAGGAAAT CTTTCCATTT TAGCTGTTGG AGTACCACAT ATTCATCTGC AACATACTAT TATCCTGAAA
ATAATTGATA TCAACTACCA AAAGCTCCCT TCTTCCCGCT TTTTTTCTCT TATAATGCTC TGGTGTAATG AAATTGGTGG
CATAATCAAT GTTAGAATTA TCCGTTTTGT CTCTAAAGTA GATGAATAAT TGAATTTATG CGTTATCAGA GTTTTCAAAT
TTTCTACATT GCATCATTTC AGTACCTTAG CTCTTGTTTT ATTCATGCTG CAGGCAGGAG GTTTTGTTCT TAGATAATGA
GATTGCTTTT AACGAGGCCA TCATTGAGGA AAGGGAGCAA GGCATTCAAG AAATACAGCA GCAAATTGGT GAAGTTAACG
AGATCTTCAA AGATCTTGCT GTGCTTGTCC ATGAGCAAGG AACCATGATT GGTATTTTTT TTCATTCCCT TTTATTTTTC
TGATTGTGCA CATTTTATAT CGCTGTATAC AAATTTATTT TTCCGTATTT GTTCATGTTC TCTAATGCAA CTAAATTTCA
TTTTACAGAT GATATTGGCT CCAACATTGA GAACTCCCAT GCAGCAACAG CACAAGCAAA ATCTCAACTT TTAAAAGCTT
CAAAGACCCA AAGATCAAAT TCCTCTTTGG TAATGTATCA ATTTCTAATT GCCACAAAAT TACTATACTC AACCTCCTTC
CATGAAATGA CTTTTTATAT GTGGAATCTC CAGAGGAGAT ATCTTCTAAA GAGGGTTTGA CTAATGGCCC TGACCACAGA
ATGGAATTTG ATTTAAAAAT GATTTTGTAT TGACTTGTTG TGCTGATGTA TTTACTTGCA AAATTAAATT TATTATGATT
ACAGTACATG ACACGTATTT TGGAAATAAC AATGGATTTA TTTGAATAAA CTCCTCCACA AGAAGAAAAT ACGAAGGAAA
AATTAATTGA ACTTATATAA ATTTAAACTA GTTTACGGAT AAGCTAATAT GTAGAATTTC TCAAAAATAT TTTTAACTTG
TGCATGAACT AATTTTACAT TATGGAGAAA AGTTTATTTC ATTTTATATT ATTTTCTTCT TCTAGAAATA CTTATAGAGA
AACGTATTCT GAACATACTA TACATGCAGC TTAAATCTTT GTAGGTGGAT TAGCCTGTAA TTTTGTCTAT TATTATCAGT
TTGCACATTG CAAACAATAT TTGTTTTCCA TTTTGAAAGT AGGATTATTG CATCGTTGTC ATAATATGGA AGGGAAGAAG
TGGTTGATGG AATAAGTAAT AGCTTATGTA ATTTCCTACT TAAAGGAGTT ATCATAGACT GTCTACCATC TTGAAAGACT
TGTTTGTACA TCGTTGGTCA ATGTTTAGTC TTTTTTTCAC CCTTTTGAAA TCTTGGTGTA TTTCCCTTGT TAACCTTGTG
CTCTTTTATT TTCTCCATAG ACATGCTTGC TTTTGGTGAT TTTTGGGATT GTGCTTCTGA TCGTGATCAT AGTTCTTGCT
GCTTAGACAA ATATTGTCTC AATTCCATTA TGAAGTAAAT GCATATATAC AGAGCAGCAG ATATCATCTT CCTTGCTGAA
GATATAACTT GATCGGTGTT TTGTTGGATC TGGCGATTGA CTGGAGTTTG TTGCATCTGA TTTCAGTACA AGATGTGGGA
ATTCCCATGA TTTTGTTGTG GGATGTTATG TTCTCTCTAT ATGTTAGTGT TTGGGGTTTT CAAATTTGTC ACGACTTATG
TTGTAAGTTC TCTCCTTGTT TCTTTAATTG AAAAGGTATT AATTCTTTCA TTTCCCTTGT AAATGCAACA CTGAAACTGG
CTGGTTGTGC TGACTAATCA GTAAAACCTT CGTATATGGT AATATGTTTC TCTTTTAGTG TTTTTCTTTC CCAAAGTTGG
AACTGTAATG TGTATGAAGA AAAAATTTGG ATGTGTTTGA TGAGTTTATT CGGTGAGTGA CATTTATTTA TTCGTGTGGG
GGAAATTTCT CGTCTGTGTA TTCTGAAAGC CCAAAAGGCA AGGAAGGTGT GGAAAATTGC TTTAGTTTTA GTATTTATTT
TTTTAGATAA CGGAAACCCT TTTTCATTCG AAGGTAAAAT TCATACTTCT AAGATTGGCC 

>Vigan.01G296400.01
CGTGTTTGAA GAGCGCGTCC ACGCCAATGT AGCGGCAGGG AATTACAACC ATAGAGACCC ACCGAAGAAA CTACCTCACG
GAATCCAAAT CTTCGTTCGC TTCCCTTTTC TTGCATTGCC CTAATTCCTC AAATTCCCCT CTCTTTATTC TCCCAGATCC
CGGTAAACGC CTCCTTCGCC TTTTCCCTCC CTTTCTCAGG AAAATTCTCC CAATTTTCTC GAGAAAGTGA AACGGAATTA
TGAGCTTTCA GGACATCGAG GCTGGTCGGC CCTTCGGTTC CAGGCGTGGC TTGACCAACG GCAAGCAGGA CCCCACGCAG
GCAGTGGCTG CCGGAATATT CCAGATCAAC ACCGCCGTCT CCACCTTCCA GAGACTCGTC AACACCCTCG GAACCCCCAA
AGATACCCCC GAGCTCCGTG AGAAGCTCCA CAAGACAAGA CTACATATTG GGCAATTGGT GAAGGATACA TCAGCTAAAC
TTAAGCAAGC CAGTGACATT GATCACCATG CTGAAGTTAA TGCAAGCAAG AAGATCGCAG ATGCTAAACT TGCGAAAGAT
TTTCAAGCAG TATTGAAAGA GTTTCAGAAG GCACAACGTC TTGCAGCTGA AAGGGAAACA GCATACACTC CTTTTGTTCC
CCAAGCAGTC CTTCCTTCCA GCTATACTGC TGGTGAATTA GGTGTTGGTC CTGATAAATC ACCAGAAGAG CGTGCCTTAC
TCGTGGAATC AAGGAGGCAG GAGGTTTTGT TCTTAGATAA TGAGATTGCT TTTAACGAGG CCATCATTGA GGAAAGGGAG
CAAGGCATTC AAGAAATACA GCAGCAAATT GGTGAAGTTA ACGAGATCTT CAAAGATCTT GCTGTGCTTG TCCATGAGCA
AGGAACCATG ATTGATGATA TTGGCTCCAA CATTGAGAAC TCCCATGCAG CAACAGCACA AGCAAAATCT CAACTTTTAA
AAGCTTCAAA GACCCAAAGA TCAAATTCCT CTTTGGTAAT GTATCAATTT CTAATTGCCA CAAAATTACT ATACTCAACC
TCCTTCCATG AAATGACTTT TTATATGTGG AATCTCCAGA GGAGATATCT TCTAAAGAGG GTTTGACTAA TGGCCCTGAC
CACAGAATGG AATTTGATTT AAAAATGATT TTGTATTGAC TTGTTGTGCT GATGTATTTA CTTGCAAAAT TAAATTTATT
ATGATTACAG TACATGACAC GTATTTTGGA AATAACAATG GATTTATTTG AATAAACTCC TCCACAAGAA GAAAATACGA
AGGAAAAATT AATTGAACTT ATATAAATTT AAACTAGTTT ACGGATAAGC TAATATGTAG AATTTCTCAA AAATATTTTT
AACTTGTGCA TGAACTAATT TTACATTATG GAGAAAAGTT TATTTCATTT TATATTATTT TCTTCTTCTA GAAATACTTA
TAGAGAAACG TATTCTGAAC ATACTATACA TGCAGCTTAA ATCTTTGTAG GTGGATTAGC CTGTAATTTT GTCTATTATT
ATCAGTTTGC ACATTGCAAA CAATATTTGT TTTCCATTTT GAAAGTAGGA TTATTGCATC GTTGTCATAA TATGGAAGGG
AAGAAGTGGT TGATGGAATA AGTAATAGCT TATGTAATTT CCTACTTAAA GGAGTTATCA TAGACTGTCT ACCATCTTGA
AAGACTTGTT TGTACATCGT TGGTCAATGT TTAGTCTTTT TTTCACCCTT TTGAAATCTT GGTGTATTTC CCTTGTTAAC
CTTGTGCTCT TTTATTTTCT CCATAGACAT GCTTGCTTTT GGTGATTTTT GGGATTGTGC TTCTGATCGT GATCATAGTT
CTTGCTGCTT AGACAAATAT TGTCTCAATT CCATTATGAA GTAAATGCAT ATATACAGAG CAGCAGATAT CATCTTCCTT
GCTGAAGATA TAACTTGATC GGTGTTTTGT TGGATCTGGC GATTGACTGG AGTTTGTTGC ATCTGATTTC AGTACAAGAT
GTGGGAATTC CCATGATTTT GTTGTGGGAT GTTATGTTCT CTCTATATGT TAGTGTTTGG GGTTTTCAAA TTTGTCACGA
CTTATGTTGT AAGTTCTCTC CTTGTTTCTT TAATTGAAAA GGTATTAATT CTTTCATTTC CCTTGTAAAT GCAACACTGA
AACTGGCTGG TTGTGCTGAC TAATCAGTAA AACCTTCGTA TATGGTAATA TGTTTCTCTT TTAGTGTTTT TCTTTCCCAA
AGTTGGAACT GTAATGTGTA TGAAGAAAAA ATTTGGATGT GTTTGATGAG TTTATTCGGT GAGTGACATT TATTTATTCG
TGTGGGGGAA ATTTCTCGTC TGTGTATTCT GAAAGCCCAA AAGGCAAGGA AGGTGTGGAA AATTGCTTTA GTTTTAGTAT
TTATTTTTTT AGATAACGGA AACCCTTTTT CATTCGAAGG TAAAATTCAT ACTTCTAAGA TTGGCC

>Vigan.01G296400.01
ATGAGCTTTC AGGACATCGA GGCTGGTCGG CCCTTCGGTT CCAGGCGTGG CTTGACCAAC GGCAAGCAGG ACCCCACGCA
GGCAGTGGCT GCCGGAATAT TCCAGATCAA CACCGCCGTC TCCACCTTCC AGAGACTCGT CAACACCCTC GGAACCCCCA
AAGATACCCC CGAGCTCCGT GAGAAGCTCC ACAAGACAAG ACTACATATT GGGCAATTGG TGAAGGATAC ATCAGCTAAA
CTTAAGCAAG CCAGTGACAT TGATCACCAT GCTGAAGTTA ATGCAAGCAA GAAGATCGCA GATGCTAAAC TTGCGAAAGA
TTTTCAAGCA GTATTGAAAG AGTTTCAGAA GGCACAACGT CTTGCAGCTG AAAGGGAAAC AGCATACACT CCTTTTGTTC
CCCAAGCAGT CCTTCCTTCC AGCTATACTG CTGGTGAATT AGGTGTTGGT CCTGATAAAT CACCAGAAGA GCGTGCCTTA
CTCGTGGAAT CAAGGAGGCA GGAGGTTTTG TTCTTAGATA ATGAGATTGC TTTTAACGAG GCCATCATTG AGGAAAGGGA
GCAAGGCATT CAAGAAATAC AGCAGCAAAT TGGTGAAGTT AACGAGATCT TCAAAGATCT TGCTGTGCTT GTCCATGAGC
AAGGAACCAT GATTGATGAT ATTGGCTCCA ACATTGAGAA CTCCCATGCA GCAACAGCAC AAGCAAAATC TCAACTTTTA
AAAGCTTCAA AGACCCAAAG ATCAAATTCC TCTTTGGTAA TGTATCAATT TCTAATTGCC ACAAAATTAC TATACTCAAC
CTCCTTCCAT GAAATGACTT TTTATATGTG GAATCTCCAG AGGAGATATC TTCTAAAGAG GGTTTGA

>Vigan.01G296400.01
MSFQDIEAGR PFGSRRGLTN GKQDPTQAVA AGIFQINTAV STFQRLVNTL GTPKDTPELR EKLHKTRLHI GQLVKDTSAK
LKQASDIDHH AEVNASKKIA DAKLAKDFQA VLKEFQKAQR LAAERETAYT PFVPQAVLPS SYTAGELGVG PDKSPEERAL
LVESRRQEVL FLDNEIAFNE AIIEEREQGI QEIQQQIGEV NEIFKDLAVL VHEQGTMIDD IGSNIENSHA ATAQAKSQLL
KASKTQRSNS SLVMYQFLIA TKLLYSTSFH EMTFYMWNLQ RRYLLKRV*