GBrowse Details

Vigan.01G284700.01

Basic Information:
Name: Vigan.01G284700.01
Multiple alignment
Variant Information
Position: Chr01:40524542..40528976 (- strand)
Length: 4435
Functional Information:
Description: Similar to Uncharacterized protein. [I1KLV7, Glycine max]
GO: Molecular Function: protein dimerization activity (GO:0046983)
InterPro: Myc-type, basic helix-loop-helix (bHLH) domain (IPR011598)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:4.25,4.48,20.54,26.37,197.52,17.72,89.59,20.45
Arabidopsis thaliana homolog: AT1G05710.2
Automatic updates:
Name: KT031098 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max clone HN_CCL_42 bHLH transcription factor (Glyma02g15520.1) mRNA, partial cds.
PubMed ID: 26268547 NCBI(pubmed)
Status: Known Variant
Name: NM_001248668 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527660 (LOC100527660), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:40524542..40524848 (- strand)
Length: 307
Type: three_prime_UTR
Position: Chr01:40524849..40525004 (- strand)
Length: 156
Type: CDS
Position: Chr01:40525504..40525551 (- strand)
Length: 48
Type: CDS
Position: Chr01:40525728..40525793 (- strand)
Length: 66
Type: CDS
Position: Chr01:40525983..40526048 (- strand)
Length: 66
Type: CDS
Position: Chr01:40526472..40526597 (- strand)
Length: 126
Type: CDS
Position: Chr01:40528554..40528595 (- strand)
Length: 42
Type: CDS
Position: Chr01:40528596..40528976 (- strand)
Length: 381
Type: five_prime_UTR

>Vigan.01G284700.01 class=Sequence position=Chr01:40524542..40528976 (- strand)
TTTTGACATT AACCTGTTCC TCCTTCTTCT TCTTCTCCTT CTTCTTTCTC CACAACAAGC CACACACGCC TCTGTATTAT
TTTTTTCTCA GCTTCACTTT CTTTTCCTCC ATTTATGAGG TTTCACTAGT TTTTCTTTCT AGGATCAGTA CTTCACTTCT
TTCATTGTCC CATATATGCC TCTGTTCCCC ACACTGCATG CTACTTTTTC TAAGTTTTTG AATTTTCTTA CCATAGTATT
GCAATGAAAT TCTAATCACA GGCACTGCTT AAAGTTTCAA GCTTTGCAAC TTTTGGAAGA TACCCATCTA ACCATTTCAG
TTGCCTAAGG AAGGGGTTTT GGTTTCAACC ATTCCTGCTT TTACCTCCAA AAGGGTCATA GATGATAGCC AGCTCTTTCT
GCAATGCTGA TTCTATGTTT TCAGTAAGTT CTTAACCTAA ATTTAGTACC ATTTGTCTTT TTTGTCTTTC AAGTGTTATC
CCGTGTTCTC ACTTTTCATG GAAGTTATTA GTGAATGAGT TTTTCGGTGG AAAACTTCTA GAATTTGTGA TCAAAATTGT
TGTGTTTTAT CTACCTCTCT AATCGTCATC AATCCTTGCA CTCCAATTCC GAGAGAATTA TGATCAGAAT TGTTCTTGTT
GAAAGTACAT ATGTAATAAA TGAGTGGTTG AGCCTATATT TTATTGGTAT TTTTGATTTA CTAAACCCCA ACTCCAAAAC
CAACCCTGTG ATTCTCTCTC TGGATTAACC ATTGTCTTTT TCCGGAAATT AATTAATCAC TCCTGTGTCC TTATGCATGT
TGTCAATTAA GATATCCTTT AACATTAAAC AAAGGTGGTT GGGAAGATTT TGTACGCAAG TTAGATTCGT TCATGCAAGG
TGTATGTATG TGTGAATGCG TGTGTATGTG TGTGCTTACA ATCTCTTTTT CAGAAATCAA ATGGTGGCCC CCCCACATTT
GAGGTTCTGG ACACATCACA AAGATAGAAA TTTTTTATTG ATTACAATTA AAATAAACAA AAGAAAATCA ATAATTTAAC
AATAATTTTG GCATGGTATG TAAGCTCACA ATGTTGACTA GACTATTCTG GGATTAAGAT ATTTGAACCA TTAATAAAGT
TGTAAACCAA ACCATTGAAT ACGGTGATCA ATGTTTGTGA CAGTGATGAC CTTTGGAAGG TTTGTATTGT GGCTTATGTG
GTTTGAATAT GCATGGATGG TTCATTTTCT GTTGGCAGTT CTTTTCTTTG TAGTGTAGCA TCATGGCTAT GCCTATGGGG
CCACGTTTTG ATTTTCGGTT GTGGTGTAGC TGTTACCAGT TTGTATTCTG AACTTATCTC ATATATTTAA TAAATGGTCC
TGTTTTACAG TGTCAGCATT GTTCTGACTG AAGAGTGCAT GTTGGTATGA GTTCATGATG TATTATTAAT GTAAAAAATC
AATCTTGTAA CTAGCAGTAT TATTTTTTGC AAGCAAAGTT TGAGGATACA TATTTATGGA TGGAAATCAT TTCTTCTCAT
TTATTGTCTC ACTACTTAAA ACGAGACTCT TCATTGCACA AAGTTTTTTT TTTTTCCTTT TCAACAGTAG CACTCTCTCT
CTATATATGT GTTCTGTGTT ACATGTATGC ATGGCAGGAC CCTAGAGCAG AAGCAAACAC TGCCATATGG GAGGGAAAAA
ATTTCCTCTT TATTGGAGAA GTGTTTGAAA TTTGATAAGC TTTCATCAAA TGAAGGCATT AGTTTGACTT TGGTCCTTGT
TTCCTGTCAG TTTTATTTTT TATGCTTTTC TAACTTCTTT CATGGAGGGA CAAGGTTTTG AATTCTGATT GTGTTCTTTG
ACAAAAAATT GTTGTGGTTT TTGAAGTTGT GAAAAAATGC AACTGGGGCA GCCAGAGTTG CAGTTGTGAT CTGATTGCAG
TGAAAACCTT ATGTTGCAGC TGAAATTACA GTTCAGAGAG GGTGCTGATG GCAGATTTAT TCAAAGAACT GTTTGCTCAT
TCAATAGATT ACCCCAACTT TTTTTTATCT CCTGTAAATG GATGACAATC ATACTGAACT AGGGGCCAAA AGACTGTAAC
TATGGAACCA GTGGGACCAA CCCACATTGA CTCCAATTTG TATTCAGTAC TTCCTCAATT TGTGGCTTTT GGCTTCCCCA
AAGTTCTGTT GAACATGTTT CAAGCATAAA AGTAACTAAA ATATATATGG TAGTAATTAC TGTGTGTGTT GAATATGAAC
TATAGTTGTG TGTCTGACAA CTATTATACT CAAGTAAGAG AAAGTGTTGA TGATTTGATA GTTTCTTTTA TAATCTGTAT
TCCTCTTTTC ATTTTGTTCA TCCTTCTTAT ACAAGATGTT TCATTGTTGA TGCCACCAGA GAGAAGAGGG GATAGATGTT
AGAAAGATGA TGGAGCATAA AAGGAGTCCC TGCTCTGTTG ACCAAAGCAG TTATACTTCT ATTGCATCTA AAAGGCAAAA
GGCTGATTTA TCTATCAGCA CTAAGGTTTC TTTTTTTCTC CTTCTGTTGT TCTTGGCTGC TGAATTACAC TTCTATTTCA
TTTTCCTTTT TTCTTTTGAG CATCTACTTA TATATTTTTA TAGATATCCA AGCTTTACTA TTTGAAAGTT TTCATCTAGA
ATCATGCAAT GGTGCCTCTT CTGATCTTCT CTATATAAAC TCTCTTGTTC GTAGCTTGTA ATCTATGAAT TGCCACATAT
TACATTTGTG TTTCTTATCA TGCATAGCAT AATTTCAAAC CTTGAATAGG ACTGTCTGTC TTATGTTAAC CTGCATAATT
TCAACCTGTT ACATGGAACT CTCCTTGATA CTCAATTTGG ATATGTGATT TTCTTCTAAA TTGAAGGTTT ACTTTCTTCT
TTATTTCTTT GATTTTTCAT GTAACATTTC CAATGTTTCT GTGGATAGGA GAGGAAGGAG AAGATTGGGG AACGAATTGT
TGCTCTTCAG CAGCTTGTTT CACCATATGG AAAGGTATAC AACAACTATA GTTCCTGACG CAATAACAAC TTATAAATTT
GATGCTCGTC AAGCTCATTC TTGAATGAAA TAAAACTAAG AACTGCTTAT TTGAGTTATA TGATATGTTA TGTTATGTTT
TTGGATTGAA TGAATTGTTC TTTAGTTTCT CTGAGCTTAA AGAGTCTCTA CTTCTCACTG CAGACAGATA CATCTTCTGT
TCTAAAGGAG GCAATGGAAT ACATAGGATT CCTTCATAAA CAAGTTAAGG TTTGGCCATT CTTGCTACAT TATGCTGAAA
TTATCACTGT TAATATTCTA GTAATTGGTT TCATATATAG CAAACATACA TACTTGGTTT GGACCTAAAA AGACATTACA
GATTCTAAAT CATGTTTAAC AAGACCTTGA TCTTATGCAA TTTTTTTCTC TTCCTTTTTT GGCAGCTGCT CAGTGCTCCA
TATCTTGAAA CTTCAGCAGC AGCCAAGATG CAGGTAAGCA TAACGTGAAC ACTCTCACCA TGGATTAGCA AACGGATGAG
GTCACACATT TTCTTGTGGG GGCGTTCAGC ATCAAATTCA TGAAACATTT ATCATACCCA CAAGAACCCT TGTCTCTACC
ATTCTTATTG TCGATTCATA TGCTATGTTA TAAAGTGGCC ACATCTCCCC CTGTTAAGTT TCATATATAT ATATAATATA
TATATATATA TATATATATA TATATATATA TATATATATA TATTCACACA GTTTTTTTTA TGTAAATACA GGAATTGATG
TGCTTATTTG AGAGCAACCC AAGAGTAAAA ATGTAATATT TCATTGAAAA CTGACAAAAT CAACCAATTT AAAAAGAACT
GCAGAGTAAA AATACAATAA TTTTGGAACA AGAGAGTACT ATGTAGCATG ACTTTCTTGC AAATCATGAA TGAAACCTTG
ATTAATGAAA GCAGTTCAAT TGGTGGTTAT AATTGAGTTT TTGCCATTTC AGGGTATGGA AGCATGCAGC CTGAGGAGTA
GAGGGTTATG CCTTGTTCCT GTGTCATTTA CAATTGGAGT TGCTGAGAGC AATGGTGCAG ATATCTGGGC TCCCATTAAA
ACTACAACTT CACCTAAATT GGAGAATGAT GTGTCTCAAT TTCATTGACA AAGTTTCTCA CTTTTATTGT AGCCTAAAGG
TTGCTATGCT AAGTTGCTAA AGCAGTGTAG TGGCATGAAA ATTTGTCATC ATACATCTAG ATGGAATCCT AATAGCTAAA
ATAGTTAAAG CATTAAAAGA ACTTTCTAGT CATGAAGCTG TTCCACACCT TTAAGATTTT AAATGGGTGA TGGGGCTAAG
CTTCCTTAAT TTCTTGTGCT GATTATTAAG TGTATATTTC AAAATTTCTA GTTGTATAAT GATTCCATGT ACTGATTAGC
TTAATGAAAG TCGTTTCTTG ATTTGATGAA AGAAA

>Vigan.01G284700.01
TTTTGACATT AACCTGTTCC TCCTTCTTCT TCTTCTCCTT CTTCTTTCTC CACAACAAGC CACACACGCC TCTGTATTAT
TTTTTTCTCA GCTTCACTTT CTTTTCCTCC ATTTATGAGG TTTCACTAGT TTTTCTTTCT AGGATCAGTA CTTCACTTCT
TTCATTGTCC CATATATGCC TCTGTTCCCC ACACTGCATG CTACTTTTTC TAAGTTTTTG AATTTTCTTA CCATAGTATT
GCAATGAAAT TCTAATCACA GGCACTGCTT AAAGTTTCAA GCTTTGCAAC TTTTGGAAGA TACCCATCTA ACCATTTCAG
TTGCCTAAGG AAGGGGTTTT GGTTTCAACC ATTCCTGCTT TTACCTCCAA AAGGGTCATA GATGATAGCC AGCTCTTTCT
GCAATGCTGA TTCTATGTTT TCAAGAGAAG AGGGGATAGA TGTTAGAAAG ATGATGGAGC ATAAAAGGAG TCCCTGCTCT
GTTGACCAAA GCAGTTATAC TTCTATTGCA TCTAAAAGGC AAAAGGCTGA TTTATCTATC AGCACTAAGG AGAGGAAGGA
GAAGATTGGG GAACGAATTG TTGCTCTTCA GCAGCTTGTT TCACCATATG GAAAGACAGA TACATCTTCT GTTCTAAAGG
AGGCAATGGA ATACATAGGA TTCCTTCATA AACAAGTTAA GCTGCTCAGT GCTCCATATC TTGAAACTTC AGCAGCAGCC
AAGATGCAGG GTATGGAAGC ATGCAGCCTG AGGAGTAGAG GGTTATGCCT TGTTCCTGTG TCATTTACAA TTGGAGTTGC
TGAGAGCAAT GGTGCAGATA TCTGGGCTCC CATTAAAACT ACAACTTCAC CTAAATTGGA GAATGATGTG TCTCAATTTC
ATTGACAAAG TTTCTCACTT TTATTGTAGC CTAAAGGTTG CTATGCTAAG TTGCTAAAGC AGTGTAGTGG CATGAAAATT
TGTCATCATA CATCTAGATG GAATCCTAAT AGCTAAAATA GTTAAAGCAT TAAAAGAACT TTCTAGTCAT GAAGCTGTTC
CACACCTTTA AGATTTTAAA TGGGTGATGG GGCTAAGCTT CCTTAATTTC TTGTGCTGAT TATTAAGTGT ATATTTCAAA
ATTTCTAGTT GTATAATGAT TCCATGTACT GATTAGCTTA ATGAAAGTCG TTTCTTGATT TGATGAAAGA AA

>Vigan.01G284700.01
ATGATAGCCA GCTCTTTCTG CAATGCTGAT TCTATGTTTT CAAGAGAAGA GGGGATAGAT GTTAGAAAGA TGATGGAGCA
TAAAAGGAGT CCCTGCTCTG TTGACCAAAG CAGTTATACT TCTATTGCAT CTAAAAGGCA AAAGGCTGAT TTATCTATCA
GCACTAAGGA GAGGAAGGAG AAGATTGGGG AACGAATTGT TGCTCTTCAG CAGCTTGTTT CACCATATGG AAAGACAGAT
ACATCTTCTG TTCTAAAGGA GGCAATGGAA TACATAGGAT TCCTTCATAA ACAAGTTAAG CTGCTCAGTG CTCCATATCT
TGAAACTTCA GCAGCAGCCA AGATGCAGGG TATGGAAGCA TGCAGCCTGA GGAGTAGAGG GTTATGCCTT GTTCCTGTGT
CATTTACAAT TGGAGTTGCT GAGAGCAATG GTGCAGATAT CTGGGCTCCC ATTAAAACTA CAACTTCACC TAAATTGGAG
AATGATGTGT CTCAATTTCA TTGA

>Vigan.01G284700.01
MIASSFCNAD SMFSREEGID VRKMMEHKRS PCSVDQSSYT SIASKRQKAD LSISTKERKE KIGERIVALQ QLVSPYGKTD
TSSVLKEAME YIGFLHKQVK LLSAPYLETS AAAKMQGMEA CSLRSRGLCL VPVSFTIGVA ESNGADIWAP IKTTTSPKLE
NDVSQFH*