GBrowse Details

Vigan.01G283600.01

Basic Information:
Name: Vigan.01G283600.01
Multiple alignment
Variant Information
Position: Chr01:40383643..40390438 (- strand)
Length: 6796
Functional Information:
Description: Similar to Nucleic acid binding protein, putative. [B9SFT0, Ricinus communis]
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:25.69,24.72,13.83,15.46,15.93,7.76,12.43,11.51
Arabidopsis thaliana homolog: AT3G59800.1
Automatic updates:
Name: NM_001249478 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100500071 (LOC100500071), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001255431 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100817273 (LOC100817273), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:40383643..40383909 (- strand)
Length: 267
Type: three_prime_UTR
Position: Chr01:40383910..40384125 (- strand)
Length: 216
Type: CDS
Position: Chr01:40385381..40385427 (- strand)
Length: 47
Type: CDS
Position: Chr01:40385510..40385651 (- strand)
Length: 142
Type: CDS
Position: Chr01:40388880..40388981 (- strand)
Length: 102
Type: CDS
Position: Chr01:40390038..40390124 (- strand)
Length: 87
Type: CDS
Position: Chr01:40390125..40390438 (- strand)
Length: 314
Type: five_prime_UTR

>Vigan.01G283600.01 class=Sequence position=Chr01:40383643..40390438 (- strand)
GTAGAAGGAA GAAAAAACCA TTTCCCATGT CTAAAAATCT ACGTGTATAT CCAGCCCCTA TAAAACGATA CCCATCGGGT
CTTACATCAA GTTAAGGCCC ATCATGTAAT TGCTGCATCT GAATGAGAAG GAGAACGATA AAAGAGGAAA CAACCAAACA
TCTAAAGAAA CGAAAGAAGG TATCGAAGGA GGTTTGAGAT TTGGAAATTG AATCCCTAAT TTGGAGAAAC CTGGTCCAAC
TCCTGTGGAG GAGTGGTGTT TCAATCTGCA TGATCTCATA GTGAATTGTG TTGTGTTCAA TCCGCAGAGT AACAATGGGG
AAAAACCAAG CCTACAAAGC TATGCAGAGA GCCAGGTTGG GCGGTGCCTC CGCCGGCCCC GACGAGATTG AAGACGGCAT
GGTTTGTACC CTTCCATACT AACCCTAACC CTAACCCTAA CCCTAACATA ATCCCTATCT TCTTCTGCCT TTACCCTTTC
CTTATCACGG ATCTCTCCTG ACGAAACCCC TACAGCATTT CTAATAGTAG TTCACCACAT GATTATGAAT GTCTTTGTGC
TGGATTTTAC ACTGTTGGAC TCTGTTTGCC CCGCAATTTA CCGTATTCGT CAATTAGCAT ATTGCAATCT CAAATACGAT
TTCATCCCGA ATACTAATTT CAGAACATTT CCGACTCTTT CAATCGGGAA CTCTATGGTT TCAAAGCATC GGTCCTCAAC
GCGAAGTTTA GAACTTGCTG TTTTAGACTA GTATTTACTC ATTTGGACTC GTTTTCTGGG ATCATTTCCA GCTTCCTTAC
AAAATATTGT TGAAATAAAT TGGGCTGGAA AAGTTGTCCG ATGCTTTAAC TTTACTGGGA AAATATAACT TGTGCATTGA
TACTTTAAAA CCCTGCTTGA ATCACAAATT TTAACCTTTT TTCTTCTTTT TTAGTTTAAT ATATTCTCTA CAAATTTTAG
TTGTTAGTGG AAGTAAACAT TCTCAATACT TAGTTCAAGG TTTTAAGCTG CGTTCACACT AGGGGGGTCA TTGCATTTCA
TAATATTGCA GAAAGTTGTG AGGAAATACA GCTCATGTGG TTACAGTTGT GGTCGCATTG TACTTAATAT ACTTAAAAGC
CTTGGCCTTG AGGTAGAAAT CATGATCACA GTCCGTTTTC GAAACATTAA TACTAAGTGA ACAATGAATT GGAACTTCAT
GCACAAGGAT CTTTTATCCA AGAATCTTGC ATAACTATTC TGGATTTCCT TTTTTTTTTT CTGTTGTTGA TGTGATCTGG
TGGAAAATTT CATAACTGAG GCATATACAT TATTTGATGG GAACACTTCC TATGATGGTC TTCGTTCTTC TTGTGTATTA
TTATGGTACA GGATAAAATG CTTTATAATG CTTGAATGTT GGATCACTTC TATATTTCTC TTTTACCCTG GAGCGATATT
GATGAGGACA GTCGCAGGTG GATGGTTCAT TTCATTCACC AGAATGGCAT GCAGCACGTT TGGCTAGCCT TAACACCTCT
CACACCATTA CCTGGGAAGA GTACAAAAAG AAGCAAAAGG TAATCTTCTG AAAACCTTGA ATGTTCTCTC TCCTCTGCAT
TTTTTAATCA GAATGAATTG ATTTAAAAAA CATCAATTGA ATTTTCTTGC TGCTCAATCT TATCCAAGCT ACATACTCTA
GCTTTTTTAT TATTTCAATC CATGTCATTT CTGGTTTAAA TTTTGCTTCA ATATATCCTT GTTTATAGCA ATTATGGATT
ACTATCTCTG TATTCAATTT GAGGGTTGTT TATCTCATCA TTCAAGTGCT CTCCTACTGA CTTCATATAT TAGACAATTG
TGAATCGTGT CTGAAGTTTG GCCCATTTTC CTAAACGAAC TTGTTTATTT TCCCTTTCCT TCTCATGTTT TGATTATAAA
TTTTCTTTCG TGTTTTTTTT CTAATATAAT TACATTTTGT TGGAAAGCCC ATGTTTGTCA TTTGGCATTG TACGAGTATT
AGTTTTTATT CCTCATTGTA TCGCAATGGT TATACTGTGC TCAAGTTCTT TTATAAAAAT TAATCAATGC CTCATTGGGG
AACGCTGAAT ATGATTCTTT CACCCTAGCC ACACAGATAA ACATCAACAC TTAACCAGTT GGCCAATCTT AATTCACATA
CATTTCATTG CCCTAAGATT TGTAAACTGA CAGCAAACCC CAAACATATC CAATACCCGC TCCCCAAATC GTTTAACATT
TGATTGGCGA CAGACTTAAA AGTGTTAAGT ATTTACAGAA CTCAAAAACT TTCGACTCAT TCTTAATTAT TTGTTTTGAT
CCTTAACCCT TTTTTTATTG CTTTAGTCCT AGGAAAAATT GTTTATGAAA ATCTTCTATG CCACTAATTT GACCTTCAAA
GTTAACCTTG ATTGCATTAT CTCCCATGCT ATGTTAGAAG GACTAAAATC ATAAATAACG TTTATAAAGC ATGTTTGAAG
TAGAATAAAA AATAGGTCCA GTTGAATTTT GTGAGTTTTT TTATAATAAT AGAAATTATG ACAATTGAAC AAGATTAGAA
AAAGGTAAAT CATGTTAATG TTTGCAATGA TAATTTACCA ATTTTCAAAT GAGTGATTGA CACCAATAAT GATAATTAGA
GGTTTCAAAA TGGGAAACCC GAAAATCCAG TACATATAGG CTTGGCCAAG CCAAGACAAA GAGGTGTAGC CTGGCGATAG
CCATGTTATT GTGTGAGAGA TTATTCTCTA CCCAGGATTG AGAGAAACCC AAGACAAAAT AAAACTTGAA AAACTACGTT
GCATGTGTAG GCTTTCCTTA GAATTAGGTG TATTTGTTTG TTCTGGTCTC AATCACTCAT TCTGAAAATT GGTTAAATTA
TTCATTTTTA ACATCAACAT AATTTACATT TTTTTTAATC TTATCAAAGA TGGTTCATAA CAATCAACTG CACCTAGTTT
CTTCTACATT AAGTATGTTA TTTTTACCTT AGTCCTTCTA AATAATTTTT TACGTTTTAG TCCCTGGAAA TATTTATTTT
TGTTTAGTCC TTGCAAATAT TTCTTCTTTT ATTTTGGTCC CTATAAATAT GTTGCTTTTT TATTTGAGTT CCTGATGACA
TCGTATGTTG ATGCAACACT TTTGGCAATG TCAGGATCGT TAATCTGCCA ATTTTGTTGA TGTTGTAACT TGTATGTGGT
GATGTCATCA ACATTTTAAC TTTGACAGTA AGATTAATGG CGGGAATGAT TTCCAAAAAA CTTGCGAGGA CTAGAGTAAA
AAGAAAAATT TAATGACCAA AAGACCGCTC TTTGCAAGGA TGAAAAATGT AATTAAGCCT TCTCTATATA TGTAATACAA
TGACAAAAGG ATTTTTAGAT TATCTTATGA AGTTTTCTTT CAGGAACTGA ATTAATTTTT AACATAAAAT TATAATTTGT
GTAACCTGAA AACATTAGAA AGAAATTAAA GTTCATTGTT GTATTTTTTT TAGGCTTATA GAAAAAAAAT ATACTATATT
CATTGTTTAT TTTTTTATTT TGTTTGCTAT TTTGGATTCA TTAATATAAC TAACTAAATT GTGAGAATGT TATATTTTCT
CTTGTTTATG AGACGTGCAT TTTTCTCTAT ATATGGGCAA ATGACAGACC ACTCGCTTTT GGTTTTTTAG AGTATGTTGC
CTGTTTTGTG TCTATTTGGA CTAGATTCTT CATAAAGACT TCGAGATAAA GAAAAATAAG AAAAATTAAA TTGACTTCTC
TATAAGTTAA AATTAGCTTA TGTGCATAAG TTAATTTCTA GAAGCACTCA TGTATAACTT CTCCATAATT TTATTTTTAA
CTTGTTCATT AGCTAATTTT AGCTTATGGA GAAGTTAATT TCATTTTTTT CCTCTCCTGG AAGTCCTTCT GAAGAAACTT
GTCCAAACAT GCCCTTTACT GTTTATTAGT ACATTATACA AATCTTGTTA TTATGAACCA CTTGACAAAT TCTACTAACC
TCCCAAAAAT GTCACATGAC ACTGCGATTT TGGTTTCACA TGACTATGGA TATCCCCTAT AAATTAGTTG GATCTGAGTT
TGTCTGTGAC AGAAAATGTT GAAATTAGTT GTAGGCAATT GAAGTAGTTT TGCTTAGAAG TTTTCTATGG AAATTAGATT
CCAGTCTGTG TATTATCTAT CCTTTTTTTT TCTCAAGGCT CTACTGCCAT CATAAATGTA CAAGTTGTGT CTGCGTTTTA
TGAGGAAGGC AGGTCGTTGT CATTTGATGA TAAACAGTAC AGAGAGGGTT ATGGTAATGT TTAAAAAAGA GGGAGTTTTT
TGTCATTTGG CCGCACCATA ACTAAGAGCC AGCCTTGTAA GCTAGCTTTA CTATAGCCAC TTTGAAAGCA AGCCATTAGT
CTGGCAGCTA AGAAACTTTA TCTTTCTCAT TAACTAATTT TTCTCATTAA CTAATTAAGG GGCCATCAGG TATTATCTTA
CACGCTTTTC TTAATATATG ATTGTTTAAG TCACTCCGTG GTCCCCTGAA AGCCATGTAT GATCGTGCTC ATTCCAAGGA
AATATTTGCC AAAGACCTGC CTCGTTAGGT TATTTTATAG CTTTTTTGTA GTGTGTGGCT AATATATTCT GGATTTGCAT
TCTTTCCCCT ACTTTACTAG TTATTTCCTA AATATCAATG CTTATCTTAA TACTCCATGT ATCAATATTC TAGGTCAATA
AAAGTGTTTT AAGTTGTGTT TGTTCACGAT ATTATTTATT GAACTTTATT TGTATTTTAT ATACTAGGAA GAGGAAATAA
AAAAAGGGGA ATTGGAAGCA GATGCAGATA GGATGATGAG AGAGTACAGA GCTCAACTAG ATGCTGAAAG GGCTCGTAAG
CTTTCCCAAG GAAGAAATCA CTCTAGTAGC AAGTCTAGAC ATTCTAAAGG TATGTGTGGT AAAGTTATCT TGTGTTGTGC
TAGTACTTAG CTTTTAATTT GCTAATTTTG ACTGCATATT CTAATTGGCA GATAAGAGGG ACAAAATTTC CAAGAAGCAC
AGCAGCAAAA AGAGAAAGGT GCTTTTTAAT TCCGAAGACA TTTATGTTTA ACATGGATGA AATGAAAACT TGTTGAATTT
CGTGTTTTTG TTTGCAAATT GGAAATAGCA TAACTCTCTC TTTAACTTAA CTAAGAGCTA GTGATTGTCT TGTCTTTGCT
TTTAGTTTTC ATTGACCATG CTTTTGGACT AAATATATTG AAGGTACAAG TTGTTTGCAT TAATGTTAGA AAATTTTGGA
GGCTTCTGAG TCTTCTCTTT AAATTTTTTT AAAAGGATAA ATACGAAAAT ATTCAGATAT TTCAGTCATT TTCAACTTTC
ATGGGTAAAA TATTATTTTT TATGGAACGC ATGCTTCAAG TGGATTTACA AAATAAACTA AAATGAACAT TGAGAATGGC
TGAAACATCA AGGGGGTTGG TTGTTATATA CCCTATAACA TATTTTATCT TCTTGAGATC TGGACTGAAG GTTATGATGA
AAATTGTGAT TATTCTTTTG TAAAAGAAAT TGATGTTTCA TTGTTGCATC AACATATTTT ATCTTCTTGA GATCTGGACT
GAAGGTTATG ATGAAAATTG TGATTATTTT TTTTAAAAGA AATTGATGTT TCATTGTTGC ATCAACATAT TTTATCTTCT
TGAGATCTGG ACTGAAGGTT ATGATGAAAA TTGTGATTAT TTTTTTTAAA AGAAATTGAT GTTTCATTGT TGCATCGTGT
GTATGTGCCG CTTGTTTGTC AATTTTCTTG TACGATAATA AAAATATTTG TAATTAAAAA CTTAATTAAT GTAACTTGTC
TGAAAATGTA AAGCGGTTGC TAAATTTTAT GTTAAAGTTA GAGAAAATGT GTACATAAGA AGCACTTATA GAAATTAATA
TTTTTTTGAT AATTTTTATA ATGTTGTAAT TGCACAGTAG GAACATTTAC AATTTTTCAT CACAGTAATT ACTACTCATG
AGTAGTTTCT TACATATCAT TGAATCAATA AAGTTAGTGG TAAAAGAATG TTCACACATA TTACAAAAGA GTAGGCACAT
TATTTAATGT TATAGATGTC TATGCTTGAC ATTAACATTA ACTTGTGTAA ATGTGCGGCT GACTGAAATC GTTGGTTTCA
ATTAATATGT AGCTTCTCTT GGATTGTTAT TTGCGTAAAA CACCCGTATC TTAAATTAGT ACTTTGTTCA AACAATGTCG
ATTGACACTT GATGTATCCG TTTGTTATGA ATGTAAGCTT TTTTATGTAT CCTCTTTACC TCTACTATTG TAGCATTCAA
GAAGATCTTC TGCATCTAGC TCCTCTTCAT CATCTTCATA CTCTTCCAGC AGTGATGAAG AAGAAAGAGG ATCAAGGAGG
TCCAAGTCCA GGTCTAAGAG GTCAAAGAAG GAAAAGAAGC CCAAGTCAAG AAGCAAGGAT ACTGGAACGG ATAGTGAAGA
TAATGGTCCA GTTCGTCTTT CAAGATTCTT TGGGAATGTT AAGAGTTAAT AGTGTCTAAA TACTTGGTCA TGTATCATAA
AATTATTTTA TGCAAATTGT ACACTGTGGG CAGCTTCACT CTTATGTTCA ACTTATTCTT TCTTAACAGA TTTGTAATCT
TGTATGCCAT TTTGTCTTCT ATCAATGTGT GAGATGGAGG GGATCTTTGA GTTTCGATGA CTATAAATTG AATTATAGCG
TGATGTTTAA CGGACCTCAC TGGTTTAACC ATATAAAACT ATTAGTGGAC TCAATGGAAA GGGAGGGAAT ACAGCA

>Vigan.01G283600.01
GTAGAAGGAA GAAAAAACCA TTTCCCATGT CTAAAAATCT ACGTGTATAT CCAGCCCCTA TAAAACGATA CCCATCGGGT
CTTACATCAA GTTAAGGCCC ATCATGTAAT TGCTGCATCT GAATGAGAAG GAGAACGATA AAAGAGGAAA CAACCAAACA
TCTAAAGAAA CGAAAGAAGG TATCGAAGGA GGTTTGAGAT TTGGAAATTG AATCCCTAAT TTGGAGAAAC CTGGTCCAAC
TCCTGTGGAG GAGTGGTGTT TCAATCTGCA TGATCTCATA GTGAATTGTG TTGTGTTCAA TCCGCAGAGT AACAATGGGG
AAAAACCAAG CCTACAAAGC TATGCAGAGA GCCAGGTTGG GCGGTGCCTC CGCCGGCCCC GACGAGATTG AAGACGGCAT
GGTGGATGGT TCATTTCATT CACCAGAATG GCATGCAGCA CGTTTGGCTA GCCTTAACAC CTCTCACACC ATTACCTGGG
AAGAGTACAA AAAGAAGCAA AAGGAAGAGG AAATAAAAAA AGGGGAATTG GAAGCAGATG CAGATAGGAT GATGAGAGAG
TACAGAGCTC AACTAGATGC TGAAAGGGCT CGTAAGCTTT CCCAAGGAAG AAATCACTCT AGTAGCAAGT CTAGACATTC
TAAAGATAAG AGGGACAAAA TTTCCAAGAA GCACAGCAGC AAAAAGAGAA AGCATTCAAG AAGATCTTCT GCATCTAGCT
CCTCTTCATC ATCTTCATAC TCTTCCAGCA GTGATGAAGA AGAAAGAGGA TCAAGGAGGT CCAAGTCCAG GTCTAAGAGG
TCAAAGAAGG AAAAGAAGCC CAAGTCAAGA AGCAAGGATA CTGGAACGGA TAGTGAAGAT AATGGTCCAG TTCGTCTTTC
AAGATTCTTT GGGAATGTTA AGAGTTAATA GTGTCTAAAT ACTTGGTCAT GTATCATAAA ATTATTTTAT GCAAATTGTA
CACTGTGGGC AGCTTCACTC TTATGTTCAA CTTATTCTTT CTTAACAGAT TTGTAATCTT GTATGCCATT TTGTCTTCTA
TCAATGTGTG AGATGGAGGG GATCTTTGAG TTTCGATGAC TATAAATTGA ATTATAGCGT GATGTTTAAC GGACCTCACT
GGTTTAACCA TATAAAACTA TTAGTGGACT CAATGGAAAG GGAGGGAATA CAGCA

>Vigan.01G283600.01
ATGGGGAAAA ACCAAGCCTA CAAAGCTATG CAGAGAGCCA GGTTGGGCGG TGCCTCCGCC GGCCCCGACG AGATTGAAGA
CGGCATGGTG GATGGTTCAT TTCATTCACC AGAATGGCAT GCAGCACGTT TGGCTAGCCT TAACACCTCT CACACCATTA
CCTGGGAAGA GTACAAAAAG AAGCAAAAGG AAGAGGAAAT AAAAAAAGGG GAATTGGAAG CAGATGCAGA TAGGATGATG
AGAGAGTACA GAGCTCAACT AGATGCTGAA AGGGCTCGTA AGCTTTCCCA AGGAAGAAAT CACTCTAGTA GCAAGTCTAG
ACATTCTAAA GATAAGAGGG ACAAAATTTC CAAGAAGCAC AGCAGCAAAA AGAGAAAGCA TTCAAGAAGA TCTTCTGCAT
CTAGCTCCTC TTCATCATCT TCATACTCTT CCAGCAGTGA TGAAGAAGAA AGAGGATCAA GGAGGTCCAA GTCCAGGTCT
AAGAGGTCAA AGAAGGAAAA GAAGCCCAAG TCAAGAAGCA AGGATACTGG AACGGATAGT GAAGATAATG GTCCAGTTCG
TCTTTCAAGA TTCTTTGGGA ATGTTAAGAG TTAA

>Vigan.01G283600.01
MGKNQAYKAM QRARLGGASA GPDEIEDGMV DGSFHSPEWH AARLASLNTS HTITWEEYKK KQKEEEIKKG ELEADADRMM
REYRAQLDAE RARKLSQGRN HSSSKSRHSK DKRDKISKKH SSKKRKHSRR SSASSSSSSS SYSSSSDEEE RGSRRSKSRS
KRSKKEKKPK SRSKDTGTDS EDNGPVRLSR FFGNVKS*