GBrowse Details

Vigan.01G279200.01

Basic Information:
Name: Vigan.01G279200.01
Multiple alignment
Variant Information
Position: Chr01:39834919..39837678 (+ strand)
Length: 2760
Functional Information:
Description: Similar to Uncharacterized protein. [A5A6Y4, Glycine max]
InterPro: DnaJ domain (IPR001623)
DnaJ domain, conserved site (IPR018253)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:91.49,13.26,51.17,141.84,56.39,37.98,35.57,25.28
Arabidopsis thaliana homolog: AT4G13830.2
Automatic updates:
Name: NM_001248247 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max DnaJ-like protein (J1), mRNA.
PubMed ID: 19395413 NCBI(pubmed)
17497082 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr01:39834919..39835057 (+ strand)
Length: 139
Type: five_prime_UTR
Position: Chr01:39835058..39835471 (+ strand)
Length: 414
Type: CDS
Position: Chr01:39837299..39837448 (+ strand)
Length: 150
Type: CDS
Position: Chr01:39837449..39837678 (+ strand)
Length: 230
Type: three_prime_UTR

>Vigan.01G279200.01 class=Sequence position=Chr01:39834919..39837678 (+ strand)
CAAAATCCAA AACCAAAAAT AAAAGTAAAT AAATAATCAG AACCATATAA AATCGACAAG TCATAACGAG CAACAACACC
AAAACACAAG TAAGAGCGAG AGAAAAGCAG ATAGAAAGAT AATAAAAATA ATAATAATAA TGCGGTGTAA TGGTTTAACC
GTACACGGAA GCAACCACCG TGGCTTCTGC GTCCCCACCG TGTCTCCGGT GTTCTTGAGA CCCACCCGAC CCGTCACCCG
TATCGCGTTT CCCAAGGCTA GCCTGAAGAA CGAGGGACTA GTGATGGAGT TAAGCTTCTA CGAGCTTCTG GGTATACCCG
AATCCGGTTC CTTGATGGAG ATCAAGAACG CGTACAAGCA ACTCGCCCGA AAGTACCACC CGGATGTGTC TCCTCCGGGT
CGGGTGGAGG AATACACCAA ACGGTTTATT CAGGTGCAGG AAGCCTACGA AACTCTCTCC GATCCTTCCC GAAGAGCCAT
GTACGATCAC GACATGGCTA AAGGTATTAA CTTCGCTTTC AACGCCCGCA GACGCCGCAA TTACCACGAT CAGGTACATC
TCGTTACATC TAGGGTTGCA TAAATACTTC TCCCCGATTT CAATTCTGTG ACTGCCCAGT TTCTGATTCA CATGATTCAA
TGATCTCTTC TGTTTTTGGA ATCGCTTTCC CCCCCTGATC CTCATCAAAG ATGTTGCAAA TAATTAAGAT ACCTTTAATT
AGTGCGCTAC TTGTTTGATT GTTTCATTAC TTTGTTATTT TTTTTTAATT AACAATTTTT TTCATGTCCC AAAAATCTTT
TCCTCGGCCG GTAGGTATGT AAACCCTTAC CACAAGGATC TTGGACTGTG GCTAAATGAT TTTACCTTCA ACACACTAAC
CACTTGTGTC AAAGTCAAGG ACTTTATGTT TGGTTGTTCT TATGCTCTCT CTAAATCTTA AATGAAGAGG CTTTGCACTT
ACAGTCCGTG TTAACTTGTT TGGTCATGTC GTTGTTTGGA TTATCTTCTT TTCTGACTTG TGATATATTA CATATGGCTT
ATAATGTTTC TAGAATCTTG TGGATAATTC TTTTGTTAGT TTCTAGTGTA TAATTATAGC ATTGAGCACT ATCCGTCATT
TATATCTAAT TTATTTGGGC TATTTTCACC GTGTGTCTGA AGTTATGATT TGATACATGT TAAGATTTCC AGATGGTTTT
TTTTCTACCA ATTTGTTTAC CCTATCTCAG TCTTGAACAA AGAATTTGAC TATACAATTT TAACCTGGAA TGAGAATTAT
TTCATAAATC ATCATGTACT TTTGAATTCT GATATTTGAT ATTTCTGGAT GCTTGTCATA ACTTGATATA GGCAAATTCT
TTCTCTGTTC TGTGCCATTT TACAGTTCTA GGCGTCACCT TCTTCTTTAA AAGGTCTTTT TCATGGTGCT GTTACAGATT
ATTCTGGCTA AGAACTCATA TCAGTCTTTA ATATGTTTAT TACAAATATG AATTGTGCTC TGCCGCTATC CATAATTTAG
ATTCTTCACT TTACGAGGAC TATGACACAC GGGTTCCTAT GAAAGTTTCC TGGCATAAAT AGATTATTAT TATTATTATT
TTCATTCTGG ATTATTCCTT TTTCCATTTT GAGGATGTCG ATCTCAATCC CAGCTCATCA CTGCAGAATC TGCACTTGTG
TGTTGTAGTA TATTAAATAT ATAGTTGCCT CTTCAGCACA TGAAATCTGC ACTTGATTTG TCTTTGCTGC GAGCTGGTAT
TGTTGTTTGC AATGTCTATT AACTTTAGCA CTGTACCTAC TCCCAATAAG ACTATTTTCA CAATTATGTA CGAGGGATTT
TGGCAGAGAC TTTCTTATAA CATTTCCCCG GTATTAAATA TGAATTGGTT GTTTCTTCCT ATTCTGCCTT TAGTTCCTTT
TTTCCATTTC TTTATTGTTT TTTAACATGT CAACTTCATT CCTTGCTCAC CACAACAAAA TCTGAGTAGT CATGCTTTCC
CTGTCGAACA TGTAATAATT GGCTTTTCAG CACATTAAAA GTCTGTAGAG GTTAACAGTG TCCAAGATAT AATTAAAAAT
ATCAACAATA ATGAGATGGA CTGTGATCTT AATTATTTCT TTATTCATGT TTGCCATTTT CTCATGGTGA TAAATGAGTA
GTAGGACATA CAACGGGAAT TCGTGAATCA TGCATTCTAA AGAGATGGAG ACCTTTTAAT TAATTGTATT TGGGTGGTGG
GGTGTCCAAT TCCCAGTGAC TTGTTCTCAC GTAACTTCTT TTGTTTTTGT ATATTTAAAT TTGAGAAAAA GGGGGCATGG
TAGTTTGGTT AGAACACTAA TTTGATTTAC TCACTGATTA AAGCTGTTGA TTTTGAAAAG GTGGTGGAAC AAAAAACTGA
ATGGAAATCT CGGTGGCAAT CTCAACTGTC GGAGCTGAAG AGAAGAAGTA ACAGCAAGGA GGGTGGAGGG AATATGTCAT
GGGCAGCGAG AATGCGCCAG CAGAGGGATG AATTGGCTAA TGAATCATGA CTAGGACGTA ACTAATTGTA TATATACATA
TATATGATAG ATGTGTACAT CTCCGAACTC TAGATCAAAT CAGATATATA ATATGAATCA TGAGAAAATG TGCCATTGCT
GAAACAAAAG TTTGCGACTC TAGGCCATTT TAATGAACAT TTGCAAAAAT AATTTTGAAG TAAAGTTTTT TGCATTTATT
TTATTTATTT ATTCTGAAAG TAAATTAGTA GACAAATTCA 

>Vigan.01G279200.01
CAAAATCCAA AACCAAAAAT AAAAGTAAAT AAATAATCAG AACCATATAA AATCGACAAG TCATAACGAG CAACAACACC
AAAACACAAG TAAGAGCGAG AGAAAAGCAG ATAGAAAGAT AATAAAAATA ATAATAATAA TGCGGTGTAA TGGTTTAACC
GTACACGGAA GCAACCACCG TGGCTTCTGC GTCCCCACCG TGTCTCCGGT GTTCTTGAGA CCCACCCGAC CCGTCACCCG
TATCGCGTTT CCCAAGGCTA GCCTGAAGAA CGAGGGACTA GTGATGGAGT TAAGCTTCTA CGAGCTTCTG GGTATACCCG
AATCCGGTTC CTTGATGGAG ATCAAGAACG CGTACAAGCA ACTCGCCCGA AAGTACCACC CGGATGTGTC TCCTCCGGGT
CGGGTGGAGG AATACACCAA ACGGTTTATT CAGGTGCAGG AAGCCTACGA AACTCTCTCC GATCCTTCCC GAAGAGCCAT
GTACGATCAC GACATGGCTA AAGGTATTAA CTTCGCTTTC AACGCCCGCA GACGCCGCAA TTACCACGAT CAGGTGGTGG
AACAAAAAAC TGAATGGAAA TCTCGGTGGC AATCTCAACT GTCGGAGCTG AAGAGAAGAA GTAACAGCAA GGAGGGTGGA
GGGAATATGT CATGGGCAGC GAGAATGCGC CAGCAGAGGG ATGAATTGGC TAATGAATCA TGACTAGGAC GTAACTAATT
GTATATATAC ATATATATGA TAGATGTGTA CATCTCCGAA CTCTAGATCA AATCAGATAT ATAATATGAA TCATGAGAAA
ATGTGCCATT GCTGAAACAA AAGTTTGCGA CTCTAGGCCA TTTTAATGAA CATTTGCAAA AATAATTTTG AAGTAAAGTT
TTTTGCATTT ATTTTATTTA TTTATTCTGA AAGTAAATTA GTAGACAAAT TCA

>Vigan.01G279200.01
ATGCGGTGTA ATGGTTTAAC CGTACACGGA AGCAACCACC GTGGCTTCTG CGTCCCCACC GTGTCTCCGG TGTTCTTGAG
ACCCACCCGA CCCGTCACCC GTATCGCGTT TCCCAAGGCT AGCCTGAAGA ACGAGGGACT AGTGATGGAG TTAAGCTTCT
ACGAGCTTCT GGGTATACCC GAATCCGGTT CCTTGATGGA GATCAAGAAC GCGTACAAGC AACTCGCCCG AAAGTACCAC
CCGGATGTGT CTCCTCCGGG TCGGGTGGAG GAATACACCA AACGGTTTAT TCAGGTGCAG GAAGCCTACG AAACTCTCTC
CGATCCTTCC CGAAGAGCCA TGTACGATCA CGACATGGCT AAAGGTATTA ACTTCGCTTT CAACGCCCGC AGACGCCGCA
ATTACCACGA TCAGGTGGTG GAACAAAAAA CTGAATGGAA ATCTCGGTGG CAATCTCAAC TGTCGGAGCT GAAGAGAAGA
AGTAACAGCA AGGAGGGTGG AGGGAATATG TCATGGGCAG CGAGAATGCG CCAGCAGAGG GATGAATTGG CTAATGAATC
ATGA

>Vigan.01G279200.01
MRCNGLTVHG SNHRGFCVPT VSPVFLRPTR PVTRIAFPKA SLKNEGLVME LSFYELLGIP ESGSLMEIKN AYKQLARKYH
PDVSPPGRVE EYTKRFIQVQ EAYETLSDPS RRAMYDHDMA KGINFAFNAR RRRNYHDQVV EQKTEWKSRW QSQLSELKRR
SNSKEGGGNM SWAARMRQQR DELANES*