GBrowse Details

Vigan.01G269800.01

Basic Information:
Name: Vigan.01G269800.01
Multiple alignment
Variant Information
Position: Chr01:38432476..38436959 (+ strand)
Length: 4484
Functional Information:
Description: Similar to auxin efflux carrier protein. [W6JPP8, Phaseolus angularis]
GO: Biological Process: transmembrane transport (GO:0055085)
Cellular Component: integral to membrane (GO:0016021)
InterPro: Auxin efflux carrier (IPR004776)
Auxin efflux carrier, plant type (IPR014024)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:5.64,4.76,23.61,82.69,8.75,6.88,7.69,54.76
Arabidopsis thaliana homolog: AT1G23080.1, AT1G70940.1, AT1G73590.1, AT2G01420.2, AT5G57090.1
Automatic updates:
Name: NM_001329833 NCBI(nuccore)
Organism: Vigna angularis
Description: Vigna angularis auxin efflux carrier component 4-like (LOC108343029), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:38432476..38432812 (+ strand)
Length: 337
Type: five_prime_UTR
Position: Chr01:38432813..38434097 (+ strand)
Length: 1285
Type: CDS
Position: Chr01:38434315..38434603 (+ strand)
Length: 289
Type: CDS
Position: Chr01:38434753..38434838 (+ strand)
Length: 86
Type: CDS
Position: Chr01:38435566..38435723 (+ strand)
Length: 158
Type: CDS
Position: Chr01:38436110..38436186 (+ strand)
Length: 77
Type: CDS
Position: Chr01:38436284..38436350 (+ strand)
Length: 67
Type: CDS
Position: Chr01:38436351..38436959 (+ strand)
Length: 609
Type: three_prime_UTR

>Vigan.01G269800.01 class=Sequence position=Chr01:38432476..38436959 (+ strand)
ACATAGTTAT ATACATATAT ATCCACCTCT TCTCCTTCTA TATATGAGTC TATTCCCGCA TAGCTCTCTC TCTATATATA
TGTAGAGGCT AAGCTAAACT AAACTAAACT AAATCCTTCT CTCTCTCTTT CTTTCACAGC AGTTGATCAA ATTCAGAGCA
CAGCAGGTGT AGCAGGCATA AACCTTCGCT TCCACTCAGA CATATATCCC CTATCACTCC AGTTAGTTAT CTAACGGTTT
TCTATTTTCT CACTTTCTTC CCACTTTACC CTTTTTTTTC TCGCTTATGC CATCCCATCA CTAGCACACC GCACCATTTT
ATTCAATCAA AGCTAGAATG ATAAGCTGGA CCGATTTGTA CACCGTCTTG ACGGCGGTCA TTCCCCTCTA TGTCGCCATG
ATCTTAGCAT ACGGTTCGGT ACGCTGGTGG AAGATCTTCT CGCCGGACCA ATGCTCCGGC ATAAACCGCT TCGTCGCGAT
CTTTGCGGTT CCCCTTCTTT CCTTCCACTT CATCTCCAGC AACAACCCTT ACGCCATGAA CTTCCGCTTC ATCGCTGCCG
ACACGCTCCA GAAAATCATC ATGCTCTTTG CTTTGGCAAT CTGGACCAAC TTCACCGCCA ACGGCAGCTT GGAGTGGATG
ATTACCATTT TCTCCCTCTC TACATTGCCC AACACGCTGG TCATGGGTAT CCCGCTCCTT ATCGCCATGT ACGGCGATTA
TTCCGGCCAG CTCATGGTCC AGGTGGTGGT GCTCCAGTGC ATCATCTGGT ACACCCTCCT CCTCTTCCTC TTCGAGTACC
GCGGCGCCAA GCTCTTAATC ATGGAACAGT TCCCCGAAAC CGCTGCTTCC ATAGTTTCCT TCAAGGTCGA CTCCGACGTC
GTTTCGCTCG ACGGGAGAGA TTTCCTCGAA ACCGATGCTG AAGTCGGCGA CGATGGGAAG CTCCACGTCA CCGTTAGGAA
GTCCAATGCT TCTAGAAGAT CCTTCATGAT GACACCTCGC CCGTCTAACC TCACCGGTGC CGAGATTTAC AGCCTCAGCT
CCTCCCGTAA CCCCACGCCA CGTGGCTCCA ACTTCAACCA CGCGGATTTC TACTCCATGA TGGGGTACGC TCCTAGGCAT
TCTAACTTCG GCGCTGCGGA TTTGTACTCC GTGCAGTCCA CGTCACGCGG AGTCACGCCG AGGCCCTCCA ATTTCGAAGA
GAACTCTGCA CCCGCACCGC AGGCTATCAG CTCCCCAAGG TTCGGCTTCT ACCCCGCCGT GCAGACCGTG CCCTCTGCCT
ACCCTGCTCC CAACCCGGAA TTCTCTTCTG GGTTAACGAA GAGTGTGAGC AAGAATTCGC AGACGCAGCC ACAGCCTCAG
TCTCAGCCGC AGGCTCCAGC TCAAGCTCCT CAAGTTGCTC AACCGCCCAA CAGTAGTAGC AAAGCCAGCC ACGACGCTAA
GGAGCTCCAC ATGTTCGTGT GGAGCTCCAG CGCCTCACCG GTTTCTGAAG CCGGTGGCCT CCATGTATTC AGTGGAGCCG
ATTTCGGAGC TTCCGACCAA TCGGGCCGCT CCGATCAAGG TGCCAAGGAG ATTAGGATGT TAGTAGCGGA CGAACACCCT
CAAAATGGAG AAGCTAACAA AGGTAGTACC ACTAGATTCT TTCTGTTTTT TTCTCTCTCC TCGACTTAAA TTCACTTAGG
TTTAAAACTA GTTTCCACTC AATTTTCTAA TGAAGTTGAA TTCTTCAATC AAAGTTTAAA TTTGTGGTTG AACAAGAGAA
CTTGGTACTT TTGCAACTTA ATTTAGGCTT TGTTTTGAGG AACTGATTTA ATTTGGGTGA TTGCGGGTTG GAAATGAAGC
TACAGCAGAA GGAGAATTTA GGGGTGAAGA TTTGAAGTTT CCAGGGAAAG AAGGTGAACA GGCGGAGGAA GAAGCAGAGA
AAGCGGGCGC CGCCGGGCCC AACAAGCTGG GTTCCAGTTC AACGGCGGAG CTACACCCGA AATCGGGCGT AGGCGTGGCG
GGGAAACACA TGCCTCCGGC GAGTGTGATG ACTCGTCTGA TACTGATTAT GGTGTGGCGG AAGCTTATCC GCAACCCCAA
CACTTACTCT AGCCTCATTG GTGTGATCTG GTCTCTGGTG GCGTTTAGGT AAGTAAATTT CAAAGTCAAT CTGGAACAAC
GAGGATGAAT TTTTGTCATG GTTTTGACTT TTAGGGTTTA GCTATTATTA TTACTGTAGG ATGGTTATTT TGTGTTGACG
TAGCTGTGAT ATATGATTAC TAATTAATTA ATTGCAGGTG GCATGTGCAC ATGCCCAAAA TAATAGAGAA ATCAATCTCC
ATACTGTCTG ATGCTGGTCT TGGAATGGCT ATGTTCAGCT TGGGTGAGTG GCCGTGATAA TTTGTCCAAA TTCTTGCTCT
TCCAATAATT TCATTCCCCT ATATTTGCAA TTCCTTTCCT CTTTGGCGAA AACATCGTAA TTCATGATGG CTCCCTTTTC
CGATGTTTAA ACGTACATTG ACGAGAGTAA CTGATGATGT TCATGTGATT GTATCTAAAT AACTTTGTTG GTTCATTTCT
TGGAGTTTCA ACAATGCTAC TAAAAATAAT TGTTTGTGGA AATATGAAAT GAGAATGTTG ATTGAATGCG ATGGTAAGGT
GAGTGTGATG AATGCGTGAA AAGTATGGAT TTGGGGTAGA GCAAGTAATA AGCATAAACA AAGTAATCGG CGTCCATTGA
AATGAAGTTT GTTACCACAT AACACAAGCA GATGATGTTG TTCACTAGAC GATAATATGG GGATTGCATA GTGATAGTGC
AATGTCCCCG ACATGTGGGG TCTGGTCTTG AACAACGTCT CTATGCGGTC CAGGGCGGTG GTGGGGACCT GTACCATTTT
TGGACCCAGA TTAGGCAAAG GTAGTTGATT TAGACGAATC AAGCGGTACT AAAAATATCT TTTCATTCAC AGAACTTAAA
AGCATTTTCC CATCATGCCC TGACTGTAAA TTTTGGCTCC CTTTTTCCTT CTCTTTTCCT TTTCACCTTT TTACCCTTTC
GGCCAAGAAA AATATTGACG ACTAACCTAT TTCGGTTTTT GCGCTTCTAG GTCTCTTCAT GGCTCTTCAA CCCAATATAA
TTGCGTGTGG GAACTCAGTT GCAACATTTG CCATGGCTGT TCGATTCCTC ACAGGTCCCG CCGTCATGGC TGCAGCTTCC
ATCGCTGTTG GCCTACGTGG CACTCTCTTA CGTGTAGCTA TTGTTCAGGT AATTAACCTT GACCTATAAT CCTATTTGAT
AGATATCACA CTGTTAATCT TACTTGCGTG TGCAAATTTC TTTGATATCT TTGAATGCAA CAGAGGAAGT GATAGATTTT
CAATAGTTAG GACCCTTTGG CACTGTACAT TCTAGGAGAG AAGAACCCAA TAAAAAATCA TTAAATAGAC TCTTTCCACT
TGACTAATTA TAACTTTTAC TAAATTTAGT TACTAGTAAA ATATATTTTA GTGAAAACAT GTTTTATAGC ATCTTATATA
TTATATGAAA TTTTAATGGA TTTTTCTAGT TCAATTTTGG CTATCATGTT AAGCATGATT TGAAGAAAAA GCCCTGGAAA
GCTAACTAGC TGAATATGCA CATATTGTTC GTAGGCTGCA CTTCCGCAAG GGATTGTTCC ATTTGTGTTT GCCAAGGAAT
ACAACGTTCA TCCAGCCATT CTCAGCACAG GGTAAGTAAC TGAAGTTTCT CATTTTATTT TGATTTTTGT TCTTTTTCTT
AAGAAAGAAG TTAACATTTT TTCGTGAAAT TTGCAAACTT AATTGCAGGG TTATATTTGG GATGCTGATA GCTCTACCAA
TTACTCTAGT CTACTACATA TTACTTGGTT TGTAAAATAT GTATGCAGTA GTAGTCAGCA CACCAGGACA GAATGAATGA
CCCTTTTGAA CCTTTTTATA CTTTGGGAGT TAGCATGCAT GCCTGGTGAC CACAGTGGAT TACGCTGTTA TTAACGAAGA
TGTGGATCTT CTGAGCTGGG AGAACAAAAG CCACAAACTA AACTAGTATT CTTAAAGCAG AGGAGATCCT CGAGAGTTTC
CAAATTTTTT GGAATTTCTG AAAAAATTGA CCAATTGGCC CAAATCCTCA TAATTCTAAT CCCCTATCAA AAGTCCAAAA
TAGACGCAGT TTTCAAAAGC AGAGAGAGAG GAACAAGTAC AGCTTATGGG AGACATAGCA GAGGAAAACA GGGGAAAGCT
CGCATGAGCA GAGTCAATGA AATCTAAAAA TGGTTCCCTC CGTATCTGCA TTGTAAATTT TATTAGAGTC ATGTTTGTGT
CATCAAGTAA CAAAGACAGC TGAGCAATTG GGTAGGGGAA ATGAAAATGG AATATAAGCT GAAGATTGGT TTCTTTAGTT
TTGTTTAGTC ATTTGTTTAC TTCGATTTTT ATTATTATAT AATGGGTTTG TTTAAGTTTT GTTTTTGTCT TTGATCAACC
GCGG

>Vigan.01G269800.01
ACATAGTTAT ATACATATAT ATCCACCTCT TCTCCTTCTA TATATGAGTC TATTCCCGCA TAGCTCTCTC TCTATATATA
TGTAGAGGCT AAGCTAAACT AAACTAAACT AAATCCTTCT CTCTCTCTTT CTTTCACAGC AGTTGATCAA ATTCAGAGCA
CAGCAGGTGT AGCAGGCATA AACCTTCGCT TCCACTCAGA CATATATCCC CTATCACTCC AGTTAGTTAT CTAACGGTTT
TCTATTTTCT CACTTTCTTC CCACTTTACC CTTTTTTTTC TCGCTTATGC CATCCCATCA CTAGCACACC GCACCATTTT
ATTCAATCAA AGCTAGAATG ATAAGCTGGA CCGATTTGTA CACCGTCTTG ACGGCGGTCA TTCCCCTCTA TGTCGCCATG
ATCTTAGCAT ACGGTTCGGT ACGCTGGTGG AAGATCTTCT CGCCGGACCA ATGCTCCGGC ATAAACCGCT TCGTCGCGAT
CTTTGCGGTT CCCCTTCTTT CCTTCCACTT CATCTCCAGC AACAACCCTT ACGCCATGAA CTTCCGCTTC ATCGCTGCCG
ACACGCTCCA GAAAATCATC ATGCTCTTTG CTTTGGCAAT CTGGACCAAC TTCACCGCCA ACGGCAGCTT GGAGTGGATG
ATTACCATTT TCTCCCTCTC TACATTGCCC AACACGCTGG TCATGGGTAT CCCGCTCCTT ATCGCCATGT ACGGCGATTA
TTCCGGCCAG CTCATGGTCC AGGTGGTGGT GCTCCAGTGC ATCATCTGGT ACACCCTCCT CCTCTTCCTC TTCGAGTACC
GCGGCGCCAA GCTCTTAATC ATGGAACAGT TCCCCGAAAC CGCTGCTTCC ATAGTTTCCT TCAAGGTCGA CTCCGACGTC
GTTTCGCTCG ACGGGAGAGA TTTCCTCGAA ACCGATGCTG AAGTCGGCGA CGATGGGAAG CTCCACGTCA CCGTTAGGAA
GTCCAATGCT TCTAGAAGAT CCTTCATGAT GACACCTCGC CCGTCTAACC TCACCGGTGC CGAGATTTAC AGCCTCAGCT
CCTCCCGTAA CCCCACGCCA CGTGGCTCCA ACTTCAACCA CGCGGATTTC TACTCCATGA TGGGGTACGC TCCTAGGCAT
TCTAACTTCG GCGCTGCGGA TTTGTACTCC GTGCAGTCCA CGTCACGCGG AGTCACGCCG AGGCCCTCCA ATTTCGAAGA
GAACTCTGCA CCCGCACCGC AGGCTATCAG CTCCCCAAGG TTCGGCTTCT ACCCCGCCGT GCAGACCGTG CCCTCTGCCT
ACCCTGCTCC CAACCCGGAA TTCTCTTCTG GGTTAACGAA GAGTGTGAGC AAGAATTCGC AGACGCAGCC ACAGCCTCAG
TCTCAGCCGC AGGCTCCAGC TCAAGCTCCT CAAGTTGCTC AACCGCCCAA CAGTAGTAGC AAAGCCAGCC ACGACGCTAA
GGAGCTCCAC ATGTTCGTGT GGAGCTCCAG CGCCTCACCG GTTTCTGAAG CCGGTGGCCT CCATGTATTC AGTGGAGCCG
ATTTCGGAGC TTCCGACCAA TCGGGCCGCT CCGATCAAGG TGCCAAGGAG ATTAGGATGT TAGTAGCGGA CGAACACCCT
CAAAATGGAG AAGCTAACAA AGCTACAGCA GAAGGAGAAT TTAGGGGTGA AGATTTGAAG TTTCCAGGGA AAGAAGGTGA
ACAGGCGGAG GAAGAAGCAG AGAAAGCGGG CGCCGCCGGG CCCAACAAGC TGGGTTCCAG TTCAACGGCG GAGCTACACC
CGAAATCGGG CGTAGGCGTG GCGGGGAAAC ACATGCCTCC GGCGAGTGTG ATGACTCGTC TGATACTGAT TATGGTGTGG
CGGAAGCTTA TCCGCAACCC CAACACTTAC TCTAGCCTCA TTGGTGTGAT CTGGTCTCTG GTGGCGTTTA GGTGGCATGT
GCACATGCCC AAAATAATAG AGAAATCAAT CTCCATACTG TCTGATGCTG GTCTTGGAAT GGCTATGTTC AGCTTGGGTC
TCTTCATGGC TCTTCAACCC AATATAATTG CGTGTGGGAA CTCAGTTGCA ACATTTGCCA TGGCTGTTCG ATTCCTCACA
GGTCCCGCCG TCATGGCTGC AGCTTCCATC GCTGTTGGCC TACGTGGCAC TCTCTTACGT GTAGCTATTG TTCAGGCTGC
ACTTCCGCAA GGGATTGTTC CATTTGTGTT TGCCAAGGAA TACAACGTTC ATCCAGCCAT TCTCAGCACA GGGGTTATAT
TTGGGATGCT GATAGCTCTA CCAATTACTC TAGTCTACTA CATATTACTT GGTTTGTAAA ATATGTATGC AGTAGTAGTC
AGCACACCAG GACAGAATGA ATGACCCTTT TGAACCTTTT TATACTTTGG GAGTTAGCAT GCATGCCTGG TGACCACAGT
GGATTACGCT GTTATTAACG AAGATGTGGA TCTTCTGAGC TGGGAGAACA AAAGCCACAA ACTAAACTAG TATTCTTAAA
GCAGAGGAGA TCCTCGAGAG TTTCCAAATT TTTTGGAATT TCTGAAAAAA TTGACCAATT GGCCCAAATC CTCATAATTC
TAATCCCCTA TCAAAAGTCC AAAATAGACG CAGTTTTCAA AAGCAGAGAG AGAGGAACAA GTACAGCTTA TGGGAGACAT
AGCAGAGGAA AACAGGGGAA AGCTCGCATG AGCAGAGTCA ATGAAATCTA AAAATGGTTC CCTCCGTATC TGCATTGTAA
ATTTTATTAG AGTCATGTTT GTGTCATCAA GTAACAAAGA CAGCTGAGCA ATTGGGTAGG GGAAATGAAA ATGGAATATA
AGCTGAAGAT TGGTTTCTTT AGTTTTGTTT AGTCATTTGT TTACTTCGAT TTTTATTATT ATATAATGGG TTTGTTTAAG
TTTTGTTTTT GTCTTTGATC AACCGCGG

>Vigan.01G269800.01
ATGATAAGCT GGACCGATTT GTACACCGTC TTGACGGCGG TCATTCCCCT CTATGTCGCC ATGATCTTAG CATACGGTTC
GGTACGCTGG TGGAAGATCT TCTCGCCGGA CCAATGCTCC GGCATAAACC GCTTCGTCGC GATCTTTGCG GTTCCCCTTC
TTTCCTTCCA CTTCATCTCC AGCAACAACC CTTACGCCAT GAACTTCCGC TTCATCGCTG CCGACACGCT CCAGAAAATC
ATCATGCTCT TTGCTTTGGC AATCTGGACC AACTTCACCG CCAACGGCAG CTTGGAGTGG ATGATTACCA TTTTCTCCCT
CTCTACATTG CCCAACACGC TGGTCATGGG TATCCCGCTC CTTATCGCCA TGTACGGCGA TTATTCCGGC CAGCTCATGG
TCCAGGTGGT GGTGCTCCAG TGCATCATCT GGTACACCCT CCTCCTCTTC CTCTTCGAGT ACCGCGGCGC CAAGCTCTTA
ATCATGGAAC AGTTCCCCGA AACCGCTGCT TCCATAGTTT CCTTCAAGGT CGACTCCGAC GTCGTTTCGC TCGACGGGAG
AGATTTCCTC GAAACCGATG CTGAAGTCGG CGACGATGGG AAGCTCCACG TCACCGTTAG GAAGTCCAAT GCTTCTAGAA
GATCCTTCAT GATGACACCT CGCCCGTCTA ACCTCACCGG TGCCGAGATT TACAGCCTCA GCTCCTCCCG TAACCCCACG
CCACGTGGCT CCAACTTCAA CCACGCGGAT TTCTACTCCA TGATGGGGTA CGCTCCTAGG CATTCTAACT TCGGCGCTGC
GGATTTGTAC TCCGTGCAGT CCACGTCACG CGGAGTCACG CCGAGGCCCT CCAATTTCGA AGAGAACTCT GCACCCGCAC
CGCAGGCTAT CAGCTCCCCA AGGTTCGGCT TCTACCCCGC CGTGCAGACC GTGCCCTCTG CCTACCCTGC TCCCAACCCG
GAATTCTCTT CTGGGTTAAC GAAGAGTGTG AGCAAGAATT CGCAGACGCA GCCACAGCCT CAGTCTCAGC CGCAGGCTCC
AGCTCAAGCT CCTCAAGTTG CTCAACCGCC CAACAGTAGT AGCAAAGCCA GCCACGACGC TAAGGAGCTC CACATGTTCG
TGTGGAGCTC CAGCGCCTCA CCGGTTTCTG AAGCCGGTGG CCTCCATGTA TTCAGTGGAG CCGATTTCGG AGCTTCCGAC
CAATCGGGCC GCTCCGATCA AGGTGCCAAG GAGATTAGGA TGTTAGTAGC GGACGAACAC CCTCAAAATG GAGAAGCTAA
CAAAGCTACA GCAGAAGGAG AATTTAGGGG TGAAGATTTG AAGTTTCCAG GGAAAGAAGG TGAACAGGCG GAGGAAGAAG
CAGAGAAAGC GGGCGCCGCC GGGCCCAACA AGCTGGGTTC CAGTTCAACG GCGGAGCTAC ACCCGAAATC GGGCGTAGGC
GTGGCGGGGA AACACATGCC TCCGGCGAGT GTGATGACTC GTCTGATACT GATTATGGTG TGGCGGAAGC TTATCCGCAA
CCCCAACACT TACTCTAGCC TCATTGGTGT GATCTGGTCT CTGGTGGCGT TTAGGTGGCA TGTGCACATG CCCAAAATAA
TAGAGAAATC AATCTCCATA CTGTCTGATG CTGGTCTTGG AATGGCTATG TTCAGCTTGG GTCTCTTCAT GGCTCTTCAA
CCCAATATAA TTGCGTGTGG GAACTCAGTT GCAACATTTG CCATGGCTGT TCGATTCCTC ACAGGTCCCG CCGTCATGGC
TGCAGCTTCC ATCGCTGTTG GCCTACGTGG CACTCTCTTA CGTGTAGCTA TTGTTCAGGC TGCACTTCCG CAAGGGATTG
TTCCATTTGT GTTTGCCAAG GAATACAACG TTCATCCAGC CATTCTCAGC ACAGGGGTTA TATTTGGGAT GCTGATAGCT
CTACCAATTA CTCTAGTCTA CTACATATTA CTTGGTTTGT AA

>Vigan.01G269800.01
MISWTDLYTV LTAVIPLYVA MILAYGSVRW WKIFSPDQCS GINRFVAIFA VPLLSFHFIS SNNPYAMNFR FIAADTLQKI
IMLFALAIWT NFTANGSLEW MITIFSLSTL PNTLVMGIPL LIAMYGDYSG QLMVQVVVLQ CIIWYTLLLF LFEYRGAKLL
IMEQFPETAA SIVSFKVDSD VVSLDGRDFL ETDAEVGDDG KLHVTVRKSN ASRRSFMMTP RPSNLTGAEI YSLSSSRNPT
PRGSNFNHAD FYSMMGYAPR HSNFGAADLY SVQSTSRGVT PRPSNFEENS APAPQAISSP RFGFYPAVQT VPSAYPAPNP
EFSSGLTKSV SKNSQTQPQP QSQPQAPAQA PQVAQPPNSS SKASHDAKEL HMFVWSSSAS PVSEAGGLHV FSGADFGASD
QSGRSDQGAK EIRMLVADEH PQNGEANKAT AEGEFRGEDL KFPGKEGEQA EEEAEKAGAA GPNKLGSSST AELHPKSGVG
VAGKHMPPAS VMTRLILIMV WRKLIRNPNT YSSLIGVIWS LVAFRWHVHM PKIIEKSISI LSDAGLGMAM FSLGLFMALQ
PNIIACGNSV ATFAMAVRFL TGPAVMAAAS IAVGLRGTLL RVAIVQAALP QGIVPFVFAK EYNVHPAILS TGVIFGMLIA
LPITLVYYIL LGL*