GBrowse Details

Vigan.01G267800.01

Basic Information:
Name: Vigan.01G267800.01
Multiple alignment
Variant Information
Position: Chr01:38056053..38059191 (- strand)
Length: 3139
Functional Information:
Description: Similar to Uncharacterized protein. [I1NDA1, Glycine max]
InterPro: Phytanoyl-CoA dioxygenase (IPR008775)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:107.50,41.57,32.50,28.13,29.40,28.55,38.48,21.53
Arabidopsis thaliana homolog: AT2G01490.1
Automatic updates:
Name: NM_001255517 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max phytanoyl-CoA dioxygenase domain-containing protein 1-like (LOC100788875), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:38056053..38056275 (- strand)
Length: 223
Type: three_prime_UTR
Position: Chr01:38056276..38056318 (- strand)
Length: 43
Type: CDS
Position: Chr01:38056698..38056784 (- strand)
Length: 87
Type: CDS
Position: Chr01:38056901..38057045 (- strand)
Length: 145
Type: CDS
Position: Chr01:38057143..38057290 (- strand)
Length: 148
Type: CDS
Position: Chr01:38058010..38058128 (- strand)
Length: 119
Type: CDS
Position: Chr01:38058548..38058616 (- strand)
Length: 69
Type: CDS
Position: Chr01:38058699..38058759 (- strand)
Length: 61
Type: CDS
Position: Chr01:38058850..38058974 (- strand)
Length: 125
Type: CDS
Position: Chr01:38059037..38059082 (- strand)
Length: 46
Type: CDS
Position: Chr01:38059083..38059191 (- strand)
Length: 109
Type: five_prime_UTR

>Vigan.01G267800.01 class=Sequence position=Chr01:38056053..38059191 (- strand)
TAAGAAGGGA GTGCAATCCT ATGCCCATGG GTACCTGAGC AAGTACATTA CGACAACACT AAACATTGAA TCTTAAAAAT
TCGGTTTCTA AGCAAAATCA CTACACAAGA TGACCAAGCT TAGTTCCGAG CAGCTTCAAT TCTTCAACTC TCAAGGTACC
CTTTTTTGGT CTTTAGCATA ATTCCTAACC TCAACCAACA AAATCTCAAT TTTTCAGGTT ATCTTGTGAT TGAATCGTTT
GCAAGTGGCG ATGAGATCGA GTCCATGATG AAGACGATGG AGCAGTTGGT GGATAAGTTT GATTATTCTT CCACCGCTTC
TATTTTCTCC ACCAAGAACC AGGTTACCTT CAACATTTTG TGTTTTCATT TTAAAATTGG ACTTTTTATT TATCTTTTCT
TTCCTCTTAT TCGTGCTCTT TGTTTCCTTC AGCAACAGTT GACTGATGAT TACTTTTTCG ATAGCGTGGA AAGGGTTTCT
TTTTTCTTTG AGGGTATGAA CATAAATTGA TCTTTTCTGT TTTTGAGTAA CTGGGTTTCT TTTAGTTTGA TCTTTTTCTG
TTTCACTTTT GGTAGAAAAA GCATTTGGTG ATGATGGCAA TCTAAAGCAG CCGAAGCAAC TCTCTATTAA TAAAGTTGGC
CACGGTGAGC CTTTTATACT TTGATATTTT ATCTCACTTT TTAGTAGAAA TAAACCTTAG ATGCAATTTA ATTCTTTTAT
GCCTTTGATG TCGTACATCA ATCTTAATTA GAGTTTTACT TTAATAATCC ACAAAATAAA GGGTTGTATT GAAGTTCAAC
ACTGATCACT GAGGTGAAAC TCTAATTCTG ATTGGAAACA ACACTAAGAA CATCTAAGAA ACTGCATATA ATGTTTGTAA
GTAGAAATCG GGTTCTCTCT GTTCACATAA TATGTAATTT AGTTAGTTAG TTTATGACAG TGGGGCCCTG CTTTTGTGCT
GTTGTGCTGA TTGGTGAATG AAAGCGTGAA CTGCGAAACT AGCATTATTC CTTTTAAATT GATTCAATTT CCTATGAATT
GGGTATGCTG TTGATTTGTG CAGCTCTTCA CGAGATTGAA CCGGCATTCA AGAAGTTTTC TTCTTCTGAG AAAATTTCAA
GTTTGATGTA CTCCTTAGGT TACAAGAGGC CTGTAGTCAT GCAGTCTATG TATATATTTA AGGTACAGTT TTGCTTTTCT
GGGACATCTA GTTGCTGATA ATGTAGTTGA AATAACTCAA GTTCAATGCT GTATTTTGTG GCATTATGTA TGAGCAGTAG
ATATGTGAAT TGGTTGAAGT TTGTGTATGT ATGTTCATCT AATTTCCTGG TTTGAGGGGT AAGAGAGACT GGGGGTAAGG
GAGTTGTGTG ATTTGGTTTT CATATTTGTT CTCCAATTTG GAAAATGAAC GTTCTCCACT TTAATATTGT TACCTGCGTC
ACTTGCTTCT TTGATTTGCA ATCAAACTGA CAAATGCTTG AGTGATGCTC AAAAAATGTT GTGTTGTAGT GGTTTATTGC
ATAGAAAATT CTGGTAGAGT TATTCACCTG AGAATATAAC TTACATATCT CTTCCAAAAT GACATATATC TTGTTTAGTT
TTTAATGAAT ATTGAATGTA TGTATTGGTA ATTTTCAAAA TCACTAAAAT ATACTTTTTG ATTTACCGTT TTAGTTTGTT
TTTTATTCCA TACTTCTGAA TTTGATATTG TTTTATGGTC TTTTGTATAC ATTATGGATA TATTTTAGGA TGATTATTTC
AATACTGCTG TGGTTTGAAC CTGAAGACCC AGGCATTTTT CTTACACGTA GTTAACATAT TTACTGGTGT TTCAAATTCA
TGCTATGTAT AGAAGTATTT GATTCCTGGT CACTAACTGA AAATGAAATA TTTATCATCA GCAACCAGGC ATTGGGGGTG
AAGTAGTGCC ACACCAGGAT AACTCGTTTC TTTATACTGA ACCACAAACG TGCACAGGGT TGTGGTTGGC CCTAGAAGAT
GCAAATACAT TAAATGGTTG CCTTTGGGCG ATTCCTGGAT CTCACAAAAG TAACTTTTTC TTACCTTTTG GTTTATTTCT
TACTTGGATC ATTATCCTTT GCTTGGTTCA TATGCTCTAA CATTTTTTCC TTTATGTTTG CTATAGACGG GCTTGTTAGA
AGGTTCTTGA GAGATGAAGA TGGTGTCAAA TTCGATCGAC CATCACCATC TTATGATAAA AAAGATTTTG TTCCTATTGA
AGTAAAAGCT GGTTCTATGG TTGTCATCCA TGGTGATCTT ATCCACCAAA GGTTTGTTAA AACTAATCTC TCCAGAAGAT
GTGTATATCA TGAAGTTTAG AAAGAAATGT GCCTTTGAAG TGTTTTCATA TAATTTATCC TTCTATGCTT TTCTATATGA
ATAACAGCTT TGAAAACCAG TCTCCAAAAT CAAGACATGC CTACAGCTTG CATGTGGTGG ACACCGTGGG CTGCACATGG
GCACCAGAAA ATTGGTGAGT TTAAATCATG GGTAGAATTT GTTTATCAGC GTTCTTAAAT ATTCTCTTGT TTATTTGATC
ATATTACCAA TTCAATACTT CAAAGTTTAT TAACAAATTT TACTTGTTCA ATTTTCTTGA GTTTTTGATT TTCAAGTTTT
TTTTCTTTTA CTTCTGATGG ATTTTGACGA GTCTTTGGAA TTTTTTCTTG TACCATTAGT GCTAACTCTT CCTTGAGTCC
AATAATTGAC ACTTGGAAGT GCAAAAGAAA TGTTGATTTT ATGATAAAGT GGACTTACTA TGTACACTTG CTACTGTACA
TATAAATTTG GACTTTGCAT TTTTCCAAGT GGATTTTGCT AAACACAAGT TTTTCTGTCA AATTTTGTTT CAGGATGAGA
CGAAAAGTGG AGCCTGAACC TCTCTTTGTG AGCTGACTTT CTGTCGAATT CTCTTGCAGT TTAGTGTTTA ATTTGCAAAT
ATAAAGCATT GTAATAATGT CAACCTTCTT CTGGTTGCCA CTGAACACAC TACATTCAAC CTCTTTCCTT TCCTTTGGGA
TATTATACCA ATATCATTAA CAAATATATT AGTAAACCCA ATTATATTTT CCCAGTAATA ATTTTTTATA ATTTCAGTGT
TTCTTTTATA TAGTTTAAA

>Vigan.01G267800.01
TAAGAAGGGA GTGCAATCCT ATGCCCATGG GTACCTGAGC AAGTACATTA CGACAACACT AAACATTGAA TCTTAAAAAT
TCGGTTTCTA AGCAAAATCA CTACACAAGA TGACCAAGCT TAGTTCCGAG CAGCTTCAAT TCTTCAACTC TCAAGGTTAT
CTTGTGATTG AATCGTTTGC AAGTGGCGAT GAGATCGAGT CCATGATGAA GACGATGGAG CAGTTGGTGG ATAAGTTTGA
TTATTCTTCC ACCGCTTCTA TTTTCTCCAC CAAGAACCAG CAACAGTTGA CTGATGATTA CTTTTTCGAT AGCGTGGAAA
GGGTTTCTTT TTTCTTTGAG GAAAAAGCAT TTGGTGATGA TGGCAATCTA AAGCAGCCGA AGCAACTCTC TATTAATAAA
GTTGGCCACG CTCTTCACGA GATTGAACCG GCATTCAAGA AGTTTTCTTC TTCTGAGAAA ATTTCAAGTT TGATGTACTC
CTTAGGTTAC AAGAGGCCTG TAGTCATGCA GTCTATGTAT ATATTTAAGC AACCAGGCAT TGGGGGTGAA GTAGTGCCAC
ACCAGGATAA CTCGTTTCTT TATACTGAAC CACAAACGTG CACAGGGTTG TGGTTGGCCC TAGAAGATGC AAATACATTA
AATGGTTGCC TTTGGGCGAT TCCTGGATCT CACAAAAACG GGCTTGTTAG AAGGTTCTTG AGAGATGAAG ATGGTGTCAA
ATTCGATCGA CCATCACCAT CTTATGATAA AAAAGATTTT GTTCCTATTG AAGTAAAAGC TGGTTCTATG GTTGTCATCC
ATGGTGATCT TATCCACCAA AGCTTTGAAA ACCAGTCTCC AAAATCAAGA CATGCCTACA GCTTGCATGT GGTGGACACC
GTGGGCTGCA CATGGGCACC AGAAAATTGG ATGAGACGAA AAGTGGAGCC TGAACCTCTC TTTGTGAGCT GACTTTCTGT
CGAATTCTCT TGCAGTTTAG TGTTTAATTT GCAAATATAA AGCATTGTAA TAATGTCAAC CTTCTTCTGG TTGCCACTGA
ACACACTACA TTCAACCTCT TTCCTTTCCT TTGGGATATT ATACCAATAT CATTAACAAA TATATTAGTA AACCCAATTA
TATTTTCCCA GTAATAATTT TTTATAATTT CAGTGTTTCT TTTATATAGT TTAAA

>Vigan.01G267800.01
ATGACCAAGC TTAGTTCCGA GCAGCTTCAA TTCTTCAACT CTCAAGGTTA TCTTGTGATT GAATCGTTTG CAAGTGGCGA
TGAGATCGAG TCCATGATGA AGACGATGGA GCAGTTGGTG GATAAGTTTG ATTATTCTTC CACCGCTTCT ATTTTCTCCA
CCAAGAACCA GCAACAGTTG ACTGATGATT ACTTTTTCGA TAGCGTGGAA AGGGTTTCTT TTTTCTTTGA GGAAAAAGCA
TTTGGTGATG ATGGCAATCT AAAGCAGCCG AAGCAACTCT CTATTAATAA AGTTGGCCAC GCTCTTCACG AGATTGAACC
GGCATTCAAG AAGTTTTCTT CTTCTGAGAA AATTTCAAGT TTGATGTACT CCTTAGGTTA CAAGAGGCCT GTAGTCATGC
AGTCTATGTA TATATTTAAG CAACCAGGCA TTGGGGGTGA AGTAGTGCCA CACCAGGATA ACTCGTTTCT TTATACTGAA
CCACAAACGT GCACAGGGTT GTGGTTGGCC CTAGAAGATG CAAATACATT AAATGGTTGC CTTTGGGCGA TTCCTGGATC
TCACAAAAAC GGGCTTGTTA GAAGGTTCTT GAGAGATGAA GATGGTGTCA AATTCGATCG ACCATCACCA TCTTATGATA
AAAAAGATTT TGTTCCTATT GAAGTAAAAG CTGGTTCTAT GGTTGTCATC CATGGTGATC TTATCCACCA AAGCTTTGAA
AACCAGTCTC CAAAATCAAG ACATGCCTAC AGCTTGCATG TGGTGGACAC CGTGGGCTGC ACATGGGCAC CAGAAAATTG
GATGAGACGA AAAGTGGAGC CTGAACCTCT CTTTGTGAGC TGA

>Vigan.01G267800.01
MTKLSSEQLQ FFNSQGYLVI ESFASGDEIE SMMKTMEQLV DKFDYSSTAS IFSTKNQQQL TDDYFFDSVE RVSFFFEEKA
FGDDGNLKQP KQLSINKVGH ALHEIEPAFK KFSSSEKISS LMYSLGYKRP VVMQSMYIFK QPGIGGEVVP HQDNSFLYTE
PQTCTGLWLA LEDANTLNGC LWAIPGSHKN GLVRRFLRDE DGVKFDRPSP SYDKKDFVPI EVKAGSMVVI HGDLIHQSFE
NQSPKSRHAY SLHVVDTVGC TWAPENWMRR KVEPEPLFVS *