GBrowse Details

Vigan.01G258000.01

Basic Information:
Name: Vigan.01G258000.01
Multiple alignment
Variant Information
Position: Chr01:36716390..36719416 (- strand)
Length: 3027
Functional Information:
Description: Similar to Uncharacterized protein. [I1KMA9, Glycine max]
InterPro: Lateral organ boundaries, LOB (IPR004883)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.42,5.75,1.69,0.27,9.12,0.41,16.38, 5.21
Arabidopsis thaliana homolog: AT1G31320.1
Automatic updates:
Name: KT031096 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max clone HN_CCL_198 AS2 transcription factor (Glyma07g35000.1) mRNA, partial cds.
PubMed ID: 26268547 NCBI(pubmed)
Status: Known Variant
Name: NM_001249822 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100306560 (LOC100306560), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001354003 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max LBD domain-containing transcription factor (LBD31), mRNA.
PubMed ID: 28464070 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr01:36716390..36716938 (- strand)
Length: 549
Type: three_prime_UTR
Position: Chr01:36716939..36717265 (- strand)
Length: 327
Type: CDS
Position: Chr01:36719094..36719270 (- strand)
Length: 177
Type: CDS
Position: Chr01:36719271..36719416 (- strand)
Length: 146
Type: five_prime_UTR

>Vigan.01G258000.01 class=Sequence position=Chr01:36716390..36719416 (- strand)
CCACCACCCT CTCTTTCTTT CTCTCTCTCA CACACACACG CCCTCTGTCT TTTCTTCCTT TTCTTTACTT TATTTTCAAC
TATAAATCCT TCTTTTGTTG CTCTACCATT CTCATGTCCT TTTAGAACTT TCAGAAGAAG GGAAACATGA AAGATGGAGG
TAGGAAGCAG GGTGCACCCT CACCCTGTGC TGCATGCAAG CTCCTTAGGA GAAGGTGTGC TCAGGATTGT GTTTTTGCTC
CTTATTTTCC TGCTGATGAA CCCCACAAGT TTGCCAATGT TCACAGAGTC TTTGGTGCCA GCAATGTCAA TAAGATGCTT
CAGGTTCTTT CCTCTCTTAT ATTAAATGCT TCATTCCTTC AACATTTTAC TTTTCAGCAA CTATGATCTT GTTTCCTAGG
TCGCTTTTTA GTTTTTTCTT TCAATTCTTT TAGTGAATAA AATGTAACTA AGAAATATTG AAATTGATAA GTCAAGTTTC
TGAATAAAAT TAGTATTCAA TAAAATGAAA AAATAATAAC GTATATAACT CAAAAAACAG TTTTTTTTTT CTCTTTCTCA
ACCACCTTTC AAGCATATGA ACTCTATTAG GTTCAAAGAC TGCAGACTTT CTTAACGAAT TTATGGTGTC TGTTTTTGGT
ATAAAGATCA ACAACCTTGC AGACTAGTGC GACGCTTTCC TTGACCATTG CTCAATCTTT CACATTATTT TCTTGTAAGC
TTTAACATGC TTCTGTCTTT TCTTCTTACT TTAAACTATT TACATCATAT ATATACATGG TAGCTAGTAC ATTTGTTTAT
GGCATGTTTC TATCTTCTGC CGATTATTTT CCATGGCATA TAGAAATTCC GTAATATGAT ATACGAAAAT GATTTGGTGT
GAAAAAGTTT GAAAATAATA CTAGCTTATT TATTTGTATG CATTAGACAA AGTTGTATGT ATCGGTGTGT GGAAAATATA
ATATAGAATT ATTGGTACGT TGAATTAAGC TTTGGAGAGA AGTGATTGTG AAAAACCACG AATTGATACT TTTTTTTTTC
TAAGTAGCCC TTGAAAAATT AGAAAAGGTG GAGAAGATTA GGCATTCGGC GCCTTCAAAC CTCACATCTC ACGTCCTAAT
CCCTTTGTCT GCTTTTCCAT TCATTCATAT TTCAATATTA GGTCAGTCTC ATCTTTTGGT CTGCCATGTG TTCGTTAAAA
ATAAAAAAGA ATAAGACAAA TGAAAATTAA AAAAATAACA AATCTTATTT GAAAAAGTTT ATGTGTAGCC TTATATTTAT
TTAGATTTTT GAGAAACTAA AATATTGTAT CTCTTTCTTC ATGGATCGTA TCTTGGGCCA CCCAATAGGA GCTTCAAAAC
GTGGTTTTGT CACCAAAAGT CAGGGTCAAG CACAACACAA AGCGAAACTT AACAAGCAAC GTACGTGCGT GATTGTGTGA
AACCACGTTT AAGAATCCAA ACTCCACTTC ACCTTCTCTT GTCACAAACC AAAAGAAAAA CAAATTATTG AAGTAACATC
CTGCTTCTGC ACCACGTGAA CCTGTTTTTG TCGTAAATTT TTTAATCAAA TCCATTCAAT AAAATTACTC ATTTCGTTGT
CAAACATCAA ATATTGTAAC TTATCGGATC CTTTAAGATG CTTTTATTGC TAAAACAATT TCATTAACTA CTTATCGGGT
CCTTCTAAGT ACTCAGTTAA ACTTGAGAAA TTTAAAAAAT ATATATATTT AAAATTTGAC GAACCTTTTT CTCTTGATCT
TCTTCATGTC CCTTCTCTTC AGCAACGACT TTTTATATTA TATACGAATA AATGAAACCT AGTGAAAGGA TAGTTTACTG
ACTAGAAAAA GAATTGTTAA GTAATTAAGG ATGCTTTTGT TAAAAAGTTT AACGCAGAAG ATAAATTGAA CGTCTTAAAA
AGTATCCAGA AAAACTCCAA AAAAGGTGAA AGTACTACTG TTCAAGCATA TGATCAAACA GTTATAAAAG TAACCAGTGA
AAGTGACATT AATGTTATAT CAGAAACTTT TTCTTCATCA GTTATTTAAT TGGTATATGA GTATATATAA TTTGGAGGCT
AACAAAATGA AAAATTGATG GTGATTAAAT TAATGTTATA AGTTTTAAAT TTATGATGGT GTGTGTTACA GGAGTTACCA
GAGCATCAGA GAGGAGATGC AGTGAGCAGC ATGGTGTATG AGGCAAATGC AAGAGTGAGG GACCCTGTGT ATGGGTGTGT
GGGGGCCATT TCATCTCTTC AGCAACAGAT TGATGTGTTG CAGACCCAAT TGGCAGTGGC TCAAGCCGAA GCAGTGCATC
TCAGAGTGCG TCAGAATGCA TCTCTCTACA GCCCCACTAG CCCTACCAAC ACTGCTTCTC CATCTTCCAA GATCATTCAC
TCACAACCCA AACCTATTTT TGACATCGAC ATGGACATGG TCGTCGACCA CACCACCTAC ACTGATTCAA TCTGGTGATC
CATGCTACCA CCTCTTTTTA TATTCTTACT ATTATATAAT ACTTAGACAC AAAACCTATA TCAGACTAAA GTAATGCATT
CTCTATACTT TTACTTTCAT CACTGCTAAA ACAATGCCTT CTTTATTATC GTTATAAAGT TTGTTGGAAA CCGCAAAAAT
TTCACAGGTT TTTGTGATTT CTAATGGATT TTAAGCAATA ATAAGAAATG TGTTAATGTT GAAAAGTGAT TTCTCATTGT
AGAATGGAAG TAGGGTTCTA GAAATAGTGG TGATTGCGGC GGTGGCGGTG AGAGCTGTGG CGGACACTGT TCGCCCGCTT
AATTAGTTTG GTTTGGAAAA TAGATTTTTC TTGATTACCT GTTGACAATA TATGTGGTGT ATATATTATG GTTATGTGGT
AAGGGACTTT TCTCCTGGAC AAAGGTTTCG TGGACTTTTA TGTTGTTTTT CTGTGGTGCC CTATAGACAC ATTGATTTTC
ATTTGTACTA CGTTGGGGCC TTCACTATAT ACAAGATATC ATTTTTATGT TTTAGTATCA ATGTCGA

>Vigan.01G258000.01
CCACCACCCT CTCTTTCTTT CTCTCTCTCA CACACACACG CCCTCTGTCT TTTCTTCCTT TTCTTTACTT TATTTTCAAC
TATAAATCCT TCTTTTGTTG CTCTACCATT CTCATGTCCT TTTAGAACTT TCAGAAGAAG GGAAACATGA AAGATGGAGG
TAGGAAGCAG GGTGCACCCT CACCCTGTGC TGCATGCAAG CTCCTTAGGA GAAGGTGTGC TCAGGATTGT GTTTTTGCTC
CTTATTTTCC TGCTGATGAA CCCCACAAGT TTGCCAATGT TCACAGAGTC TTTGGTGCCA GCAATGTCAA TAAGATGCTT
CAGGAGTTAC CAGAGCATCA GAGAGGAGAT GCAGTGAGCA GCATGGTGTA TGAGGCAAAT GCAAGAGTGA GGGACCCTGT
GTATGGGTGT GTGGGGGCCA TTTCATCTCT TCAGCAACAG ATTGATGTGT TGCAGACCCA ATTGGCAGTG GCTCAAGCCG
AAGCAGTGCA TCTCAGAGTG CGTCAGAATG CATCTCTCTA CAGCCCCACT AGCCCTACCA ACACTGCTTC TCCATCTTCC
AAGATCATTC ACTCACAACC CAAACCTATT TTTGACATCG ACATGGACAT GGTCGTCGAC CACACCACCT ACACTGATTC
AATCTGGTGA TCCATGCTAC CACCTCTTTT TATATTCTTA CTATTATATA ATACTTAGAC ACAAAACCTA TATCAGACTA
AAGTAATGCA TTCTCTATAC TTTTACTTTC ATCACTGCTA AAACAATGCC TTCTTTATTA TCGTTATAAA GTTTGTTGGA
AACCGCAAAA ATTTCACAGG TTTTTGTGAT TTCTAATGGA TTTTAAGCAA TAATAAGAAA TGTGTTAATG TTGAAAAGTG
ATTTCTCATT GTAGAATGGA AGTAGGGTTC TAGAAATAGT GGTGATTGCG GCGGTGGCGG TGAGAGCTGT GGCGGACACT
GTTCGCCCGC TTAATTAGTT TGGTTTGGAA AATAGATTTT TCTTGATTAC CTGTTGACAA TATATGTGGT GTATATATTA
TGGTTATGTG GTAAGGGACT TTTCTCCTGG ACAAAGGTTT CGTGGACTTT TATGTTGTTT TTCTGTGGTG CCCTATAGAC
ACATTGATTT TCATTTGTAC TACGTTGGGG CCTTCACTAT ATACAAGATA TCATTTTTAT GTTTTAGTAT CAATGTCGA

>Vigan.01G258000.01
ATGAAAGATG GAGGTAGGAA GCAGGGTGCA CCCTCACCCT GTGCTGCATG CAAGCTCCTT AGGAGAAGGT GTGCTCAGGA
TTGTGTTTTT GCTCCTTATT TTCCTGCTGA TGAACCCCAC AAGTTTGCCA ATGTTCACAG AGTCTTTGGT GCCAGCAATG
TCAATAAGAT GCTTCAGGAG TTACCAGAGC ATCAGAGAGG AGATGCAGTG AGCAGCATGG TGTATGAGGC AAATGCAAGA
GTGAGGGACC CTGTGTATGG GTGTGTGGGG GCCATTTCAT CTCTTCAGCA ACAGATTGAT GTGTTGCAGA CCCAATTGGC
AGTGGCTCAA GCCGAAGCAG TGCATCTCAG AGTGCGTCAG AATGCATCTC TCTACAGCCC CACTAGCCCT ACCAACACTG
CTTCTCCATC TTCCAAGATC ATTCACTCAC AACCCAAACC TATTTTTGAC ATCGACATGG ACATGGTCGT CGACCACACC
ACCTACACTG ATTCAATCTG GTGA

>Vigan.01G258000.01
MKDGGRKQGA PSPCAACKLL RRRCAQDCVF APYFPADEPH KFANVHRVFG ASNVNKMLQE LPEHQRGDAV SSMVYEANAR
VRDPVYGCVG AISSLQQQID VLQTQLAVAQ AEAVHLRVRQ NASLYSPTSP TNTASPSSKI IHSQPKPIFD IDMDMVVDHT
TYTDSIW*