GBrowse Details

Vigan.01G248000.01

Basic Information:
Name: Vigan.01G248000.01
Multiple alignment
Variant Information
Position: Chr01:34321519..34327100 (- strand)
Length: 5582
Functional Information:
Description: Similar to IMPACT family member in pol 5'region-like. [XP_004509680.1, Cicer arietinum]
InterPro: Impact, N-terminal (IPR001498)
Ribosomal protein S5 domain 2-type fold (IPR020568)
Impact family (IPR023582)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:4.19,4.81,3.96,12.22,6.04,6.61,3.39,5.12
Arabidopsis thaliana homolog: AT4G38090.1
Automatic updates:
Name: NM_001255377 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100820330 (LOC100820330), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:34321519..34321820 (- strand)
Length: 302
Type: three_prime_UTR
Position: Chr01:34321821..34321979 (- strand)
Length: 159
Type: CDS
Position: Chr01:34322579..34322632 (- strand)
Length: 54
Type: CDS
Position: Chr01:34322773..34322878 (- strand)
Length: 106
Type: CDS
Position: Chr01:34326090..34326205 (- strand)
Length: 116
Type: CDS
Position: Chr01:34326613..34326654 (- strand)
Length: 42
Type: CDS
Position: Chr01:34326742..34326969 (- strand)
Length: 228
Type: CDS
Position: Chr01:34326970..34327100 (- strand)
Length: 131
Type: five_prime_UTR

>Vigan.01G248000.01 class=Sequence position=Chr01:34321519..34327100 (- strand)
CTCAAAAAAT TACAAAAAAA AGAAAGAGGA TGAGGCAAGG AGTGGGAGAA AGAGGCCATG GCTTCTGACG ATTGATTCAT
TATTTATAGC TCTGAGCGAC GCCGAAGGAG GAATATTTTG CAGACAGATA GATGCCTGTG TCGATAACGG TACCGAGTAC
TCAGCACCGC GTGTTCGCTT CACTCTTTGC CATCGCCAAG GCCAACAAAA CCACCATGGC CAGCACCAGC AGTTCTGTTG
GAGCCTTCAC CACAATCCAA GAGAGGGTCA CTTTCGAGAA AGAGATCAAG AAAAGCAAGT TCATTGCCAT TGCTGGCCCC
ATCGCCGATG AAAAATCCGT CATGTCTTTC CTTTCTCAGG TTCATTTCCC TTCACTCTTT TCCGCTTATT TTACTCTCTT
TTTTGTTTCA CATTGCTTTT AAGTTTTTGG CTTCGTTTAT TATTAGGTCC GGGATCCACG TGCCACCCAT AATTGCTGGG
CTTACAAGGT ACAGTAAAGG ATTGCTTTCT TACTTTGATG AAACAATCAA TAATGTTTGC TTGTATTTTT GCCACTGCAT
TATGTTTTGG GGGTCTCTGA ATATTTATAG TTGGAGATTT ATACTTTCTG GTCCTAACAG CATGCATTGA GGTATCATTT
TTCATTGTGC CAGTTATAGT TCATTCATCA GTTTCAACCT AAAGGTGTCA TCATACTTTG CTCATTAGCT AATTGATTTA
CATACATATT AAGGGTTTTG ATTGGACTTT GAGAACATAA AAAAGAAGAT CATAAGTGAA GATAGAAACC AAAATGACAC
ATATGCATAA AGTAGGAGGT AATGTGTTGC TACTCGTCTA CACTTTACTA TCTTTTGCTC ATATGTGTTT TTTTATTTTT
TTTTTTGTAT GACAGGTGGG AGATCAATAC CGGTCCAATG ATGACGGTGA GCCATCAGGA ACAGCTGGGA AACCAATACA
AACTGCTATT GATTCTTCAG GAATAGACAG AGTAATGGTA GTGGTGATCA GGTTAATCTT TACCTTATAA TTCGCATTTG
CATATTAATG TCCACAACTT TGAATCAGTT AAATGTTTCG GTTTGCATAT GTTTGATGTC TACCATCGCC CCCACCCCAT
TTCGTGAAGA AAAAAGCAAA AGAAAATTGT TTTTTTGACA CCTTGATGAA ATGTTACAAC CTTCAGGTGA TCAAAATTAA
GGATATTCTT TTCCCTTTAC GAAGTTCTTC TATAATTGTG GGGTAATCTG TGTATAAAGG TAAGTTCAAA ATATAGAATC
CATTTTGTGC TTTAGCCTTC CCAGTCTTCC TCATAGTTGA GTTAATGATA AGATAATCAT TAGAAGAAAA AATCAAATGC
AAGGTAGAGA GGAAGTGAGT TTGTTAACAG ATTAAAATGG AATAAGTTAA AATTATAAAG AACATTATGA AGAGAGAAAT
GAGGGGATAA AATCTCATTA CCAGCAAAGT TAACCATAGA ATGTTGACCA TTTGGAAGAG AAACATGTAT AGGTTGGATT
TTTTTTAAAG GAAAAGAAAC ATAACGAGGA TGTTATATGG TTAGTATATC CTGAGTCTAA AGTTCACTGG GCTAGGAGAG
GTATTGGGAT TCCAAGTGTG AGTCTAAGTC CCACATTGAA TAGAAATGAG AAAGTAGAAC ACTCATTATA TAAATGTGAA
AGACTCATTA ACCCATTGCC TTAAGGTTTT GGGTAGAGAG TGATGTCAAT CCCTTATATG GTTGGGCTCA TATCTTATTG
GTGTTTGTAT CTCCTCGGTG AACGTCCTCC TTAATAGACC CAACAAGAGG TACCTGAAGG TTGAGGTGAA GTGTTAACAC
CATGGCTGCT GACCAAGTTG GAAGTAAATA TTGTAGGGTC ATCAGGAGAA GATATAATCA TGTTAGAGGC AGATTTTGTG
GTTCAATAAC CTTGGGGAAA CCATGCTTAA AGATTCATGT TTTGATAGTA TGATTGGTCT TTTTGCAGTG AATGTGTTGC
TTCTTTGATT TTTTTTCTTG GAATTGGATC AATCCCTTCC TAAAGAGTTT GATGAAGGCA GAATTTGGGT TGCCAAAAGC
TAAAGTTTCA TCTAAAATCC CAACATTCAG TTGACATTCT TGTTGGACCA CCACAGAAAA ATCATTAGTA GCAAAAAGGA
TTGAGAAGGA AGATTTGAGA TTGGACTGTA GAATAGTTGT TATCGAACCC TTGAAGAAAG TACAAAACAA AATCATTGTA
CCTTTGTTCT TTGACACCAT ATATGTGTTG TGCAAGAATT AGAGTCACAT GGAGTTAGTG AGTGAACGCT AAAGTTGCGA
TATTCTTCCA GAAGGATCTT GCATTTGGTG AAGTAAGTGG TATTAGAGGA ATCACCTTGT TTAAGAGAAG TTATATAAAA
TGAAATGGGA GATTCAAGCA TTGCCATCAG AGGTAGGGGT GGGCAAAATT GTATGGGTTC TTACTATCTA TTAGAGGTAG
GGGTGAGCAA AATTAATTGA AATGTAATGA ACTATCAATT AATTGCACTA TATTGAACTA AAAAAATTGA ACTGTTTATA
ATAAAAACTA AATTGTACCA TTTTATAGTT CAGTTTTAGA AAACTGAACC TCTAAAGTTA CAAGTCAGTT AACTATTTAT
TGACTTAAAA CTGTTTTGTT TTATACTTTT TACATGTTTG AGAGTCTCTA AGTTGTAATT CAGTTTAGCT ACGGTTGACT
CAACCAAACT TTGGTCAAGG ACAACTCGAC CAATTTTCTT CAATGGCTGA CTTAGTCGAA TTTTGGTTGG GACTAACTCG
ACCGAGGTTC GCTCATTCTC GACTTGGCAG AATTTGATCG CTTTTTGGTT GGGACTATCT CGACCATTCG TGGTCGTCTT
GGCCGAATTT CGTTGATTTT CAACCAAGCC GTACTCCGTT GAATGCGGCC AATTTCAATC GAGACCAACT CGACTAAGTT
TTGATCATGG CTGTCTTGGC TGAATTTTGT CGATTTTCGG CTTAGGTCAA TTCAGCCAAA TTCTACTGAT TTTCGGTCAG
GATCGTTTCA AACGAGTATC TGTCATGGCC GTTTCAACCA AATTTGGCCA ATTTTCGAAC GAGGCTTACT TGGCCAGATT
TCGGTTGAGA CCGACTTGAT TGAGTTTCGT TTGTGGTCTT CTCGGCCTAA TTCGACCGAA TTTAGGTCGT GACTGACCTC
ATCAAGTTTT GACTGTGCCC ATTCCAGCCA AATTCGATTG AATTTCAGCC TCGACCCATT TCGACATTTT GTTCAACCTT
TGGCCTGACC TAACTCATCT CAACTTTTTA ACTTTGTTGT TTATATGGAA GAACCTATGT TATTTACGTA AAGACAAATC
TTTCCTATCT GCTTAATTTT CTTTTTGTTT AAGACTTTTA AATAATAGTT CAGTTCAGTT TATTAGAACA AAAAGTAGTT
TAGTTCGGTT CGTCTAAACT AATTTTATAT TTAGTTTAGT TCAAACAAAC TATTTTTAGT TTAGTGCAAT TAATTTTGCC
CACTCCTAAT TAGAGGCGAT ATCAATGTAG ATATACTGTG AGCAATTTTT GGGGAAACTA AATGGAGGAG CCATGATAGA
ACTAGGGTAT TGCAATGTTT CTACAATGCA AGCTGGAAAT CATTTGAAGT GGGTTTTTTG AAAGTTCCAC CTACAAAAGA
GAATTTGTTT TTCATCTCCA ATGTTGTCAC CAATAATAGG ACCAGTTATG ATAATTGGTT CTGTCAAGGA CAAGGGAAAC
AATATTGTGG GATGAGTTTT CATCAGGATG TATGTAGTTG TGGATGACAG CATAAAGAGA GGCAGTGGTG ACTGTCATGT
TGCAGAACAA CCAATAAGGA GAAGGAGAAG AAAATGAAGA AGGGTAAAAA AGAAGCTTAT TAGAAACTCT ATTAGTATTA
GAGGATTTCT CCAAAAGAAA AACTGAATTG CATTCAAAAG TAGAGGGACA TGTATAAAGT TTTGATTACA AGATAAAAGC
AAATAAATAC ACACACACAT ATAACAACTA TAAAAACTAT TAACAAACTT AAAACAGAAA GCTAACTCTT ATACATTCAC
CAAAAACTTT AAGACTATTA TTGGCATGTT CTTTTTGATG GTTTTGTACA TAAGCATATG TTATGTGTAA AAGCACTAAG
CTGTTTTATT TTGATGATGG ATTTGGAATA TAATTTGTAT TGTGATCTAT ATTAAATTTC AGGCATTTTG GGGGTATCAA
ATTAGGAACT GGGGGATTGG TCAGAGCTTA TGGAGGAGTT GCATCAGAAT GCTTGAGGAA TGCCCCAACT TGTCTTGTGA
AAACAAAGGT GGTTTTATTT TTGTCTGCAA TGCATCTTTA GTTTTAGTTA TACCCAGGTC TCAGCATTTC ACTTTCTTTA
AGGTTTTCTG AACACATTAA GCTTGTTTAT GATGTATTTA TTTATGAATA ATCTTGTAAA AAATGTAGGT GCCAATGGGT
GTAGAGGTTC CCTTCGACCT ACTTGGAGTT CTCTACCATC AGGTTAGTTC TGGCTACTGA TGATTTCCTG ATATTGAAGA
GTCCTAAGTT AGACTTGGAT TTGACTGAAA AAAACTGATA AGTAAGGAAC AAGATTTGGA TATTCAAGTT TTTTTGTAGC
AACAAGTCTA ACTTGAGAAA CACATTTCAA TTTCTACTTA TTCACTCCTT GATGTCAGCC TATTATGACA TGTTTGGTAA
CATGGTGAGT TGAACTTCCT GTGATTTTGT AAAGCAAACA ACTAGTTAAT TTCATGGTGA CTTCATCGTG ATTTTATCCT
CAACTTGGAT TCCTACAGTC AGTCATACAA ACACATTATA TGTATAAACT GCATTTTTAA CCTCTCCCTT TTAATGTTTT
TGCTGAAAAA GAAAATTATT GGTTCAGAAA TCATAGGTTA TCTTTGATTT GATGTCGTTA ATGCAATGAT ATCAATCTAC
TGCTGGCTGG TACTTGTGCT TGAAATGGTA AGAAGTGTAT AGAAAAAAAA AAGCTAGACC CTTGCAATTA CAGCAAGTAT
ATTTTTCTTA CAGCAAGTGG ATTGAGTTGA GTCTAAATGT TTCCGCATCT ATTGCTCATT TTCTTTTTAT TCTTTTTTCA
GGTGCAATCT TTTCATGTGG AAGACATCAA GCAGGATTAT GATACCGGTA AAGATGGCAT ATCTATGGTT ACTTTTAAAG
TTGATTTTGA CCAAGTTGAC AAATTGGAGG ATGCACTGAA AGCCAATTGT AACAGAGAAT TGAAGTTTTA TATGCGGTGA
AACATGATCA CATGAAATCA GTCTTAGGAT TTTGATTATA TTTTTCTTAT ATATGGAAGA TACTTCTTCA CCTGAAGATG
GGATGAACAG GACATCTCCA GGACCTTGAC TAATTTGAAA ATGAGGAAAC TCATAATAGT TTAAAAACTA GAAGGCATTT
GTTTGTAATG TACTGATAAT GTTGCATAAT TTGTAAATTC AGTAGAAGTT ACCTAGGGTA TAATTTATAC AGAAGCTGCA
CAAAATTGTA CTCTTTCTGG ACTTATAATT TAAAAGTAAC AAAAATTAAT CGTGGAATCA AA

>Vigan.01G248000.01
CTCAAAAAAT TACAAAAAAA AGAAAGAGGA TGAGGCAAGG AGTGGGAGAA AGAGGCCATG GCTTCTGACG ATTGATTCAT
TATTTATAGC TCTGAGCGAC GCCGAAGGAG GAATATTTTG CAGACAGATA GATGCCTGTG TCGATAACGG TACCGAGTAC
TCAGCACCGC GTGTTCGCTT CACTCTTTGC CATCGCCAAG GCCAACAAAA CCACCATGGC CAGCACCAGC AGTTCTGTTG
GAGCCTTCAC CACAATCCAA GAGAGGGTCA CTTTCGAGAA AGAGATCAAG AAAAGCAAGT TCATTGCCAT TGCTGGCCCC
ATCGCCGATG AAAAATCCGT CATGTCTTTC CTTTCTCAGG TCCGGGATCC ACGTGCCACC CATAATTGCT GGGCTTACAA
GGTGGGAGAT CAATACCGGT CCAATGATGA CGGTGAGCCA TCAGGAACAG CTGGGAAACC AATACAAACT GCTATTGATT
CTTCAGGAAT AGACAGAGTA ATGGTAGTGG TGATCAGGCA TTTTGGGGGT ATCAAATTAG GAACTGGGGG ATTGGTCAGA
GCTTATGGAG GAGTTGCATC AGAATGCTTG AGGAATGCCC CAACTTGTCT TGTGAAAACA AAGGTGCCAA TGGGTGTAGA
GGTTCCCTTC GACCTACTTG GAGTTCTCTA CCATCAGGTG CAATCTTTTC ATGTGGAAGA CATCAAGCAG GATTATGATA
CCGGTAAAGA TGGCATATCT ATGGTTACTT TTAAAGTTGA TTTTGACCAA GTTGACAAAT TGGAGGATGC ACTGAAAGCC
AATTGTAACA GAGAATTGAA GTTTTATATG CGGTGAAACA TGATCACATG AAATCAGTCT TAGGATTTTG ATTATATTTT
TCTTATATAT GGAAGATACT TCTTCACCTG AAGATGGGAT GAACAGGACA TCTCCAGGAC CTTGACTAAT TTGAAAATGA
GGAAACTCAT AATAGTTTAA AAACTAGAAG GCATTTGTTT GTAATGTACT GATAATGTTG CATAATTTGT AAATTCAGTA
GAAGTTACCT AGGGTATAAT TTATACAGAA GCTGCACAAA ATTGTACTCT TTCTGGACTT ATAATTTAAA AGTAACAAAA
ATTAATCGTG GAATCAAA

>Vigan.01G248000.01
ATGCCTGTGT CGATAACGGT ACCGAGTACT CAGCACCGCG TGTTCGCTTC ACTCTTTGCC ATCGCCAAGG CCAACAAAAC
CACCATGGCC AGCACCAGCA GTTCTGTTGG AGCCTTCACC ACAATCCAAG AGAGGGTCAC TTTCGAGAAA GAGATCAAGA
AAAGCAAGTT CATTGCCATT GCTGGCCCCA TCGCCGATGA AAAATCCGTC ATGTCTTTCC TTTCTCAGGT CCGGGATCCA
CGTGCCACCC ATAATTGCTG GGCTTACAAG GTGGGAGATC AATACCGGTC CAATGATGAC GGTGAGCCAT CAGGAACAGC
TGGGAAACCA ATACAAACTG CTATTGATTC TTCAGGAATA GACAGAGTAA TGGTAGTGGT GATCAGGCAT TTTGGGGGTA
TCAAATTAGG AACTGGGGGA TTGGTCAGAG CTTATGGAGG AGTTGCATCA GAATGCTTGA GGAATGCCCC AACTTGTCTT
GTGAAAACAA AGGTGCCAAT GGGTGTAGAG GTTCCCTTCG ACCTACTTGG AGTTCTCTAC CATCAGGTGC AATCTTTTCA
TGTGGAAGAC ATCAAGCAGG ATTATGATAC CGGTAAAGAT GGCATATCTA TGGTTACTTT TAAAGTTGAT TTTGACCAAG
TTGACAAATT GGAGGATGCA CTGAAAGCCA ATTGTAACAG AGAATTGAAG TTTTATATGC GGTGA

>Vigan.01G248000.01
MPVSITVPST QHRVFASLFA IAKANKTTMA STSSSVGAFT TIQERVTFEK EIKKSKFIAI AGPIADEKSV MSFLSQVRDP
RATHNCWAYK VGDQYRSNDD GEPSGTAGKP IQTAIDSSGI DRVMVVVIRH FGGIKLGTGG LVRAYGGVAS ECLRNAPTCL
VKTKVPMGVE VPFDLLGVLY HQVQSFHVED IKQDYDTGKD GISMVTFKVD FDQVDKLEDA LKANCNRELK FYMR*