GBrowse Details

Vigan.01G215900.01

Basic Information:
Name: Vigan.01G215900.01
Multiple alignment
Variant Information
Position: Chr01:28321187..28323741 (- strand)
Length: 2555
Functional Information:
Description: Similar to transmembrane emp24 domain-containing protein p24delta9-like isoform X2. [XP_004516569.1, Cicer arietinum]
GO: Biological Process: transport (GO:0006810)
Cellular Component: integral to membrane (GO:0016021)
InterPro: GOLD (IPR009038)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:29.77,42.09,45.03,30.76,85.43,130.49,82.15,32.10
Arabidopsis thaliana homolog: AT1G26690.1
Automatic updates:
Name: NM_001250194 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100499866 (LOC100499866), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:28321187..28321586 (- strand)
Length: 400
Type: three_prime_UTR
Position: Chr01:28321587..28321731 (- strand)
Length: 145
Type: CDS
Position: Chr01:28321876..28321952 (- strand)
Length: 77
Type: CDS
Position: Chr01:28322957..28323166 (- strand)
Length: 210
Type: CDS
Position: Chr01:28323286..28323513 (- strand)
Length: 228
Type: CDS
Position: Chr01:28323514..28323741 (- strand)
Length: 228
Type: five_prime_UTR

>Vigan.01G215900.01 class=Sequence position=Chr01:28321187..28323741 (- strand)
GTTTGACAAT CGACATGGAC ATCGTGGTTG TGTTGTGCAG CTGCAACAGT AGGTGTAGTA GTTAGCACCC TGTTTGGTTT
GGTTAATAGT TCAATTACCA TATTAATTAT TTCTCATCCA TCGCTGCTAA ATCTCTTTTG ATTCTTCTTC TCCACCTTCA
CTTCACGCCC ATAACCTAAT CTCTGCTAAC CCACTTTTCT CTGTCGCCAA ACACACCATC CATTCATCAT GTTCATCATG
ATTGGGGGAA ACCCCAGACC CCTTTTGCTC CTTTCGCTTC TGCTTTTGGT GTTCTTTTCT TCCTCAACCC AATCTCTTCG
ATTCGAACTC CAATCTGGCC ACACCAAATG CATATCCGAA GACATCAAGA GCAATTCCAT GACGGTCGGC AAGTACCTTA
TCGTCAATCA CAACGAGGGT CAACCTCTGC CCGATTCCCA CAGAGTCACC GTTCGGGTAT TTTCATAAAC CCCACTGCCA
AAAATTGAAA CTTTTTCGGG CCCAGTAGTG AATCGGATCG TGTTCTCTGG TTTCTCGTTA AATGCTAATC CTGCTTCTTT
TTTATTTTTT GTTAGGTGAC TTCGTCGTAC GGGAACAACT ATCACTACGG GGATCGCGTT CAGACGGGGC AGTTTGCGTT
CGCGGCAGCG GAGGCTGGAG ATTACATGTC TTGTTTTTGG GCGATAGATC ACAATCCCCC GATAACGTTG ACTGTGGATT
TTGATTGGAA AACCGGTGTA GCAGCCAAGG ATTGGTCTAA TGTTGCTAAA AAGGGGCAAA TTGATGTGAG TAATCCGACA
CTACTGTGTT TCTAGCGGTT AATTTTTGTG TAGAGTATAG TGTTATGATT TCTATGCTGA AAGATTTGGA GAAAAGATGA
ATTTGTTTTG CAAGATTTAC TTGGTAGTTG CATTCCAACA AATAGTTTTC GTAAGAGAGC TTATTTGAAT GAATTCAGTA
TTACTATGAG GATCTCATGG CAAATAACTT GAAAGAGTTG GTTTTTAACC GAGTAAAATT ACATAGTGTG ATCCATGAAG
GATCTCTTCT TTTAGGATAA GGTTTTGTTG CTGTTGTTGT GTTACTCATG TACAACTATA AGTCGAGTCT TTCAGTCAAT
TACCTAGCTT ATGCTGCATA TACTGACAAG AAATGAATGA TCCTCTTTTT TTCATTTACT GCCTCAAGCT CAATCTAATC
TGATCAATCA AGTAATGTCT GATTTCCCTT ACCAGTGGTA GAAATCTGTA TTAGTACTAA ACATTAGTCT CACTCATGAA
ATTTCTAGTT ATGGTAGGCT TATAGGGCAT GATACGTACC TAATCATGGA AATCGTTTTA CTTTATAATG TGAATATTGA
ATGGAAACCA CATTCATCCG TACAAATGTG TCACATATTT TCCCTACCTA TAAATTTTTG TCTACCTCCC ATTTATTTTA
TTTTTATAAG TGGTAGTCAG CTCTTTTTTC TTTGGCTTAT TCTCTGTTTA CAAATTTGGC TTTCTTGAAT GATTGCATTA
TTATTTTAAT TTGTATTGTT CCTCCACACT ATCTATCTAT TTTCTGGAGT TTACTTCAGT CCGGTTGATT TCACTAAAAT
TTATGCCATA TTCTTGAACA AACCAAAACC CACTCAAAGC CTTCCCATCC CACCCATTTG TTACTTGTGG CATAACGTAA
CAGACTCTTT GATTTTCAAT TACATTGCAA GAAGTTGCAA TATTTGTTGA CAGAATGTTC GATAAAAGAA AATAAAAATT
CTCATATCAA TTTAATTCAC CTATACCAGG TAATGGAGCT AGAGCTAAGG AAGCTGCAAG ATTCTGTTGC TTCCATTCAT
GACGAGATGT TTTATCTTCG TGAAAGGTAA CCAAGCATTG CCTGAAAATT TTTAATTGAA TACTCTGACA TGGGAAAGTG
AATAAAACAT TATTCTTGTT TCTGGAATTA CTTATTGATG GAATATTGTA AAATCATTAT TCTTACTATT TTGTGCCATT
CAATTTGCAG AGAAGAAGAA ATGCAGGAAC TGAACAGGGC AACCAATAGC AGAATGTTCT GGCTGAGTTT GCTTTCGCTC
TTTGTCTGCT TATCAGTAGC AGGGATGCAA CTATGGCACC TGAAGACATT CTTCGAGAAA AAGAAACTCA TTTGAAATTT
TGTGATAGTT TACATTTTTC CTATGTGATC TTGTAAAATA TTCCAGCATT AATTTATCCA GAGGATACGC ATAACGGTAG
TCAGTATGAT CTCAAAAATC ACAAGTATAT TCCTTTGTTA AACGCATATC AGGCTTATGG CAATACGATT TTCAAAGGAA
ATTTTGGCGT TCTTCAATCC AAGTGGCTCT TTATTATGTT TTACAACAAG CCTTTAGCAA ACATCTCGGT CCGTTTGGTA
GAGAGGAGAA AGTTAGAGTA CATGAGAATT GGAAAAATGT GAAGGAAATA GGTGAGAAAG AAAATACAAA ACAGTTGAAT
TTGATTTAAG AGAAACATAG AAGAAGAAAA AAGTAAAAGA TACTAAAATG TGACAAATGG AGGGGAAAAT TTAAG

>Vigan.01G215900.01
GTTTGACAAT CGACATGGAC ATCGTGGTTG TGTTGTGCAG CTGCAACAGT AGGTGTAGTA GTTAGCACCC TGTTTGGTTT
GGTTAATAGT TCAATTACCA TATTAATTAT TTCTCATCCA TCGCTGCTAA ATCTCTTTTG ATTCTTCTTC TCCACCTTCA
CTTCACGCCC ATAACCTAAT CTCTGCTAAC CCACTTTTCT CTGTCGCCAA ACACACCATC CATTCATCAT GTTCATCATG
ATTGGGGGAA ACCCCAGACC CCTTTTGCTC CTTTCGCTTC TGCTTTTGGT GTTCTTTTCT TCCTCAACCC AATCTCTTCG
ATTCGAACTC CAATCTGGCC ACACCAAATG CATATCCGAA GACATCAAGA GCAATTCCAT GACGGTCGGC AAGTACCTTA
TCGTCAATCA CAACGAGGGT CAACCTCTGC CCGATTCCCA CAGAGTCACC GTTCGGGTGA CTTCGTCGTA CGGGAACAAC
TATCACTACG GGGATCGCGT TCAGACGGGG CAGTTTGCGT TCGCGGCAGC GGAGGCTGGA GATTACATGT CTTGTTTTTG
GGCGATAGAT CACAATCCCC CGATAACGTT GACTGTGGAT TTTGATTGGA AAACCGGTGT AGCAGCCAAG GATTGGTCTA
ATGTTGCTAA AAAGGGGCAA ATTGATGTAA TGGAGCTAGA GCTAAGGAAG CTGCAAGATT CTGTTGCTTC CATTCATGAC
GAGATGTTTT ATCTTCGTGA AAGAGAAGAA GAAATGCAGG AACTGAACAG GGCAACCAAT AGCAGAATGT TCTGGCTGAG
TTTGCTTTCG CTCTTTGTCT GCTTATCAGT AGCAGGGATG CAACTATGGC ACCTGAAGAC ATTCTTCGAG AAAAAGAAAC
TCATTTGAAA TTTTGTGATA GTTTACATTT TTCCTATGTG ATCTTGTAAA ATATTCCAGC ATTAATTTAT CCAGAGGATA
CGCATAACGG TAGTCAGTAT GATCTCAAAA ATCACAAGTA TATTCCTTTG TTAAACGCAT ATCAGGCTTA TGGCAATACG
ATTTTCAAAG GAAATTTTGG CGTTCTTCAA TCCAAGTGGC TCTTTATTAT GTTTTACAAC AAGCCTTTAG CAAACATCTC
GGTCCGTTTG GTAGAGAGGA GAAAGTTAGA GTACATGAGA ATTGGAAAAA TGTGAAGGAA ATAGGTGAGA AAGAAAATAC
AAAACAGTTG AATTTGATTT AAGAGAAACA TAGAAGAAGA AAAAAGTAAA AGATACTAAA ATGTGACAAA TGGAGGGGAA
AATTTAAG

>Vigan.01G215900.01
ATGTTCATCA TGATTGGGGG AAACCCCAGA CCCCTTTTGC TCCTTTCGCT TCTGCTTTTG GTGTTCTTTT CTTCCTCAAC
CCAATCTCTT CGATTCGAAC TCCAATCTGG CCACACCAAA TGCATATCCG AAGACATCAA GAGCAATTCC ATGACGGTCG
GCAAGTACCT TATCGTCAAT CACAACGAGG GTCAACCTCT GCCCGATTCC CACAGAGTCA CCGTTCGGGT GACTTCGTCG
TACGGGAACA ACTATCACTA CGGGGATCGC GTTCAGACGG GGCAGTTTGC GTTCGCGGCA GCGGAGGCTG GAGATTACAT
GTCTTGTTTT TGGGCGATAG ATCACAATCC CCCGATAACG TTGACTGTGG ATTTTGATTG GAAAACCGGT GTAGCAGCCA
AGGATTGGTC TAATGTTGCT AAAAAGGGGC AAATTGATGT AATGGAGCTA GAGCTAAGGA AGCTGCAAGA TTCTGTTGCT
TCCATTCATG ACGAGATGTT TTATCTTCGT GAAAGAGAAG AAGAAATGCA GGAACTGAAC AGGGCAACCA ATAGCAGAAT
GTTCTGGCTG AGTTTGCTTT CGCTCTTTGT CTGCTTATCA GTAGCAGGGA TGCAACTATG GCACCTGAAG ACATTCTTCG
AGAAAAAGAA ACTCATTTGA 

>Vigan.01G215900.01
MFIMIGGNPR PLLLLSLLLL VFFSSSTQSL RFELQSGHTK CISEDIKSNS MTVGKYLIVN HNEGQPLPDS HRVTVRVTSS
YGNNYHYGDR VQTGQFAFAA AEAGDYMSCF WAIDHNPPIT LTVDFDWKTG VAAKDWSNVA KKGQIDVMEL ELRKLQDSVA
SIHDEMFYLR EREEEMQELN RATNSRMFWL SLLSLFVCLS VAGMQLWHLK TFFEKKKLI*