GBrowse Details

Vigan.01G212700.01

Basic Information:
Name: Vigan.01G212700.01
Multiple alignment
Variant Information
Position: Chr01:27757526..27761384 (+ strand)
Length: 3859
Functional Information:
Description: Similar to Uncharacterized protein. [I1M049, Glycine max]
GO: Biological Process: GTP catabolic process (GO:0006184)
Biological Process: intracellular protein transport (GO:0006886)
Biological Process: nucleocytoplasmic transport (GO:0006913)
Biological Process: signal transduction (GO:0007165)
Biological Process: small GTPase mediated signal transduction (GO:0007264)
Biological Process: protein transport (GO:0015031)
Cellular Component: intracellular (GO:0005622)
Cellular Component: membrane (GO:0016020)
Molecular Function: GTPase activity (GO:0003924)
Molecular Function: GTP binding (GO:0005525)
InterPro: Small GTPase superfamily (IPR001806)
Ran GTPase (IPR002041)
Small GTPase superfamily, Rho type (IPR003578)
Small GTPase superfamily, Rab type (IPR003579)
Small GTP-binding protein domain (IPR005225)
Small GTPase superfamily, Ras type (IPR020849)
Small GTPase superfamily, ARF type (IPR024156)
P-loop containing nucleoside triphosphate hydrolase (IPR027417)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:11.60,7.51,5.79,6.04,12.05,11.58,0.08,7.03
Automatic updates:
Name: NM_001248120 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max rab GTPase family 11 protein (LOC100527366), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001248268 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max Rab GTPase family 11-like protein (LOC100306448), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:27757526..27757871 (+ strand)
Length: 346
Type: five_prime_UTR
Position: Chr01:27757872..27758092 (+ strand)
Length: 221
Type: CDS
Position: Chr01:27760662..27761094 (+ strand)
Length: 433
Type: CDS
Position: Chr01:27761095..27761384 (+ strand)
Length: 290
Type: three_prime_UTR

>Vigan.01G212700.01 class=Sequence position=Chr01:27757526..27761384 (+ strand)
GAAAAAACCA ACCAAAGATG ATGAATGAGC TTCCTCTTCA GTTCTCAATA TTGTTTGGGA ATCAACACCA ATCAAATATG
GTTTGGTTAA GGCAAACTAC TAAATGTATT TTCGTTGCTA TTTACTTAAT TTTGGAGGCA TGGGTGTAAC CCATTGTACT
TTTTTTTATG GAACTAGTTG TAAATTTGTT AACATTACAA AAGTGAAGTC CGCTTTTGTA TCACCCTTCT TCCAAATCTG
GGTTTTTTCT TTTTAATTCA AATTCCAACA TTTTTTTCCT CCCTTTCACT TTTCTCCTTT CACTCTCTCC AAATCCATAC
ATACACAATA AAAGGAGGAA CAACAAATGG GGGCGTACAG AGCCGACGAC GATTACGATT ACTTGTTCAA GGTGGTTCTG
ATCGGCGACT CCGGCGTCGG CAAATCGAAC CTTCTTTCTC GATTCACGCG AAACGAATTC AGCCTCGAAT CCAAGTCTAC
CATTGGCGTT GAGTTCGCCA CCAGAAGCAT TCGCGTCGAT GACAAGGTTG TCAAGGCTCA GATTTGGGAC ACTGCTGGCC
AAGAAAGGTA TTACACAAAC GCTATTTCAT TCTCTTTCTC CCTCTCTTAA TTACTTTTAT CACTATCCTC TTTATTTATA
TGTGGGTGTG TGAGTCGATG CTTGTGATTT GATTTTTTTG CATTTTGGGC AGGAGGTATG AAAGTAGGAA TGTATGCTTT
ATGTGGTCTT TTGAGGTTTT ACGTTATTGT TTTTTTCATG CACTCTTTTT GTGTTGACGA CGTAATTAGA TTGAGGATGT
AGTGAAATTT GAAGCTTTTA TCATGCTTAG GTGGCTTTTG TAACGGAAGT CGTTGTAATG GATGTCTTAT GTTATTATTG
TGCGTGCGGC TTTTTCTTTC CAATGAAACG TAAAATCGTG GCATTTTGCT TTGAGCTTCT TGGTGAAATG AGCTGGATTG
TTTTATTTGT CAGTTGTTAC TTTCGGTGAG CTTTAAGGTT GAGTTTGATG TGCCAACATT ACGATGTTAT GGTTTTCATT
CTCGTAGCTT CTTTAAAAAG AAGATGGAGT TGCTGGTTAC TTTGTAAGAG ACATATTTTC TGAGTAATGA AAGAATTATG
AAGATAATAG TGTATTGTAT CCCACGATGG TTACCAATGT CTGGAGTTGT TAATGACAAG ATAGTGAGAA AGAAAGTTGA
TATGATATGT TTCTGACTAA TTGATTAGGG TTATGTGGGG AATTGGATGG TGGGCAGCTT TTGATGAACT TGAATTGGTT
TCTACTAATG AAACATGAAT TTGGTGGAAA GTGTTATAAC TCGGTATATC AGGTTGGTAA TTAAAGTCAG GTTCAATCTG
TTTTCGATTT ATATAGAACT GTTGTATATT ATGTTATGTT TAGCTAGCAC ATCAGTTGGT GCCAAATGTC AACATGAATC
GATTTTAGTT CATCTGAATG TGTCTATTTT TCTAAACTAT GTTGTGCATC CAGAAACCAT ACATAATTTC CAAATTGTTG
TGTTTGATTT TTTTTTTGTT TCAAAATGGA CAGAAGAGAA TATGTTCCCT TCTGTTCTTT GCGAAACAAA GTTGGAACTC
AGGCTTCTTT TGTAACTTCA TGATCTCAGT CTATCTTAGC TACCGGCTAT TTGTGGAACT TGCTATTCTT TGTTTGCGCC
TAAAGGAAAT TATATATATA ATAAATGTAT TTATAGGTTG AAGGCATGAG AAAGTGTGGG AAAGAAAATT AAAACGTGTG
ACATGTCACT GCTAAGATGT GAAGATTTTC TTCCCTGCCA TTTAAGATTA ATATGTTAAC ATGCTAATGT TATAGTTGTA
GCTGTTGGTT AGATACTGGT AATAGGGTGG GGAGTTGTAT TAACCAATGA ACGATGAAAG AAATTAAACC AACTGGACCA
GTACTATCAT GATGAAAGCT TGAATTATTT GGTAATATGA TGGCTGAAAA GAAAGTCAAT GCAGTAATTT TGTTAGCAAA
CTAGTTAGCG GGACAGTTAT AGTTGCAACA GAAGTAGCCA TTGAGCAGCT CCTCAAATTG GTTCCGTTCT AATGAAACAG
TAATTTGGTG GAAACTGTAG GCGGAACTTG ATGCCTGTTT GATTTTCTTC TCACTTTTTG GTTTTATAAG TTGTTTGAAA
TAATTTTACA TTACTCAACA ATCAATTTGT CATCCAAAAT CTATTAGGTT TGAAAGTTGT GTTCAAAATT AAGTGTTTTA
AAAACAGAAA CCGCAGAGGA ATGTTCTCGT GATGTCTCTT CTATTTTAAT TTTGTTTAAC CCCTCCATCA AATCCACACT
GTTATAGCTT GTGCCCCCTT CGTCACCTGT CTTAGCAAAT CTTGTTTTAA AACTGTAAGC AGTTTTGGAG TACAAAATTC
AAATCATATA GTAGTCAACC ACACACAATG ATGTTGCTGG CAAATATGTG GGCTTTGCAG CTACTCCTTT GTTTGTGTCA
TAGCTGGACC AGCTCTTCAA CCTGAGGCAA AAGGGTTGAG TGAAGAGGTG TGATGGCTGT GGGATAAAGA AGCTATTTTT
TTTTTCTTTC GGTTAGTGGA AGTGAGATCT GATGGAGAAA CTAGAAAGAT GCTATTTTTT TTGGGTGAGC TCTTTTCTAT
ACTGCTTCAG CACAATTGAG TTGAAAATCA CATGACACTC TGAGCCATTA CAGTTTTGTT TCTAACAAAC TGGTATGTTT
CTAAGGACAC TGATCCTAGT TGTCTAGTCC TGAAGTCAAA ATATAAGCAG AGAGATAAAC ATCATGCTTG AAAAAGGATA
ACTTAAAAGG AGTTTCTCAC AAAGTTTTAG ATGTGATGAA ATTGAAAGAT CTAAGGCTAG TCTTCCTTTC TGGGTGAACT
ATTTCGATTA TTCATCATCA TTTATCTTCC TAATTAGGCT GCACTACAAT CAATTGCCAG AATACTGTGC GTTTTTCTTT
ATGAAAACAT ATTTATGTGT AAGCAAGCTA GTAGTGTTTA TACTCATGTC GATTGGGAAA TCCTAACAAG AATCGTCTGT
AGTAGCATAA CCTAATTCTA GATCCCATGT AAATAATGAT CTATCGTTTA TTTTGTATTT TATTAACCAA TTTAGTTCTT
TTTCTGTATA CTGAAGGTAC CGAGCTATTA CAAGTGCATA TTATCGTGGA GCTGTTGGTG CTTTACTAGT CTATGATGTT
ACGCGTCATG TTACTTTTGA AAATGTGGAG AGATGGCTAA AAGAGCTGAG AGATCATACA GATGCCAACA TTGTGGTGAT
GCTTGTAGGG AACAAAGCAG ACCTGCGTCA TCTGCGAGCA GTTTCCACCG AAGATGCTAC AACTTTCGCC CAGCGAGAGA
GAACATTTTT TATGGAAACA TCTGCCCTCG AATCGTTGAA CGTTGGAAAT GCCTTCACAG AAGTGCTGAC TCAGATCTAT
CATGTTGTAA GCAAGAAGGC CCTTGAGATT GGAGACGATC CAGCAGCTTT ACCGAAAGGG CAGACAATTA GTGTTGGTTC
CCGTGATGAT GTATCAGCTG TGAAGCAAGG TGGATGTTGT TCTGCTTGAG TGTGTAGTAC AAGTCAGTCT CTGTATTTTT
ACTTTTAAAC ACATGCCTTG TTTATACCAT GTAGAGATTC ACCTCACAAC ATGAATATGA TTGTTTAAAG AGCATCGAAC
TTTAGTTTCT GCTTCGGTTT GTAGAGAATT ATGTTCAATA TTAGGCAGAT ATTTTTTAGG AAACATGCAC ATTCGTTTTG
GCAGCTTTCC CATTTTTGTG CATTTTAAGA TATTTAGTTA TTTAATGTCC AATTTATCAG TGTCGTCGTT CTTTTCTAAT
CTTATCACCT CTATTTGTC

>Vigan.01G212700.01
GAAAAAACCA ACCAAAGATG ATGAATGAGC TTCCTCTTCA GTTCTCAATA TTGTTTGGGA ATCAACACCA ATCAAATATG
GTTTGGTTAA GGCAAACTAC TAAATGTATT TTCGTTGCTA TTTACTTAAT TTTGGAGGCA TGGGTGTAAC CCATTGTACT
TTTTTTTATG GAACTAGTTG TAAATTTGTT AACATTACAA AAGTGAAGTC CGCTTTTGTA TCACCCTTCT TCCAAATCTG
GGTTTTTTCT TTTTAATTCA AATTCCAACA TTTTTTTCCT CCCTTTCACT TTTCTCCTTT CACTCTCTCC AAATCCATAC
ATACACAATA AAAGGAGGAA CAACAAATGG GGGCGTACAG AGCCGACGAC GATTACGATT ACTTGTTCAA GGTGGTTCTG
ATCGGCGACT CCGGCGTCGG CAAATCGAAC CTTCTTTCTC GATTCACGCG AAACGAATTC AGCCTCGAAT CCAAGTCTAC
CATTGGCGTT GAGTTCGCCA CCAGAAGCAT TCGCGTCGAT GACAAGGTTG TCAAGGCTCA GATTTGGGAC ACTGCTGGCC
AAGAAAGGTA CCGAGCTATT ACAAGTGCAT ATTATCGTGG AGCTGTTGGT GCTTTACTAG TCTATGATGT TACGCGTCAT
GTTACTTTTG AAAATGTGGA GAGATGGCTA AAAGAGCTGA GAGATCATAC AGATGCCAAC ATTGTGGTGA TGCTTGTAGG
GAACAAAGCA GACCTGCGTC ATCTGCGAGC AGTTTCCACC GAAGATGCTA CAACTTTCGC CCAGCGAGAG AGAACATTTT
TTATGGAAAC ATCTGCCCTC GAATCGTTGA ACGTTGGAAA TGCCTTCACA GAAGTGCTGA CTCAGATCTA TCATGTTGTA
AGCAAGAAGG CCCTTGAGAT TGGAGACGAT CCAGCAGCTT TACCGAAAGG GCAGACAATT AGTGTTGGTT CCCGTGATGA
TGTATCAGCT GTGAAGCAAG GTGGATGTTG TTCTGCTTGA GTGTGTAGTA CAAGTCAGTC TCTGTATTTT TACTTTTAAA
CACATGCCTT GTTTATACCA TGTAGAGATT CACCTCACAA CATGAATATG ATTGTTTAAA GAGCATCGAA CTTTAGTTTC
TGCTTCGGTT TGTAGAGAAT TATGTTCAAT ATTAGGCAGA TATTTTTTAG GAAACATGCA CATTCGTTTT GGCAGCTTTC
CCATTTTTGT GCATTTTAAG ATATTTAGTT ATTTAATGTC CAATTTATCA GTGTCGTCGT TCTTTTCTAA TCTTATCACC
TCTATTTGTC 

>Vigan.01G212700.01
ATGGGGGCGT ACAGAGCCGA CGACGATTAC GATTACTTGT TCAAGGTGGT TCTGATCGGC GACTCCGGCG TCGGCAAATC
GAACCTTCTT TCTCGATTCA CGCGAAACGA ATTCAGCCTC GAATCCAAGT CTACCATTGG CGTTGAGTTC GCCACCAGAA
GCATTCGCGT CGATGACAAG GTTGTCAAGG CTCAGATTTG GGACACTGCT GGCCAAGAAA GGTACCGAGC TATTACAAGT
GCATATTATC GTGGAGCTGT TGGTGCTTTA CTAGTCTATG ATGTTACGCG TCATGTTACT TTTGAAAATG TGGAGAGATG
GCTAAAAGAG CTGAGAGATC ATACAGATGC CAACATTGTG GTGATGCTTG TAGGGAACAA AGCAGACCTG CGTCATCTGC
GAGCAGTTTC CACCGAAGAT GCTACAACTT TCGCCCAGCG AGAGAGAACA TTTTTTATGG AAACATCTGC CCTCGAATCG
TTGAACGTTG GAAATGCCTT CACAGAAGTG CTGACTCAGA TCTATCATGT TGTAAGCAAG AAGGCCCTTG AGATTGGAGA
CGATCCAGCA GCTTTACCGA AAGGGCAGAC AATTAGTGTT GGTTCCCGTG ATGATGTATC AGCTGTGAAG CAAGGTGGAT
GTTGTTCTGC TTGA

>Vigan.01G212700.01
MGAYRADDDY DYLFKVVLIG DSGVGKSNLL SRFTRNEFSL ESKSTIGVEF ATRSIRVDDK VVKAQIWDTA GQERYRAITS
AYYRGAVGAL LVYDVTRHVT FENVERWLKE LRDHTDANIV VMLVGNKADL RHLRAVSTED ATTFAQRERT FFMETSALES
LNVGNAFTEV LTQIYHVVSK KALEIGDDPA ALPKGQTISV GSRDDVSAVK QGGCCSA*