GBrowse Details

Vigan.01G205500.01

Basic Information:
Name: Vigan.01G205500.01
Multiple alignment
Variant Information
Position: Chr01:26284923..26287709 (+ strand)
Length: 2787
Functional Information:
Description: Similar to Uncharacterized protein. [I1K3M8, Glycine max]
GO: Biological Process: transport (GO:0006810)
Cellular Component: intracellular (GO:0005622)
InterPro: Nuclear transport factor 2 (IPR002075)
Nuclear transport factor 2, eukaryote (IPR018222)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:152.33,99.35,111.86,109.53,216.67,267.47,162.09,128.92
Arabidopsis thaliana homolog: AT1G27970.2
Automatic updates:
Name: NM_001253343 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max nuclear transport factor 2-like (LOC100777334), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:26284923..26284970 (+ strand)
Length: 48
Type: five_prime_UTR
Position: Chr01:26284971..26285267 (+ strand)
Length: 297
Type: CDS
Position: Chr01:26287152..26287226 (+ strand)
Length: 75
Type: CDS
Position: Chr01:26287227..26287709 (+ strand)
Length: 483
Type: three_prime_UTR

>Vigan.01G205500.01 class=Sequence position=Chr01:26284923..26287709 (+ strand)
GGGTATATAA GGAGGGGGAA AGAAAGAGAG TGTGGGAGAG TGGGAGAGAT GGATCCAGAC AATTTGGCAA AGGCATTCGT
AGATCACTAC TACAGCACCT TCGACAACAA CCGCCCAAGC CTGGCCGGTC TCTACCAGGA TGCTTCCATG CTCACCTTTG
AAGGCCAGAA GATCCAGGGC GCTTCCAACA TCGTCGCCAA GCTCACTTCC CTCCCTTTTC AGCAGTGCCA CCACTCCATC
TCCACCGTCG ACTGCCAACC TTCCGGTGCC AGCGGCGGCA TGCTCGTCTT CGTCAGCGGC AGCCTCCAGC TCGCCGGCGA
ACAACACACT CTCAAATTCA GCCAGGTCAA CATTCTCTCT GTCTTAGGGT TCTCTTCACA CTCCGATCCA TCATCCATTT
CCGCTTCGAT CTGATTTCCT TTCATTTGAT TCTCTCTTTC TCTTTCTGCG TTGAATTGCT GTGGGGCGGC CTGTGTGATC
GCGTGTTGCT TTTGAATTTA CATGTTTGTA TTTCGTTGAA AATGATGGCT TGTTCCTCTG CGAAACATAA ATTGTTAAGT
GTGGGGACGT TTTAGGTTGT TATTAATGCT ATTGACTGCG GAATGTGTGA GGGTGAGAAG AGAGCGGGTG AATGGAGAAT
TAGGAAGGTT ATCGAATGAT AGTAATGGAT TTGAATCATT GCCAGTTTGT GTTTGGAAAT CTAGGTTAAC TGTAGAGTCT
AGGTTTTCTT TTTTGGTAAT CATAGTATTG GTACATGTTA TTCAACGGGG GGCCCTAGCG TACAGAATGT GGATACTTTT
CTCTTAATGT GGGTTTTTGT GCCAACCAAT GTTGGTCAAG GTGTGTTTAG AATTGAAAGT GGCAAAACAA TTATTAATCC
TTTTTGTATT TTCATTTTAA TTTTAATGGA CTTTATTGAT TAGATCAGAG TTCTTTTTTT GCGTGGTTAT GGATTGGACT
ACAGTACATC TGATGGATAT CCAAAGACAA CCTGATTCTA CTTATTATTT GTCTTGCCAT CAATCACATT GTTGACAACT
TAAAAGTTCC TTAAGGTCTC AATTTTCAGA TGTTCTGGAA ATGTGTCACG AGCTCAACCT TTTTCCGCAT GAGTTGTTCA
TGCCTTTTTC GTTGATATCA ATTTGCAAGA AAAATTACTG CACTTTTCAT CAGTGCTTGG GTAGGTTATC TAAAATTCCA
TTCTTCCAAA TTACAACTTA GATGGAATTT GAGTTCAATT TAAAAGCTTG TGGGGGTCCT CCAACTGTTT TATTTCATCA
ATTGCTGTCA GTTTGATTAC TTCCTATCAT TCTCACTAGG TTCCAATGGA ATCCACAAGA ATTATACTAG AGGCTTCAAA
TTAAATTAAA TTTCAATATC TATTAGTAGA ACTCGTTCAA TTCGGACCTC TCTGTAACTA GGTGGGATTA TGAGTGGGAT
ATTGTCTTGG TGCCGCATTA ACTTTCACTC TCTCTACCAG CATTGTCTCT GTAAGAAAAT AAAATCAATG ACCCTTAGCA
GAACAAACAA CTGGAAGTTG GCAGTTAGTC GCAGATGTTA AAGTTAATGA TGGAGTTTAT TTGGGAGTTA AGCATTGATC
ATTTCTAGTA GGTGACCTGC AAATTTGCAG CGGTCCTCTG TGTTGAGAAT TACTTCTCTC TTTAGATTTA ATTTAGCCAG
TATTTTTGTC ACTACTTAGC TGTCACTAAT ATGTTTTGTT CTACCTATCA ATAAATTTAA GGAGCTTATA ACTTTCTGAA
AAACAAAGAA GAACTGGAAA GTTTTCTGTT AAAATGATCA ATAGATGGGG GGTGGTTCTC CATCTTAAAT GAATCATGAA
TGAAGTGGTT TTTGTTAATG ATATTTTAGC GATCTTTGTA ATTTTAGAAA ATGATTATGT TTTGGTACCT TGGACTTAGA
AGTGTTTGTC TCTTGTTAGA GTAGCTGAAT TCATGATTCT GAAGGGGAAA ACGATGGGTT TTCAAACTCC TGTTTTTTCA
CTTAAATGTT GCCTATGTGT GGAAGGGGAA TTTTTCCTAA AGTTTTTACA TCCATAGCAA GTTTTTATTA TTCTTTTCTA
TACTTGTGCA CTTATCCTGG TAATTGTGTA TTATATTTTT CCTGTGTATG TAGAAATACT TTGTATTTTG GTAGGCATAT
CCTCTCGTTT TCTTGCTCTA CTGTTTATCT AATTTCAGTC AATCACTAAA TTTGTCATTC TCTTTTCAGA TGTTCCATTT
GATGCCAACT CCGCAGGCAA GCTATTATGT GTTGAATGAT ATATTCCGTT TGAACTATGC ATGAAGATAG ACCATCAAAT
ACATGAGCTG AAAGGCCATA GAAGAAGTTT GCCCTATAGC TAGCTGTTTC AGATTGGACA TTTGAAATTG AAAAAGGGTT
ATTTTTGGTT GGTTGTGTTG AATCCTTAAT TGTCTGCTGT GTTTAGAATT TTCTGTCGTG ACTGATTTGA AGAAAACCTT
CAAGGATAAA TTGTTGAAAG ATTACTGGGT ATTGGAGATT GAAAACTTTA ATATATTTGT GATCTGAGAT ATTGGATCCA
AGCATCTTGA TCCATTTTCC CTTTATTAAT TAGTTTATGC TTGCAGTTAT AACATAATGT TTTTGTTCAC CTAAGGAACC
AATGACGTTT GTTCAAGCAT CTCTCATACC ATGAGGGCTG TTTGTCTTTT CTCTTCTTAC CCGTAAAAGT TAATCAATTT
AGATGTTATT TGGGGTTGTT GATTTGTAAA TATATTAACT TCAATAGCAT AATAATTGAG GAGCAGG

>Vigan.01G205500.01
GGGTATATAA GGAGGGGGAA AGAAAGAGAG TGTGGGAGAG TGGGAGAGAT GGATCCAGAC AATTTGGCAA AGGCATTCGT
AGATCACTAC TACAGCACCT TCGACAACAA CCGCCCAAGC CTGGCCGGTC TCTACCAGGA TGCTTCCATG CTCACCTTTG
AAGGCCAGAA GATCCAGGGC GCTTCCAACA TCGTCGCCAA GCTCACTTCC CTCCCTTTTC AGCAGTGCCA CCACTCCATC
TCCACCGTCG ACTGCCAACC TTCCGGTGCC AGCGGCGGCA TGCTCGTCTT CGTCAGCGGC AGCCTCCAGC TCGCCGGCGA
ACAACACACT CTCAAATTCA GCCAGATGTT CCATTTGATG CCAACTCCGC AGGCAAGCTA TTATGTGTTG AATGATATAT
TCCGTTTGAA CTATGCATGA AGATAGACCA TCAAATACAT GAGCTGAAAG GCCATAGAAG AAGTTTGCCC TATAGCTAGC
TGTTTCAGAT TGGACATTTG AAATTGAAAA AGGGTTATTT TTGGTTGGTT GTGTTGAATC CTTAATTGTC TGCTGTGTTT
AGAATTTTCT GTCGTGACTG ATTTGAAGAA AACCTTCAAG GATAAATTGT TGAAAGATTA CTGGGTATTG GAGATTGAAA
ACTTTAATAT ATTTGTGATC TGAGATATTG GATCCAAGCA TCTTGATCCA TTTTCCCTTT ATTAATTAGT TTATGCTTGC
AGTTATAACA TAATGTTTTT GTTCACCTAA GGAACCAATG ACGTTTGTTC AAGCATCTCT CATACCATGA GGGCTGTTTG
TCTTTTCTCT TCTTACCCGT AAAAGTTAAT CAATTTAGAT GTTATTTGGG GTTGTTGATT TGTAAATATA TTAACTTCAA
TAGCATAATA ATTGAGGAGC AGG

>Vigan.01G205500.01
ATGGATCCAG ACAATTTGGC AAAGGCATTC GTAGATCACT ACTACAGCAC CTTCGACAAC AACCGCCCAA GCCTGGCCGG
TCTCTACCAG GATGCTTCCA TGCTCACCTT TGAAGGCCAG AAGATCCAGG GCGCTTCCAA CATCGTCGCC AAGCTCACTT
CCCTCCCTTT TCAGCAGTGC CACCACTCCA TCTCCACCGT CGACTGCCAA CCTTCCGGTG CCAGCGGCGG CATGCTCGTC
TTCGTCAGCG GCAGCCTCCA GCTCGCCGGC GAACAACACA CTCTCAAATT CAGCCAGATG TTCCATTTGA TGCCAACTCC
GCAGGCAAGC TATTATGTGT TGAATGATAT ATTCCGTTTG AACTATGCAT GA

>Vigan.01G205500.01
MDPDNLAKAF VDHYYSTFDN NRPSLAGLYQ DASMLTFEGQ KIQGASNIVA KLTSLPFQQC HHSISTVDCQ PSGASGGMLV
FVSGSLQLAG EQHTLKFSQM FHLMPTPQAS YYVLNDIFRL NYA*