GBrowse Details

Vigan.01G191200.01

Basic Information:
Name: Vigan.01G191200.01
Multiple alignment
Variant Information
Position: Chr01:23501779..23504107 (- strand)
Length: 2329
Functional Information:
Description: Similar to Geranylgeranyl pyrophosphate synthase. [U5U2L5, Phaseolus vulgaris]
GO: Biological Process: isoprenoid biosynthetic process (GO:0008299)
InterPro: Polyprenyl synthetase (IPR000092)
Terpenoid synthase (IPR008949)
Polyprenyl synthetase-related (IPR017446)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:16.62,8.91,33.31,48.53,11.32,28.09,18.94,9.49
Arabidopsis thaliana homolog: AT4G38460.1
Automatic updates:
Name: NM_001255830 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max geranylgeranyl pyrophosphate synthase-related protein, chloroplastic-like (LOC100788186), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:23501779..23502160 (- strand)
Length: 382
Type: three_prime_UTR
Position: Chr01:23502161..23502826 (- strand)
Length: 666
Type: CDS
Position: Chr01:23503321..23503683 (- strand)
Length: 363
Type: CDS
Position: Chr01:23503684..23504107 (- strand)
Length: 424
Type: five_prime_UTR

>Vigan.01G191200.01 class=Sequence position=Chr01:23501779..23504107 (- strand)
AATTTCTTCG TCCATTGCGC TCGGCCTGAT TCAATATCGG GTATTTTCTT CTTAGCTTTT GTTCGGAATT GATTTCTGTA
ATTTAGTTTG TTGTCTTAGA TGGGTGTTTG ACTATTTGGC TTAACATAGA AAGAAATGTT TGACCCGGAA GATGGTTGCT
TCTATAAGGT TTAAATTGCA AATTGTTGAT CGTAGGGACT TTGTTATTTG AGTTTGAGTT ATTTTTCAGG TCAATTGCTG
CGTTTGTTTG TTTTTGTCTG TAATTAGATG ATCCAGTGCT TTCTGTTATT TGTAAAAGTT TCTCGTTCAC CAATTGTTTG
ATGAAATGTA TAGCTTTGGT TTGTATGGAT ATTAAGGCTA CTAGGGATAA CATTGATAAC ATGTTTTGAT CGTTTCCTTA
ATCTTTTACT TATAGAGGTC AGGGATGGCT CCTTTCGCAA TTGCAACATT GGGAACTTCT CACACCTGCA TCATCCCAAA
GCCTGCGAAT TTGAAAGTTC CAATTCGCTG CTCCGCTGCT TCTCCTTCTC CTTCTTCGAT TTCCACTCGA TCAAAAGCCT
CTGACTTTGA TTTGAGGACA TATTGGGCTT CTCTAATGGT GCAGATCAAT CAGAAGCTCG ACGAAGCCAT TCCAGTTCAG
TTTCCTCCGC AGATATATGA AGCTATGCGG TATTCAGTCC TTGCCAAAGG TGTCAAGCGA GCCCCACCTG TTATGTGTAT
CTCTGCATGT GAACTCTTTG GGGGCAGCCG CCTTGCCGCC TTCCCTACTG CCTGCGCCCT TGAAATGGTA ATTAGTTTTT
TGCACCCAGT CAATCTTGCT TTGATTCTGT TGATTTATTT TTTATTTTTT AGTTATGATC TGAGGCATTT GAGTGAATTG
CCTTATCATT GTCAAGTTTT TATTTTCATT ATAGTACAGT TTTATCACTT ATTATACCAA TTTTATTGGT AGCATGGTTA
GTTTTAGGAG TGCCATGTTA TTCATGTAAA TAAGTGTTTT GGATTCCATC TTTTGCTAGC TGTATTTGCA TCACAGTACC
TGCCTTTAGA TGAACTGTTA ATTTAACAAT ACCTTTATTT GCAGTTTGCA ATTTTCTTGA ACAAAATAGA TTCTCTGAAT
CCGTATGTTT TGAACTCCTG ATGGATACAA AATGGAAATT ATGAAGTATT GGCATGTACT TCACTAAAAA GTAATGACAG
TAAACTGAAT GTGTTTTTGA GTATTTCTAA ACATACATGG TTTTAAGTTT ATTGTTAATC TTATATTTCT GTGGCAATCA
GGTTCATGCA GCTTCATTGA TACATGATGA TCTTCCCTGC ATGGATGACT CCCCGTCACG CCGTGGGAAA CCTTCAAATC
ATACCATCTA TGGTGTTGAC ATGGCAATTC TTGCTGGTGA TGCGCTTTTT CCCCTTGGAT TTCGTCACAT TGTTTCACAG
ACTCCGTCTG ACCTTGTGCC TGAGCACAAT CTTCTTCGTG TGATTGCCGA GATGGCTCGA TCTGTGGGCT CCACTGGTAT
GGCTGCAGGG CAGTTCCTGG ATCTTGAAGG AGGATCCAAT GCAGTTGAAT TTATACAAGA AAAAAAGTTT GGTGAAATGG
GAGAGTGTTC TGCAGTGTGT GGAGGATTGT TGGCTGGAGC TGAAGATAAT GAGATAGAGA GACTGAGGAG GTACGGGAGA
GCTGTTGGGC TATTGTATGC AGTTGTGGAT GATATTCTGG AAGATGGGTT GAAAGTTGAG GGAGGTGTTG ACGGGAAAAA
CAAGGGCAAG AGTTATGCAG AGGTTAATGG AGTAGAAAAG GCAATAGAAA AAGCTGAAGA GCTCAGAGAA AAGGCTAAGG
AAGAATTGGA TGGATTTGAG AAGTACGGGG AGCGAGTCTT TCCTCTCTAC AGTTTTGTGG ATTATGCATT TGATAGAAGC
TTCAATGCTG ATGATGCCAG TGGATAATGG GTTTTTGTTA TTTATATAGT TCTTTGATTG GTTGACTAAG TGAGAATCGA
TCATTGCATT GCATGACATG AGAACTTACA GGTTTTGAAC GCGGAACTCT CAAATCCATT CCATCAATCT CACCTTTTAA
ACTTTCCCGT CCATTTGTGG TCGATATCTT CTTGACTATT AAAAGGGATG AGGAAGTTGA GGCAAGGACC CAAAAGGAGG
GCATATCTAG TTTAGTATGT TTTCCTGTAG AACATTTGAT ACGGAGTTAG CATTCCAAGA CCCTAAGAAA CTAATATTAT
CATTTATTTT GTGACTTTTG TTAAATATGT TCAACGGATA CTAAATGTCT CTTTGATTAT CAAGTGAAAT GGAGTTTACA
GATTTGATA

>Vigan.01G191200.01
AATTTCTTCG TCCATTGCGC TCGGCCTGAT TCAATATCGG GTATTTTCTT CTTAGCTTTT GTTCGGAATT GATTTCTGTA
ATTTAGTTTG TTGTCTTAGA TGGGTGTTTG ACTATTTGGC TTAACATAGA AAGAAATGTT TGACCCGGAA GATGGTTGCT
TCTATAAGGT TTAAATTGCA AATTGTTGAT CGTAGGGACT TTGTTATTTG AGTTTGAGTT ATTTTTCAGG TCAATTGCTG
CGTTTGTTTG TTTTTGTCTG TAATTAGATG ATCCAGTGCT TTCTGTTATT TGTAAAAGTT TCTCGTTCAC CAATTGTTTG
ATGAAATGTA TAGCTTTGGT TTGTATGGAT ATTAAGGCTA CTAGGGATAA CATTGATAAC ATGTTTTGAT CGTTTCCTTA
ATCTTTTACT TATAGAGGTC AGGGATGGCT CCTTTCGCAA TTGCAACATT GGGAACTTCT CACACCTGCA TCATCCCAAA
GCCTGCGAAT TTGAAAGTTC CAATTCGCTG CTCCGCTGCT TCTCCTTCTC CTTCTTCGAT TTCCACTCGA TCAAAAGCCT
CTGACTTTGA TTTGAGGACA TATTGGGCTT CTCTAATGGT GCAGATCAAT CAGAAGCTCG ACGAAGCCAT TCCAGTTCAG
TTTCCTCCGC AGATATATGA AGCTATGCGG TATTCAGTCC TTGCCAAAGG TGTCAAGCGA GCCCCACCTG TTATGTGTAT
CTCTGCATGT GAACTCTTTG GGGGCAGCCG CCTTGCCGCC TTCCCTACTG CCTGCGCCCT TGAAATGGTT CATGCAGCTT
CATTGATACA TGATGATCTT CCCTGCATGG ATGACTCCCC GTCACGCCGT GGGAAACCTT CAAATCATAC CATCTATGGT
GTTGACATGG CAATTCTTGC TGGTGATGCG CTTTTTCCCC TTGGATTTCG TCACATTGTT TCACAGACTC CGTCTGACCT
TGTGCCTGAG CACAATCTTC TTCGTGTGAT TGCCGAGATG GCTCGATCTG TGGGCTCCAC TGGTATGGCT GCAGGGCAGT
TCCTGGATCT TGAAGGAGGA TCCAATGCAG TTGAATTTAT ACAAGAAAAA AAGTTTGGTG AAATGGGAGA GTGTTCTGCA
GTGTGTGGAG GATTGTTGGC TGGAGCTGAA GATAATGAGA TAGAGAGACT GAGGAGGTAC GGGAGAGCTG TTGGGCTATT
GTATGCAGTT GTGGATGATA TTCTGGAAGA TGGGTTGAAA GTTGAGGGAG GTGTTGACGG GAAAAACAAG GGCAAGAGTT
ATGCAGAGGT TAATGGAGTA GAAAAGGCAA TAGAAAAAGC TGAAGAGCTC AGAGAAAAGG CTAAGGAAGA ATTGGATGGA
TTTGAGAAGT ACGGGGAGCG AGTCTTTCCT CTCTACAGTT TTGTGGATTA TGCATTTGAT AGAAGCTTCA ATGCTGATGA
TGCCAGTGGA TAATGGGTTT TTGTTATTTA TATAGTTCTT TGATTGGTTG ACTAAGTGAG AATCGATCAT TGCATTGCAT
GACATGAGAA CTTACAGGTT TTGAACGCGG AACTCTCAAA TCCATTCCAT CAATCTCACC TTTTAAACTT TCCCGTCCAT
TTGTGGTCGA TATCTTCTTG ACTATTAAAA GGGATGAGGA AGTTGAGGCA AGGACCCAAA AGGAGGGCAT ATCTAGTTTA
GTATGTTTTC CTGTAGAACA TTTGATACGG AGTTAGCATT CCAAGACCCT AAGAAACTAA TATTATCATT TATTTTGTGA
CTTTTGTTAA ATATGTTCAA CGGATACTAA ATGTCTCTTT GATTATCAAG TGAAATGGAG TTTACAGATT TGATA

>Vigan.01G191200.01
ATGGCTCCTT TCGCAATTGC AACATTGGGA ACTTCTCACA CCTGCATCAT CCCAAAGCCT GCGAATTTGA AAGTTCCAAT
TCGCTGCTCC GCTGCTTCTC CTTCTCCTTC TTCGATTTCC ACTCGATCAA AAGCCTCTGA CTTTGATTTG AGGACATATT
GGGCTTCTCT AATGGTGCAG ATCAATCAGA AGCTCGACGA AGCCATTCCA GTTCAGTTTC CTCCGCAGAT ATATGAAGCT
ATGCGGTATT CAGTCCTTGC CAAAGGTGTC AAGCGAGCCC CACCTGTTAT GTGTATCTCT GCATGTGAAC TCTTTGGGGG
CAGCCGCCTT GCCGCCTTCC CTACTGCCTG CGCCCTTGAA ATGGTTCATG CAGCTTCATT GATACATGAT GATCTTCCCT
GCATGGATGA CTCCCCGTCA CGCCGTGGGA AACCTTCAAA TCATACCATC TATGGTGTTG ACATGGCAAT TCTTGCTGGT
GATGCGCTTT TTCCCCTTGG ATTTCGTCAC ATTGTTTCAC AGACTCCGTC TGACCTTGTG CCTGAGCACA ATCTTCTTCG
TGTGATTGCC GAGATGGCTC GATCTGTGGG CTCCACTGGT ATGGCTGCAG GGCAGTTCCT GGATCTTGAA GGAGGATCCA
ATGCAGTTGA ATTTATACAA GAAAAAAAGT TTGGTGAAAT GGGAGAGTGT TCTGCAGTGT GTGGAGGATT GTTGGCTGGA
GCTGAAGATA ATGAGATAGA GAGACTGAGG AGGTACGGGA GAGCTGTTGG GCTATTGTAT GCAGTTGTGG ATGATATTCT
GGAAGATGGG TTGAAAGTTG AGGGAGGTGT TGACGGGAAA AACAAGGGCA AGAGTTATGC AGAGGTTAAT GGAGTAGAAA
AGGCAATAGA AAAAGCTGAA GAGCTCAGAG AAAAGGCTAA GGAAGAATTG GATGGATTTG AGAAGTACGG GGAGCGAGTC
TTTCCTCTCT ACAGTTTTGT GGATTATGCA TTTGATAGAA GCTTCAATGC TGATGATGCC AGTGGATAA

>Vigan.01G191200.01
MAPFAIATLG TSHTCIIPKP ANLKVPIRCS AASPSPSSIS TRSKASDFDL RTYWASLMVQ INQKLDEAIP VQFPPQIYEA
MRYSVLAKGV KRAPPVMCIS ACELFGGSRL AAFPTACALE MVHAASLIHD DLPCMDDSPS RRGKPSNHTI YGVDMAILAG
DALFPLGFRH IVSQTPSDLV PEHNLLRVIA EMARSVGSTG MAAGQFLDLE GGSNAVEFIQ EKKFGEMGEC SAVCGGLLAG
AEDNEIERLR RYGRAVGLLY AVVDDILEDG LKVEGGVDGK NKGKSYAEVN GVEKAIEKAE ELREKAKEEL DGFEKYGERV
FPLYSFVDYA FDRSFNADDA SG*