GBrowse Details

Vigan.01G189300.01

Basic Information:
Name: Vigan.01G189300.01
Multiple alignment
Variant Information
Position: Chr01:23056074..23058931 (+ strand)
Length: 2858
Functional Information:
Description: Similar to Ribosomal protein S24/S35, mitochondrial. [XP_007021510.1, Theobroma cacao]
InterPro: Ribosomal protein S24/S35, mitochondrial, conserved domain (IPR019349)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:20.05,36.33,21.06,15.47,22.27,19.83,14.16,15.97
Arabidopsis thaliana homolog: AT3G18240.1
Structure :
Position: Chr01:23056074..23056127 (+ strand)
Length: 54
Type: five_prime_UTR
Position: Chr01:23056128..23056287 (+ strand)
Length: 160
Type: CDS
Position: Chr01:23056366..23056761 (+ strand)
Length: 396
Type: CDS
Position: Chr01:23057554..23057974 (+ strand)
Length: 421
Type: CDS
Position: Chr01:23058098..23058299 (+ strand)
Length: 202
Type: CDS
Position: Chr01:23058300..23058931 (+ strand)
Length: 632
Type: three_prime_UTR

>Vigan.01G189300.01 class=Sequence position=Chr01:23056074..23058931 (+ strand)
ATGTAAGGGG CAAGGGAGTA GAAACCCTAG AGTGAGAAAG AGAAACAGAG AACAATGAGA AGAACTGTTC TGAGAAATGC
AACTCTGTTC ACACGCAACC TTCTTAACTC AGCCCCTGCA CCCGCCGCTT CAACTCCTCT GCGACCAAAA CTTTTCTGCT
CCAATGGAAC TCCCCCGCCG GTTCCACAAA ACCCGGACGA CGTCGACAAC AAAGGTATGT ATCTCTCTCT ATGTTCTCAT
CAATTGTAGC ATTCTAACGG CGCCGTTTGA CACATTAGAT TTGTGTCGGC AGAGCTGAAG AGGCGGATTG ATATCTACAT
GAAGGGCGAC GAGGAGGTGC TGCCGTCGAT CATGGAGGCG ATTCTGCAGC GGAAGCTGTC GGGGAAGCAC GAGGAGACTG
ACGACGAGCT GATGGATGAG CTCCGCATGC GCCCCCTTGA CAATGTCGAA GACGGGGACT TCGAATCCGA TTTCGAGGAA
ATCCACGAAA CCGATGAGGA GCTCGACGAT TTGTACAACG CCAGGGATGC GGTGATGAAA AGGATGGTGA AGGACGAGTA
CTTCAACATG GATGATAAAA AATGGGACGA CATTGTTGAA GATGGGATCA AGCACGGTTT TCTTAAGGAC ACCAAGGAGT
GCGAGGAGAT TCTAGAGGAC ATGCTCAGCT GGGACAAACT CCTCCCTGGT CCGTACACCA TTCTCAATAT CATTGCACTT
ATTCTTTGTG ATTGTGAATA ATGCAGAGAC CTAAGTACAT ATATGCGCAG AGACAATTTA GAATTTTTAA CCATTGATAT
TTTAATAATT TGTCTGTTTT ATATTTAATC AATCTTTAAA TAGATTTATT GTTTATTTAT CTTTTTTGAA ATACTAAGCT
CTTTAACTAA ATTGATAAAA TAGCAATGAA ATAATATCTA ATGTAGTTCT TATGTGCTTA TTGTGGTGTT TTCCTACCAT
AATTGAATTA TTAATCCATA TAATGAAAGT TTGCATTAAA GGTTATCATA ATCTATCAAG GTGAACTCTA ATTTGGACAG
GAAAACTGGG CAAGAACACT TAAGCTAATT GTGCTTAAAT TTTATCGAAA TCAAAGTTGG GGGAATCTCC TCCTTTTATT
ACCTCAGTTG CTTGTTACTG TTATTTGACT GTTAGTGATA TACCCTTGTG TAGTGAATTA TAATTAAGGT TACAGAAGAA
TGTAAGGGAA TGCAATATGT AAGTATCTCT CGTCACGCTA TTACTTTGTT GTTGGCTAGT AAGTTCACTT TTAAAAGATT
TGTAGATTTC ACTAGAATGC TATTTATCTT GTTATGTTTT TGTGCTTGAC ATTTTTTGCA AGTTCCAGCA CAATTTTCAT
GACCGTGAAT TTATGTTTGC ATTTGAGATA TTTAATTTAA ACGTGTTAGT AAATAGTCAG GTTTAGAAGT GGTTAGTATG
CTTATTTATG CTGATTTTCT TTGGTTTAAT GTCATGATAG ATGATATAAA GCAGAAGGTG GAAATAAAAT TTAATGAGCT
AGGGGACATG TGTGAAAGAG GAGAACTTGA ACCTGAAGAA GCTTATGAAC AATTTAAGAA GTTTGAGGAT GAGATGGTAG
CGGAATACAT GAAGATAATG GAAAAAGAGG AGGTCCTGGT CCCACAGTTT GATGATACTG CTGTGCTGGA TAAGAAAAAG
GACTCAGACG ATCCACCAGG TGAAGGTCCA ATTTTGCGGT GGCAAACTAG GGTAGTCTTT GCTCCTGGTG GTGATGCTTG
GCACCCGAAA AACAGGAAAG TGAAACTTTC TGTTACTGTG AAGGAGCTAG GGCTTTCACA ATACCAATTT CGCCGTCTCA
GAGAATTGGT TGGAAAGCGT TATCATCCAG GGAGAGACGA GCTTACAATA ACTAGTGAGA GGTAGAGTCA TATCTTGTAA
AAATTCATTC ATCTATTATT TGATCTTGCA GACTTGGTTA TGGGTCTTAG TTCACTTGAA TCAGCCACAA TTGTGCTTAA
AGTTTTCTTT TCTGTATTTT TAAGGTATGA ACATCGAGAA GAAAACAGAA AAGACTGCTT AAGGACACTT CTCTCTCTCA
TTGAGGAGGC AGGAAAAGCT AATAAATTAG TAGATGATGC CCGGGTTTCA TATGTAAAGG AGAGGCTCCG TTCCAATCCA
GCATTCATGG AGAGGTTGCT TGCGAAGTGT ATGAGGTTGC GTGAATCTAA TCAGGTTACT GCTTGAAGCT TTCAGGTCTG
GTGTATGAAT TTTTGAACAT TCACCTGTCA TAATTTTGTA TTGCTCCCAG ATTTTAGTTT CTTTCATGAT TATTATCTTT
ATTTTTATAT ATTCGAGTCT TATCATGGTT TCCAGTTGCG GAAACAAGCT CGCTGCCTAG AGGAGGTTTC ACACTGATCT
TTCCTAGACC CATGGTAGGA GACTCATGCA CCGGGCTGAT ATCTGTCGTA TCTCTCGTAT TTAGTGCTTG AATAACGTAT
ACTATTTACT TCTATCAGAT ATTGTATGCT AGTGTTATGC TTTTGAGGAG TAACACTGAT CATGGATAAG GTTGGATGAC
CTCAAATTGA AGCTAGGATT GCTAACATTT TCTACCTTTA ACCACAGAAT AGAGAGAATA TTTATCTGTC AGTCATGAGA
CTGAATTATG TTTAATAAAG CATTGATGCT TGATAAGATA AAATTGCATT CTTCTTAAAC CTTATATAAT TTATGGACGC
TCTATTTTTA GTTTTCTTGA AAGGGTTTCT GCAATGTATT ATCCAACATT CCAGAAAACC CAGAATTTTA TGGAGGTGGA
AAGAGAAAAA GCTTAAAATG TCAAGTGAAA GACGAAATTC TAGGAGAAGG GATGGAGT

>Vigan.01G189300.01
ATGTAAGGGG CAAGGGAGTA GAAACCCTAG AGTGAGAAAG AGAAACAGAG AACAATGAGA AGAACTGTTC TGAGAAATGC
AACTCTGTTC ACACGCAACC TTCTTAACTC AGCCCCTGCA CCCGCCGCTT CAACTCCTCT GCGACCAAAA CTTTTCTGCT
CCAATGGAAC TCCCCCGCCG GTTCCACAAA ACCCGGACGA CGTCGACAAC AAAGAGCTGA AGAGGCGGAT TGATATCTAC
ATGAAGGGCG ACGAGGAGGT GCTGCCGTCG ATCATGGAGG CGATTCTGCA GCGGAAGCTG TCGGGGAAGC ACGAGGAGAC
TGACGACGAG CTGATGGATG AGCTCCGCAT GCGCCCCCTT GACAATGTCG AAGACGGGGA CTTCGAATCC GATTTCGAGG
AAATCCACGA AACCGATGAG GAGCTCGACG ATTTGTACAA CGCCAGGGAT GCGGTGATGA AAAGGATGGT GAAGGACGAG
TACTTCAACA TGGATGATAA AAAATGGGAC GACATTGTTG AAGATGGGAT CAAGCACGGT TTTCTTAAGG ACACCAAGGA
GTGCGAGGAG ATTCTAGAGG ACATGCTCAG CTGGGACAAA CTCCTCCCTG ATGATATAAA GCAGAAGGTG GAAATAAAAT
TTAATGAGCT AGGGGACATG TGTGAAAGAG GAGAACTTGA ACCTGAAGAA GCTTATGAAC AATTTAAGAA GTTTGAGGAT
GAGATGGTAG CGGAATACAT GAAGATAATG GAAAAAGAGG AGGTCCTGGT CCCACAGTTT GATGATACTG CTGTGCTGGA
TAAGAAAAAG GACTCAGACG ATCCACCAGG TGAAGGTCCA ATTTTGCGGT GGCAAACTAG GGTAGTCTTT GCTCCTGGTG
GTGATGCTTG GCACCCGAAA AACAGGAAAG TGAAACTTTC TGTTACTGTG AAGGAGCTAG GGCTTTCACA ATACCAATTT
CGCCGTCTCA GAGAATTGGT TGGAAAGCGT TATCATCCAG GGAGAGACGA GCTTACAATA ACTAGTGAGA GGTATGAACA
TCGAGAAGAA AACAGAAAAG ACTGCTTAAG GACACTTCTC TCTCTCATTG AGGAGGCAGG AAAAGCTAAT AAATTAGTAG
ATGATGCCCG GGTTTCATAT GTAAAGGAGA GGCTCCGTTC CAATCCAGCA TTCATGGAGA GGTTGCTTGC GAAGTGTATG
AGGTTGCGTG AATCTAATCA GGTTACTGCT TGAAGCTTTC AGGTCTGGTG TATGAATTTT TGAACATTCA CCTGTCATAA
TTTTGTATTG CTCCCAGATT TTAGTTTCTT TCATGATTAT TATCTTTATT TTTATATATT CGAGTCTTAT CATGGTTTCC
AGTTGCGGAA ACAAGCTCGC TGCCTAGAGG AGGTTTCACA CTGATCTTTC CTAGACCCAT GGTAGGAGAC TCATGCACCG
GGCTGATATC TGTCGTATCT CTCGTATTTA GTGCTTGAAT AACGTATACT ATTTACTTCT ATCAGATATT GTATGCTAGT
GTTATGCTTT TGAGGAGTAA CACTGATCAT GGATAAGGTT GGATGACCTC AAATTGAAGC TAGGATTGCT AACATTTTCT
ACCTTTAACC ACAGAATAGA GAGAATATTT ATCTGTCAGT CATGAGACTG AATTATGTTT AATAAAGCAT TGATGCTTGA
TAAGATAAAA TTGCATTCTT CTTAAACCTT ATATAATTTA TGGACGCTCT ATTTTTAGTT TTCTTGAAAG GGTTTCTGCA
ATGTATTATC CAACATTCCA GAAAACCCAG AATTTTATGG AGGTGGAAAG AGAAAAAGCT TAAAATGTCA AGTGAAAGAC
GAAATTCTAG GAGAAGGGAT GGAGT

>Vigan.01G189300.01
ATGAGAAGAA CTGTTCTGAG AAATGCAACT CTGTTCACAC GCAACCTTCT TAACTCAGCC CCTGCACCCG CCGCTTCAAC
TCCTCTGCGA CCAAAACTTT TCTGCTCCAA TGGAACTCCC CCGCCGGTTC CACAAAACCC GGACGACGTC GACAACAAAG
AGCTGAAGAG GCGGATTGAT ATCTACATGA AGGGCGACGA GGAGGTGCTG CCGTCGATCA TGGAGGCGAT TCTGCAGCGG
AAGCTGTCGG GGAAGCACGA GGAGACTGAC GACGAGCTGA TGGATGAGCT CCGCATGCGC CCCCTTGACA ATGTCGAAGA
CGGGGACTTC GAATCCGATT TCGAGGAAAT CCACGAAACC GATGAGGAGC TCGACGATTT GTACAACGCC AGGGATGCGG
TGATGAAAAG GATGGTGAAG GACGAGTACT TCAACATGGA TGATAAAAAA TGGGACGACA TTGTTGAAGA TGGGATCAAG
CACGGTTTTC TTAAGGACAC CAAGGAGTGC GAGGAGATTC TAGAGGACAT GCTCAGCTGG GACAAACTCC TCCCTGATGA
TATAAAGCAG AAGGTGGAAA TAAAATTTAA TGAGCTAGGG GACATGTGTG AAAGAGGAGA ACTTGAACCT GAAGAAGCTT
ATGAACAATT TAAGAAGTTT GAGGATGAGA TGGTAGCGGA ATACATGAAG ATAATGGAAA AAGAGGAGGT CCTGGTCCCA
CAGTTTGATG ATACTGCTGT GCTGGATAAG AAAAAGGACT CAGACGATCC ACCAGGTGAA GGTCCAATTT TGCGGTGGCA
AACTAGGGTA GTCTTTGCTC CTGGTGGTGA TGCTTGGCAC CCGAAAAACA GGAAAGTGAA ACTTTCTGTT ACTGTGAAGG
AGCTAGGGCT TTCACAATAC CAATTTCGCC GTCTCAGAGA ATTGGTTGGA AAGCGTTATC ATCCAGGGAG AGACGAGCTT
ACAATAACTA GTGAGAGGTA TGAACATCGA GAAGAAAACA GAAAAGACTG CTTAAGGACA CTTCTCTCTC TCATTGAGGA
GGCAGGAAAA GCTAATAAAT TAGTAGATGA TGCCCGGGTT TCATATGTAA AGGAGAGGCT CCGTTCCAAT CCAGCATTCA
TGGAGAGGTT GCTTGCGAAG TGTATGAGGT TGCGTGAATC TAATCAGGTT ACTGCTTGA

>Vigan.01G189300.01
MRRTVLRNAT LFTRNLLNSA PAPAASTPLR PKLFCSNGTP PPVPQNPDDV DNKELKRRID IYMKGDEEVL PSIMEAILQR
KLSGKHEETD DELMDELRMR PLDNVEDGDF ESDFEEIHET DEELDDLYNA RDAVMKRMVK DEYFNMDDKK WDDIVEDGIK
HGFLKDTKEC EEILEDMLSW DKLLPDDIKQ KVEIKFNELG DMCERGELEP EEAYEQFKKF EDEMVAEYMK IMEKEEVLVP
QFDDTAVLDK KKDSDDPPGE GPILRWQTRV VFAPGGDAWH PKNRKVKLSV TVKELGLSQY QFRRLRELVG KRYHPGRDEL
TITSERYEHR EENRKDCLRT LLSLIEEAGK ANKLVDDARV SYVKERLRSN PAFMERLLAK CMRLRESNQV TA*