GBrowse Details

Vigan.01G182100.01

Basic Information:
Name: Vigan.01G182100.01
Multiple alignment
Variant Information
Position: Chr01:21666036..21669215 (+ strand)
Length: 3180
Functional Information:
Description: Similar to Peptidyl-prolyl cis-trans isomerase. [V7CNA6, Phaseolus vulgaris]
GO: Biological Process: protein folding (GO:0006457)
InterPro: Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain (IPR001179)
Peptidyl-prolyl cis-trans isomerase, FKBP-type (IPR023566)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:6.85,7.24,12.59,64.22,4.21,10.61,3.27,9.49
Arabidopsis thaliana homolog: AT5G45680.1
Automatic updates:
Name: NM_001254116 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max FKBP-type peptidyl-prolyl cis-trans isomerase 3, chloroplastic-like (LOC100778390), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:21666036..21666073 (+ strand)
Length: 38
Type: five_prime_UTR
Position: Chr01:21666074..21666448 (+ strand)
Length: 375
Type: CDS
Position: Chr01:21667334..21667426 (+ strand)
Length: 93
Type: CDS
Position: Chr01:21667790..21667850 (+ strand)
Length: 61
Type: CDS
Position: Chr01:21667926..21667994 (+ strand)
Length: 69
Type: CDS
Position: Chr01:21668831..21668895 (+ strand)
Length: 65
Type: CDS
Position: Chr01:21668896..21669215 (+ strand)
Length: 320
Type: three_prime_UTR

>Vigan.01G182100.01 class=Sequence position=Chr01:21666036..21669215 (+ strand)
AACAATTTGA ACTAGAACCA TTCGTTTATC GGGTGGAGAT GGGTTTAGCG GCACCTTATT CCGTTGGAAC AAGCCTCCCT
TCCCTTCAAC GCCTTCCTTC CCCGAAACCC CAAATCTGTA ACAATTATTC ATCTCCTGTT AGTTCCCACC GTCATGTGAA
ATGTGCTTTC CAACTTCAAC CACAAACACC ACCACCGACA ACAACTGTAA CAGTGGCACC GGACGAGAGC CTCGTGAAGA
GAAGAACTGT CATAGGCCTT TTTGCATTTG ATGCTGTCCT TGCTTATTCT TCCTTAAATT CATCACCAGC AGCTGAAACT
CCATGTGAAT TTCAAGTGGC ACCTTCTGGT CTTGCCTTCT GTGATAAACT TGTGGGAGCA GGTCCTCAGG CAGTCAAGGG
ACAACTTATT AAGGTATTTT CATTTAGGTT TATTGGTCAT GGGATGGAAC TGTGCAAACT TTTAGATTGT CAATAAATTA
GAAAGTAAAA AACTTACTAT AGTTTGTTAT TAGATTACAC TATAAATTTT TTATTATGAT ATTATTAATG TATATCCTAT
TTACTCTTTT CATATGCTTT TAATAATATG TTATAGTTGG AGTAATTTAG AAATATGAAT TAAAATAGAG TAGGGAAGTC
ATGACTGCAA AACCTTCATT TTTGTGAAGT TGGATTGAGC TAAAATCTAT ATGTGAGTTG GATTGAACTA AAATCTATAT
GTGAGTTGGA TTGAACTAAA ATCTACTTTA GTTGAATTTA ATTAAAACCT ACTTTTAGGA TACTTCGAAA ACTATATAAT
AAAACTTATT GGAACTATTG TATTATTTAA TATCAATTGC AGTCAAACCA TTTGTAAATA AATTTTTTTT TTCTTTAGAT
GCTTAGTCTT CTATGTAGAA GAGTATATTG AAGATTAAAT CATATAGAGA TATAACTAAA ATAAAGTATA TAGGAGGTTA
TAAATCTCAT TTAAACTAAT GTTATGTTGT ATAAATTTTC TTAAGATGCA TATACACATA AAAAAACGAC TACTACTGTC
TCTTGTGGTA AGTGGATTTA ATAGTATACA TAAGACTATA TATTCTCACA TCTGAATAAA ACAATAGATG TAAGGCAGAC
AGATATATAT GTGATACATC CAACTTAATG CATTGAAGAT GGAATGTAAC AAAAAATGTG GTGTTAGTGA AGGTTCACAT
AGAGCCTGTG TTGAGCTTGG GATGTTTTGG TCATTTACTG ACATTATCCA CTTTGAGTAA AGTCCTATGT TCTGTTTGAC
CAATATGCTA TCTTCCAGGC GCATTATGTG GGGAGATTGG AGAATGGGAA AGTTTTTGAC AGCAGCTATA ATCGTGGCAA
GCCACTAACG TTTCGCGTTG GTGTTGGAGA GGTATGATTA TTAATGTTTT ACATTTTTTT CATACACTGT AACTATAGGC
AGTAATATAC AACACTGATG ACAACTAATT AAAAACTATG TGTGTTAGGA TTTTTGAAGT ATTTATAGTC GAAATCAACA
AATTTAACAT ATGATAGTTT GTGATAATTG ATAGTATGAA AATTTCTCTC TAGGATAGAT ATAACTGGAG AAATCAGAAG
TGAAATTGCT TCTTGAGAAT TGTTTGCTAA TGAAAACCAG AGTAGATTTC CATGTTTATT TAATGAGCGT CACCAATCAT
AAGTAGTCAA ACAATAGAGT ACCTTTTCTG TACAGTCTTG TTCGGGAATT AAAAGTTATC CATGAATCAA ATAGGTGATT
AAAGGTTGGG ATGAAGGCAT TATTGGAGGT GATGGAGTTC CTCCCATGCT TGCAGGTACT TTTTTCATCG GTGTCAATTC
ATTCTTTTAT GACATACCAA GGTAAAATTG TTTACTTTTT GGTAACATAG GAGGGAAACG TACCCTGAAG ATTCCTCCAG
AACTTGGATA TGGTTCAAGA GGAGCTGGTT GTCGAGGAGG CAAGTACTTC TTTCCTTTTG TTTTCTGCTG CTAAACAATA
CTTTTTCTTT TGACATTATA TTTGCCAGGA AAATGAAGAT GAAATTTTGT TTGCCTTTTG TTGTTTTTGT ACTGTGCGAA
TCTCGGTCTG TTAAAAATTA TGTTGGAGCT TTATCTTTAA TTGATTTTCA TCCATTGTGT TATCATGGAA AACTACTGGT
TACTTTAGTT TAGGATGTTC TTAGTTTTGA ATACCCAAGA GCTTAGTATG ATGATTGTGG CACTTGGCAA GTGACATAAC
AATGCAGAAT AAGAGAAGAG AATAGACTCA ATGCGTGCTA TATTCTCTGT TTTTTCTTTT TCTGTTAACT TCGCAGTGCA
GGAGAATTAA CAAGAAAAAT GCAAACTTAA TGTTATGGAA AGGATAATTG TCAGGAAGTT TTCTTAATAG TGGCTCTGCT
AACTCACATG AACTTGTTAA ATATATAATT TTCAAGAGTT ATTTCTCATT AAGAGAGAAA TTGAAACCAT TGAATTAAGT
TCTTAAAGAA AGATCATTTG GGAAAATACC ATGCCCAGAC ATCACTGTAG AAAGATGTAT ATAAAACAAT AGCGAAAACA
TATTTACAGC AAACAAATTC TGTAAAGAAG CAGGAACCAA GGAAAGCATG CCAAGCTGCT GTAGCCTGGA TCTAAACTAG
TGCTAGGGTT TAGCGGTTGA TCAGACTGGT GGTGATCTTC AGAATTATGC ATTGCTTTAT GCTCAAGGAC ACTTTTCACA
TATTCTTTTT GTGCATGGTT TTATTTTTTT AACATTTTTC TTGGACAAGA AAAACTTACA CATTGTTTGA TTCAGGTTCA
TGCATCATTC CTCCTGATTC AGTGCTATTG TTTGATGTGG AGTTCGTTAG CCAAGCATGA TTTACAAAGC CATGAGCGGG
AAAGTTTCCT TCTTTTCCTT TGGAGTTTAG AGCATAGATT ACATATAGTT GAAATTCTAA AATTAAATGT TAAAGTTGAA
CTTGCTGGAG AAATTCATAA CTAAGTCATT AACATGCTAT TTTATTGATT ATCCAGCCTT GATTTCATTA GCATAGAAAT
TGTACCCGAA AGTTGAACAG TTATGAGCAG TAATGGAAAA AACACTCCTC TGAAGTTCAA ACTAAGAGGG TGAATAACAC
AGAAGAAAAA TGGAAATAAC CAAATAAAGG AAACAATCAG TAAAAGGAAA GCTGTCAAAG 

>Vigan.01G182100.01
AACAATTTGA ACTAGAACCA TTCGTTTATC GGGTGGAGAT GGGTTTAGCG GCACCTTATT CCGTTGGAAC AAGCCTCCCT
TCCCTTCAAC GCCTTCCTTC CCCGAAACCC CAAATCTGTA ACAATTATTC ATCTCCTGTT AGTTCCCACC GTCATGTGAA
ATGTGCTTTC CAACTTCAAC CACAAACACC ACCACCGACA ACAACTGTAA CAGTGGCACC GGACGAGAGC CTCGTGAAGA
GAAGAACTGT CATAGGCCTT TTTGCATTTG ATGCTGTCCT TGCTTATTCT TCCTTAAATT CATCACCAGC AGCTGAAACT
CCATGTGAAT TTCAAGTGGC ACCTTCTGGT CTTGCCTTCT GTGATAAACT TGTGGGAGCA GGTCCTCAGG CAGTCAAGGG
ACAACTTATT AAGGCGCATT ATGTGGGGAG ATTGGAGAAT GGGAAAGTTT TTGACAGCAG CTATAATCGT GGCAAGCCAC
TAACGTTTCG CGTTGGTGTT GGAGAGGTGA TTAAAGGTTG GGATGAAGGC ATTATTGGAG GTGATGGAGT TCCTCCCATG
CTTGCAGGAG GGAAACGTAC CCTGAAGATT CCTCCAGAAC TTGGATATGG TTCAAGAGGA GCTGGTTGTC GAGGAGGTTC
ATGCATCATT CCTCCTGATT CAGTGCTATT GTTTGATGTG GAGTTCGTTA GCCAAGCATG ATTTACAAAG CCATGAGCGG
GAAAGTTTCC TTCTTTTCCT TTGGAGTTTA GAGCATAGAT TACATATAGT TGAAATTCTA AAATTAAATG TTAAAGTTGA
ACTTGCTGGA GAAATTCATA ACTAAGTCAT TAACATGCTA TTTTATTGAT TATCCAGCCT TGATTTCATT AGCATAGAAA
TTGTACCCGA AAGTTGAACA GTTATGAGCA GTAATGGAAA AAACACTCCT CTGAAGTTCA AACTAAGAGG GTGAATAACA
CAGAAGAAAA ATGGAAATAA CCAAATAAAG GAAACAATCA GTAAAAGGAA AGCTGTCAAA G

>Vigan.01G182100.01
ATGGGTTTAG CGGCACCTTA TTCCGTTGGA ACAAGCCTCC CTTCCCTTCA ACGCCTTCCT TCCCCGAAAC CCCAAATCTG
TAACAATTAT TCATCTCCTG TTAGTTCCCA CCGTCATGTG AAATGTGCTT TCCAACTTCA ACCACAAACA CCACCACCGA
CAACAACTGT AACAGTGGCA CCGGACGAGA GCCTCGTGAA GAGAAGAACT GTCATAGGCC TTTTTGCATT TGATGCTGTC
CTTGCTTATT CTTCCTTAAA TTCATCACCA GCAGCTGAAA CTCCATGTGA ATTTCAAGTG GCACCTTCTG GTCTTGCCTT
CTGTGATAAA CTTGTGGGAG CAGGTCCTCA GGCAGTCAAG GGACAACTTA TTAAGGCGCA TTATGTGGGG AGATTGGAGA
ATGGGAAAGT TTTTGACAGC AGCTATAATC GTGGCAAGCC ACTAACGTTT CGCGTTGGTG TTGGAGAGGT GATTAAAGGT
TGGGATGAAG GCATTATTGG AGGTGATGGA GTTCCTCCCA TGCTTGCAGG AGGGAAACGT ACCCTGAAGA TTCCTCCAGA
ACTTGGATAT GGTTCAAGAG GAGCTGGTTG TCGAGGAGGT TCATGCATCA TTCCTCCTGA TTCAGTGCTA TTGTTTGATG
TGGAGTTCGT TAGCCAAGCA TGA

>Vigan.01G182100.01
MGLAAPYSVG TSLPSLQRLP SPKPQICNNY SSPVSSHRHV KCAFQLQPQT PPPTTTVTVA PDESLVKRRT VIGLFAFDAV
LAYSSLNSSP AAETPCEFQV APSGLAFCDK LVGAGPQAVK GQLIKAHYVG RLENGKVFDS SYNRGKPLTF RVGVGEVIKG
WDEGIIGGDG VPPMLAGGKR TLKIPPELGY GSRGAGCRGG SCIIPPDSVL LFDVEFVSQA *