GBrowse Details

Vigan.01G179200.01

Basic Information:
Name: Vigan.01G179200.01
Multiple alignment
Variant Information
Position: Chr01:21262800..21267660 (+ strand)
Length: 4861
Functional Information:
Description: Similar to multiple RNA-binding domain-containing protein 1-like. [XP_004490616.1, Cicer arietinum]
GO: Molecular Function: nucleotide binding (GO:0000166)
Molecular Function: nucleic acid binding (GO:0003676)
InterPro: RNA recognition motif domain (IPR000504)
Nucleotide-binding, alpha-beta plait (IPR012677)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:50.46,19.31,17.98,25.14,30.42,16.26,12.54,12.34
Arabidopsis thaliana homolog: AT4G20030.1
Automatic updates:
Name: NM_001248757 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100305971 (LOC100305971), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:21262800..21262894 (+ strand)
Length: 95
Type: five_prime_UTR
Position: Chr01:21262895..21263030 (+ strand)
Length: 136
Type: CDS
Position: Chr01:21266604..21266672 (+ strand)
Length: 69
Type: CDS
Position: Chr01:21266785..21266891 (+ strand)
Length: 107
Type: CDS
Position: Chr01:21267278..21267412 (+ strand)
Length: 135
Type: CDS
Position: Chr01:21267413..21267660 (+ strand)
Length: 248
Type: three_prime_UTR

>Vigan.01G179200.01 class=Sequence position=Chr01:21262800..21267660 (+ strand)
AAATATACGA AATTTAAAAT TATGAAATCA AATTAGTTTA GAACAACCTC GTTCGCTGTG CTCATAAGAA TCAAAGGCCG
TATTTGGTTT TGGTGATGGA GATGAGTATG TTGGCTCCTT CCTTCCCTGG CTTCGCTAAA CCCTCTGCAA CTGTAAAACC
TTCTCTTCTT ACGCTCAGGG CATCTTCTCT GCGCCATGAC TACCCTCTTG CGAGCAAAAT TGTTGTTAAG AGTAATATTC
GTTCTCACCC TCTTACCCTT CAATTTCATT TAGTTGAAGC GTTTATTTGT GTGTTTGATT CATGCCCATC TCATTTCCAA
TTGTTCTTGT GTTGTTTGAG CCTTATGGAT ACACACTCAA TTTAGAATTA GCTCCTTTTT ATACCCTTTT CCTTACAAAG
CAGCAATTTT TACGCCACCC AATTTGGTGA TGTGGGTAGT TCTAAGGAGA AAATATAAGG ACATTTGTTT ATTTATTGCA
CTTGAAAGCC TTGTCATATA TGATGCTTAT TTTACTTATG GTGTGGCACC GAGATTAGAT GTCATTTTAA CTGTTATCTA
CCATTGCCAG CTCTAGGTAG TTTATGCTAC AAAAAAGTGT AGGCAGGTGA ATGTTAGTTC CTTGGTGGGA TATGTAAGGT
TAAGGGTATG AGAAAAATTA AGTGCTGAGT AAAACACCAT TCTGGCCTCT GAAGATTTTG GGTTGGTTGG TTAGTCCAAA
GAGATGAAAA TTATCCTTTC CATTCATGGA AGATGATTTT TACAAGGCTT TTAATATGGC CAATAAAGTT AAATGATAGC
TAATGTTGTT GAATAAACTT AAATGAGGGT TAAGGTTATT GAATAAACTT AAATGAGAGT TAATCTCTTA GCAGTTTTAG
AATGGATAGG TGGAAAGCCA TTCCAATGTG TACATACGTT CACAATTTTA TTTTTTGTTT AATGAATGAA AAGTGAATCA
GAATATTTAC ACAAAAGAAA AACTTGTCAT CAAATTGACA TTGGCATTAG AGCTTGAGAG CTTAAGTGTT TGTTGATGAG
TCTGTCTTTT AAAAGATAAC AATTGCTAAA ATTCAAAAGA AGTGTGGGAT ATTTTGGAAA AAGTGTACAA GGGAGATGAG
CGAGGAAACA AGTCCAATTT CAAACACTTC GGGACGAGTT CGAGAGCTTG AGGTTGAAGG AGACAAAAGA AGTTTTCGAG
TTTATCATCG GTTCATGGTG AACCAATTTA GCTGAAATAG CAAGATGTTG TCCACCAGCT GAGCTCTGGA GAAGATCTTG
AGGTTGCTGA GAATGTCATA TGAGCAATAG AATGGTAGAA GAGCTTGTGA GTTCTCTTGA ACCATCGTCG CCCTTAACAT
TGTCAGAGTT CCAATTTCGA CCAGCTACCA TACAGTTTTG ATTCTCTCGG CAAAGCGACT ATCATGTCGT CAACGACGCC
TTAATCAAAG CTCTCATGCG TCCTCACACG CCTCTCAAAG TTTTGGATTT GCGCCCTTTA TCCACCCCAC GTGGTAGCGT
GTCCTGTCTC CTCTCCGATA GTGATCCAAT GTGTCAAGGT CGCCTCTTTC TTCTCTTTCA TGATCTATGA TTGGTGCTTT
GATTGGAGAA CCTTGGATTT TTAGTTGTTC AACAATTTGG TATGACTCGG TGTGATGTAA ATCATTTAGT CTTTTATCAT
CACTCGAGTG GGGGATGTGT CTACTTGATA GTATATGTTG ATGACATCAT TAGTGACAAT CATGGCATCT CTAAGATGAA
ACAACATCTT TGTGACCATT TTCAAACCAA AGATCTTGAC AAACTCAAAT ATTTCTTAGG TATTGAGGTG ACACAATCCA
ACGATGGTAT CCTTATATCT CAAAGGAAGT ATGCATTGGA TATTTTGGAG GAAACTAGAT AGATGAATTC AAAATTTTTT
GATGCACCCA TGGATCTTAA TACTAAACTT CTACCAAATC AGGGAGAGTT TATGTCAGAT TCCAAGCAGT ATAGAAGACT
AGTTGGAAAA TAAAATTATC TTACAGTTAC TCGTCCTGAC ATTTCCTTTG CTGTTAGTGT GGTAAGCCAA TTTCTTAATT
CTCCATGTGA AAATCATTGG AATGGAGTTA TCTGTATATT AAATTACATT AAAGGAGCTC TTGGAAAAAT GGTTGTTATA
TGGTTCCAAT AACCATGAGT TGTTTGTTAT TCATATGCTG GTTGGACAAG ATCTCTTTCT AATAGAAGGT AACTTAATCT
CTTGGGAAAG CAAGAAACAA AGTGTTGTGG CAAGATCTAG TATAAAAGTA GAATATAGAA CTATGACCTG AGCCACTTGT
GAGCTTGTTT GGCTTAAGCT TAGAGAGTTA CAATTTGGAT ATGTCACTTA AATGACACTT ATATGTGACA ATGAGGCTAC
TCTTCATATT TGTTCTAATC TTGTCTTTCA TGAGAGAACC AAACACATTT TAGTTAGCAA ATATTTTCAC AAGGTCTTTG
CGAGGACTGA AAATTGATTA TATTTGTAAG AAGCTCGGTA TATATGATTA TATTTAATAA TTTGCATAGT TTTATTTGAT
TTTTTGACAG TAAATCAAAC AGAATTATCA AAGAATACTA GTTATGGTGT GCCACATCTG AGTTATTGTC AATATCTTAG
GTATCAGGCT TTTATTAGGC AATGTTCTTT GTCCTACTTG GTTTCAGACA TTCAGTATGA GCCTTTTGGG CCTTGTGCTC
CATTTTGGCA ACTGGGGTTA CTGTCTATGT TTGGGATTTA TAACAGGGAC TAAGTCCAGG GTACTGGAGA TCGTTTTCAG
CTCTGACTAT ATTTTCTTTC TACCTTTTTC TACATTTCAT GCTTTCTCAG TGTTTCTGTG CTCTATGCTG GAAAATTTAT
TTTCTTCAAA ATTTTATTTG AACATCTTTG GGGTAGACAA ATGACAGTAC ATTGACCCAT AAGAGTGATA CCAGGGACCT
TAGTAGATTG AAAGACTACA TCAGATATTA AAGGGGACAT ATCAGGATGT TGATGTCATT GCCTTATTAT ATTTCTTTAT
ATTTTATTCC ATTATTGTGC AGATAGGCAA TGATTGGCTC AGTGTATTGC TCTAAGTTGT AAAGTTTATG AATAAAAAAG
GAGGGGATGA TGAATTGTTA GCCATAGTTG GTGTAGAGGT AGTACCTTAT GAACATACTT TTCTAGACTC TATATATAGT
TGTGACGGTT TCTTTGTTTA GGAGGATTGT TGATCTTTCG TCCTTGTTAC AGTGACTAGT AAAAATGTTC TTATACAGTA
ATAACAGAAT CACTTTTGCC AATTATCTAC CTGATAAATA GAAGTACAAA GGTGTCTGTT ACGAAATCAT CTGGTTAACA
ACACTGCTCT TTTGTTAATT TGATATCTAG CAAGTTAATG TATCTGCCGT GCAGACTAGT GTCTAATCTA ATTAGACAAT
ATTTGACTTA GCTTTAGCTA CTATATTATC ATTACTGGTT TTGACTTCTA ATCATAAAAG TTCCAGTAAC ATATGAGAAG
CATTTAGCTT CAAAGCACTA AGCATCTATC ATATCTATCC GCTTAGTTTC CATCTACGGT GTCTTTTACT GATATAGTTC
TGATTATTGT TGTTTGGTGG AGATTTTCTT TACTTTGTGC AGTTCTTAAT TTTCATCAGT GATCAATCTG CATGACTGTG
TGCCCTTTTT TTATTTTTGA CTTATGTTGT CTCCATGCCA TGGAGGCAGA TTTATATTAA TTTCAGATAT TGCATCTTAC
CTACTTTTTT ACATCAATTT CTACTTGTTT TTATCTGGAA GCAGATTTAC CCTATTCTAC TGGTGAGATT ACTTTGCAAA
AGGAATTTTC TAATTTTGGA AAGATAGCTG AAGGTAAATG CCCAAGTTTT CTCATTGTTC ACAATGGTGT GAGTCTTGGG
ATGGTTTACA TCATGACTTT TACTACTCTA ACTCACCTCT TGGGTCATGC ATTTTATGTG TGCAGTTAAA ATGGTTAAAG
ATATGAAAAC GAAAAGATCC AAGGGTATTG CTTTCATTCA ATATACATGC CAAGATGATG CCATGCTTGC ACTAGAAACC
ATGGATCAGA AGGTTCAAAT TTTCATGCCT CATCCTTCTT CTGCCAGCCA TGACATTGGC AATGATTTTT TCACCCAAAT
AGTACGCTTG GATTTAAAAT TTACCCAGAT AACATACTGT GTCACAGATA GCATTGAATT TTGAAATGGG TTATGTTTTC
AATTTTTTTT TAAAAATATC TTTACCCTTT TCTTTAAATG AAAAAGGAAA AAGAAAATAA AAATTTGTTT CTGAAAACTG
AATTCTGATA TGAAAAAGAA AAAACCCTGC TATCTGTGTA TATATTTGGC ACAACATGCT ATCTAGGTAA TTTTTAGTCC
GTATTTGGTA TTTGGATGAT AAAATCCATT GGCAATTGAG TGTTCCCTTT TGATGTGTTT ATTGTCCATT TTCTACAGGA
TTTTTATGGT CGAACAATCT ATGTGGAAAT TGCTAGATTG GGTTGGGATT GTTTTGGTGC AACCCCAAGG GCCTCAGGAC
CCCCAAAGAA GTGGAATTTG CCAGAGCAAG AAGTGGTAGA TTGTTGGTAC TGATCAAAAT TCATAATTGA GGGAAGCTGT
AGAACAGAAA ATGATGAAGT AACAAATATC AATTTATAAA AATATGGCTA TACAAGTTAG GGTTTGATGG AACATGTTTT
TGTAATAATA TTGATGCAAT ACTGTACTTG ATGTAATCTT TCATGCACTC TTGATTTTGG CACAATAAAA TTAACTTGAT
CTATCTGTAG GGCTCCAACA GTTATAAATT TTATTACAAA GATTTAGGTG ATTTTCATTC A

>Vigan.01G179200.01
AAATATACGA AATTTAAAAT TATGAAATCA AATTAGTTTA GAACAACCTC GTTCGCTGTG CTCATAAGAA TCAAAGGCCG
TATTTGGTTT TGGTGATGGA GATGAGTATG TTGGCTCCTT CCTTCCCTGG CTTCGCTAAA CCCTCTGCAA CTGTAAAACC
TTCTCTTCTT ACGCTCAGGG CATCTTCTCT GCGCCATGAC TACCCTCTTG CGAGCAAAAT TGTTGTTAAG AATTTACCCT
ATTCTACTGG TGAGATTACT TTGCAAAAGG AATTTTCTAA TTTTGGAAAG ATAGCTGAAG TTAAAATGGT TAAAGATATG
AAAACGAAAA GATCCAAGGG TATTGCTTTC ATTCAATATA CATGCCAAGA TGATGCCATG CTTGCACTAG AAACCATGGA
TCAGAAGGAT TTTTATGGTC GAACAATCTA TGTGGAAATT GCTAGATTGG GTTGGGATTG TTTTGGTGCA ACCCCAAGGG
CCTCAGGACC CCCAAAGAAG TGGAATTTGC CAGAGCAAGA AGTGGTAGAT TGTTGGTACT GATCAAAATT CATAATTGAG
GGAAGCTGTA GAACAGAAAA TGATGAAGTA ACAAATATCA ATTTATAAAA ATATGGCTAT ACAAGTTAGG GTTTGATGGA
ACATGTTTTT GTAATAATAT TGATGCAATA CTGTACTTGA TGTAATCTTT CATGCACTCT TGATTTTGGC ACAATAAAAT
TAACTTGATC TATCTGTAGG GCTCCAACAG TTATAAATTT TATTACAAAG ATTTAGGTGA TTTTCATTCA 

>Vigan.01G179200.01
ATGGAGATGA GTATGTTGGC TCCTTCCTTC CCTGGCTTCG CTAAACCCTC TGCAACTGTA AAACCTTCTC TTCTTACGCT
CAGGGCATCT TCTCTGCGCC ATGACTACCC TCTTGCGAGC AAAATTGTTG TTAAGAATTT ACCCTATTCT ACTGGTGAGA
TTACTTTGCA AAAGGAATTT TCTAATTTTG GAAAGATAGC TGAAGTTAAA ATGGTTAAAG ATATGAAAAC GAAAAGATCC
AAGGGTATTG CTTTCATTCA ATATACATGC CAAGATGATG CCATGCTTGC ACTAGAAACC ATGGATCAGA AGGATTTTTA
TGGTCGAACA ATCTATGTGG AAATTGCTAG ATTGGGTTGG GATTGTTTTG GTGCAACCCC AAGGGCCTCA GGACCCCCAA
AGAAGTGGAA TTTGCCAGAG CAAGAAGTGG TAGATTGTTG GTACTGA

>Vigan.01G179200.01
MEMSMLAPSF PGFAKPSATV KPSLLTLRAS SLRHDYPLAS KIVVKNLPYS TGEITLQKEF SNFGKIAEVK MVKDMKTKRS
KGIAFIQYTC QDDAMLALET MDQKDFYGRT IYVEIARLGW DCFGATPRAS GPPKKWNLPE QEVVDCWY*