GBrowse Details

Vigan.01G175000.01

Basic Information:
Name: Vigan.01G175000.01
Multiple alignment
Variant Information
Position: Chr01:20292672..20295972 (+ strand)
Length: 3301
Functional Information:
Description: Similar to NAD(P)-binding Rossmann-fold superfamily protein. [XP_007025110.1, Theobroma cacao]
InterPro: NAD(P)-binding domain (IPR016040)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:17.09,14.70,11.75,39.00,5.35,16.13,4.25,15.16
Arabidopsis thaliana homolog: AT2G34460.1
Automatic updates:
Name: NM_001252923 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100812074 (LOC100812074), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:20292672..20292748 (+ strand)
Length: 77
Type: five_prime_UTR
Position: Chr01:20292749..20292865 (+ strand)
Length: 117
Type: CDS
Position: Chr01:20292994..20293194 (+ strand)
Length: 201
Type: CDS
Position: Chr01:20293462..20293581 (+ strand)
Length: 120
Type: CDS
Position: Chr01:20294286..20294558 (+ strand)
Length: 273
Type: CDS
Position: Chr01:20294661..20294825 (+ strand)
Length: 165
Type: CDS
Position: Chr01:20294826..20295972 (+ strand)
Length: 1147
Type: three_prime_UTR

>Vigan.01G175000.01 class=Sequence position=Chr01:20292672..20295972 (+ strand)
CACGTGGCGA GGTTATAGCG TCTCGTTTGG CAGTGTGGAA ATTAGAAGAA ATCTGTGTTT TTTACAGTGT TAGAATCATG
CCAATGGCTT CGACTCTCAC AATTGTAAGA AATCCCATTT TCCTTACTCA CCATTACCAA TTCAACAAGC AGTTCACAAC
ACCTTCTTCC TTACGCCTCC TCAGTTTCGC AAAGGTAGCA ACACATCACA TTTGACAACA TATTGTATTG TTTTTTTCAG
CATCATGTGC ATGTCGCAAG CGTAGCGTGT GTTGTTGTAT CAGGACACCC TTTTGCTTAC TTCTTGTTGG ATTGCGTGTT
AGATGGAAGG AAGTGAGATT AGTGAGGAAG TGGGGGAGGA TTCGAGAGCG AAGAGGAAAA TTTTTGTTGC TGGAGCCACT
GGTAGCACTG GGAAAAGAAT CGTTGAGCAG TTATTGGCAA AGGGTTTTTC TGTTAAGGCT GGGGTTAGGG ATTTGGACAA
GGCCAAGTCC ACCCTTTCCT CTGCCAACCC ATCTCTTCAA ATTGTAAGCT TTTCCTCTAT CTTATTGCTA CATTAAGCCA
ATCTAGTCCC ACTTTTTTGG TGTAGAGAAA TGCTAGGAAC ACTCTATTCT AGTCACACGT TTTGATTGGT TGAAATTTAT
TGGAAATAAA AAAATTTGAT GGATCTCACA ATTTATTTAA CTACCAACTT TCTTGATTTT GTAGTTTTCA ATAAATTTTG
ACCAATCAGA AAGATTTTAT TAGAATGGCA TTTCCTTTTA AGTGTATGTG AGTATGTGTA TGTGATGCAG ATAAAAGCTG
ATGTCACAGA GGGGTCTGAT AAGCTAGCTG AAGCCATTGG TGATGATTCA GAAGCAGTGG TATGTGCCAC GGGCTTTCGG
CCGGGCTGGG ATTTGCTTGC TCCGTGGAAG GTTTGTCAAA TTTTTTTTGA TGTATTGTAG TATACTAGAT GTTTACATGT
ACAATTATAA CCTTTTTGTT TAGTTAGTAC GACTCACTTT TTCATATCAG TCCTTAGTTT GGTTAGAAGA AATATAGGTT
GCAGTAATTC AGGTTGACTG TTGTGCTCAA CATATTCAGT GATCCAGAAT CTACCATGGT AGAAGTCATT TAAATGCTTT
TGAAAGTAGG ACAGTTTGTG TATGTTTTTG TAGAGTGTGT CATCTTTTAC TTAAAACTTT AAGCAGTTAA TTCCCCTGCC
TTTTGGATAT GAAACTTTGG AAGTAATCTA ACCTGGATCT TTGTTTCTTC CATGTCTTTA TTCTGCCCTT TGGTTCATGT
TGTAACTCTT GTTTAGTAAC TGACCTCATT AAGGATGTTA GTAGGAATGG ATGATGTTGA TGGAGAGCTA TTAGAATCTT
TTTCATCTGC TTAAATTTTC AAACTTCTGT GTTGCCATGT GCTTTCATTT GTGGAATTTT TAAGACTTTC ACCTGGGAAG
GGATAGCATG GTTATATCCC TAATTTGAAA TGTTATTCGT TTTCCAAAGA AGACATCGGA AACTAATTAC ATTATGAAGA
AAATCACTAA TAATGCAAAA CATTATTGCA GGGTGAGTGG ATTATTCAGT CTCTTGGTAT CATTCAGTGT CATAATAAAT
TTTTATTCGT GCAGGTTGAC AATTTTGGTA CTGTAAACCT TGTTGAAGCA TGCAGGAAAC GTAATGTCAA GAGATTCATT
CTTATCAGTT CCATCTTAGT TAATGGAGCA TCTATGGGAC AGCTACTCAA TCCGGCTTAC ATCTTTCTTA ATGTTTTTGG
ACTCACCTTA GTAGCAAAAC TACAGGCAGA GAATTATATC AGGAAATCTG GCATAAACTA CACAATTATA AGACCGGGCG
GGTTGAGAAA TGATCCTCCA ACTGGAAATG TTGTTATGGA GCCAGAGGTT GCTGCTACAT TTCTGACTTT CTGTTACATT
TCCTCAATAG AATCTTAAGT TCATATTTTC TGGAGCGATG CTGAATTATT TAAAATCCAT GTGTACCAGG ACACCCTTTA
TGAAGGTTCC ATATCCAGAG ATCAAGTTGC GGAAGTAGCT GTGGAGGCAT TGGCTTATCC TGAGGCATCT TACAAAGTCG
TGGAAATTGT GTCTCGCCCA GATGCTGCTA AGCGTTCATA CCATGACCTT TTTGGTTCCA TAAGGCAGCG ATGATTCCCG
ACTTTATGAT TTGCTTGCAG ATTAATGAAT TTGTTTCTCT GTTATTTTAC TTTGTGGTGG CCAATGTGTA TCTTAACTGT
GTTCCATTTG TGTTACTTCA TTCAATTGGT ATGCTAGAGT AATATTGTAA ATATTTCAGT GCATCTTTTA TTTGTTCATC
TCCCACTCTC CCCCATTAAC GGTGAGTTGA TAATGCACCG TGAGCACTAT AGAACATAAT ACTTAATTTA ATTAATACAA
GTTTGGAGCA TGCACTTAAT AAGCTCTTAC AAAACACGAG TCACAGTTAC TAATAAGCTT AACTGAAAGC TTATTGAAAT
AAGTTCGTTC GAAAGAGCTT ATTTTGATAA GTTTTCATAA AGTTTAATAA AATCAGAGAT TATAAGTCAA ATATTCATGA
GTCCTTAACA TTTCGGATGA AGCCTCCGTT ACAAACAATC AAGTTAGCAG AAAATACTCT CCGGAAAATC CAAGTACAGG
AAACATTACA TAGATGGTTG ATAACTGTTG CGAAAACAAC AATTTCTCTG AGCATTAGAT TACATTACAT TGATGAATTC
CAGAAACAAA CATCAACTCA CAGAAAATAA AGAATTAAAT GATGTAATTG TATATTCTCT CAGCTCAGCA ACTGAACATC
ATATTACTCT TCTCAGGTAA ACCTGGCAAC CACAAAAGCA AAGGCTACGA AAACAGCTTG CGCACAAAGA TGCACTCCTG
CACTTTCCAT CGGTGCGGGT GGAATTGCAG CAACATCTTC TACCACATTC TCAGCCACAC AACAGTGACC AAAAACTAAC
ATAGCAATAA TGCAGAAAGG AAGAACTATA GCAGTTCTGC AGCTCTCCAT TTTTGTACCA TCCATCACTT GATGAATAAC
TACTAGTTGG GCAGTGTTTG TAAATAGTTG TGAATGATGA AAATAGTGGA ACAGCACAAG TCATTTTATA GTTAGGATTT
GAGACAAGTG AGGAATTTTG ATGTGTAATA TGTAGCTGAA ACAGTAAACA CAATGATCTG AGAGTGTGTG GGTTAATGAT
AATGTTCTGT CTCCCTCACC TTAAACAAAT AGGGTGCTAG CACTGTATAA CGGTGCTGAG TTAGAAGTAT GTAATCAGCT
TTTGAAGCGT AAACATTAAG C

>Vigan.01G175000.01
CACGTGGCGA GGTTATAGCG TCTCGTTTGG CAGTGTGGAA ATTAGAAGAA ATCTGTGTTT TTTACAGTGT TAGAATCATG
CCAATGGCTT CGACTCTCAC AATTGTAAGA AATCCCATTT TCCTTACTCA CCATTACCAA TTCAACAAGC AGTTCACAAC
ACCTTCTTCC TTACGCCTCC TCAGTTTCGC AAAGATGGAA GGAAGTGAGA TTAGTGAGGA AGTGGGGGAG GATTCGAGAG
CGAAGAGGAA AATTTTTGTT GCTGGAGCCA CTGGTAGCAC TGGGAAAAGA ATCGTTGAGC AGTTATTGGC AAAGGGTTTT
TCTGTTAAGG CTGGGGTTAG GGATTTGGAC AAGGCCAAGT CCACCCTTTC CTCTGCCAAC CCATCTCTTC AAATTATAAA
AGCTGATGTC ACAGAGGGGT CTGATAAGCT AGCTGAAGCC ATTGGTGATG ATTCAGAAGC AGTGGTATGT GCCACGGGCT
TTCGGCCGGG CTGGGATTTG CTTGCTCCGT GGAAGGTTGA CAATTTTGGT ACTGTAAACC TTGTTGAAGC ATGCAGGAAA
CGTAATGTCA AGAGATTCAT TCTTATCAGT TCCATCTTAG TTAATGGAGC ATCTATGGGA CAGCTACTCA ATCCGGCTTA
CATCTTTCTT AATGTTTTTG GACTCACCTT AGTAGCAAAA CTACAGGCAG AGAATTATAT CAGGAAATCT GGCATAAACT
ACACAATTAT AAGACCGGGC GGGTTGAGAA ATGATCCTCC AACTGGAAAT GTTGTTATGG AGCCAGAGGA CACCCTTTAT
GAAGGTTCCA TATCCAGAGA TCAAGTTGCG GAAGTAGCTG TGGAGGCATT GGCTTATCCT GAGGCATCTT ACAAAGTCGT
GGAAATTGTG TCTCGCCCAG ATGCTGCTAA GCGTTCATAC CATGACCTTT TTGGTTCCAT AAGGCAGCGA TGATTCCCGA
CTTTATGATT TGCTTGCAGA TTAATGAATT TGTTTCTCTG TTATTTTACT TTGTGGTGGC CAATGTGTAT CTTAACTGTG
TTCCATTTGT GTTACTTCAT TCAATTGGTA TGCTAGAGTA ATATTGTAAA TATTTCAGTG CATCTTTTAT TTGTTCATCT
CCCACTCTCC CCCATTAACG GTGAGTTGAT AATGCACCGT GAGCACTATA GAACATAATA CTTAATTTAA TTAATACAAG
TTTGGAGCAT GCACTTAATA AGCTCTTACA AAACACGAGT CACAGTTACT AATAAGCTTA ACTGAAAGCT TATTGAAATA
AGTTCGTTCG AAAGAGCTTA TTTTGATAAG TTTTCATAAA GTTTAATAAA ATCAGAGATT ATAAGTCAAA TATTCATGAG
TCCTTAACAT TTCGGATGAA GCCTCCGTTA CAAACAATCA AGTTAGCAGA AAATACTCTC CGGAAAATCC AAGTACAGGA
AACATTACAT AGATGGTTGA TAACTGTTGC GAAAACAACA ATTTCTCTGA GCATTAGATT ACATTACATT GATGAATTCC
AGAAACAAAC ATCAACTCAC AGAAAATAAA GAATTAAATG ATGTAATTGT ATATTCTCTC AGCTCAGCAA CTGAACATCA
TATTACTCTT CTCAGGTAAA CCTGGCAACC ACAAAAGCAA AGGCTACGAA AACAGCTTGC GCACAAAGAT GCACTCCTGC
ACTTTCCATC GGTGCGGGTG GAATTGCAGC AACATCTTCT ACCACATTCT CAGCCACACA ACAGTGACCA AAAACTAACA
TAGCAATAAT GCAGAAAGGA AGAACTATAG CAGTTCTGCA GCTCTCCATT TTTGTACCAT CCATCACTTG ATGAATAACT
ACTAGTTGGG CAGTGTTTGT AAATAGTTGT GAATGATGAA AATAGTGGAA CAGCACAAGT CATTTTATAG TTAGGATTTG
AGACAAGTGA GGAATTTTGA TGTGTAATAT GTAGCTGAAA CAGTAAACAC AATGATCTGA GAGTGTGTGG GTTAATGATA
ATGTTCTGTC TCCCTCACCT TAAACAAATA GGGTGCTAGC ACTGTATAAC GGTGCTGAGT TAGAAGTATG TAATCAGCTT
TTGAAGCGTA AACATTAAGC 

>Vigan.01G175000.01
ATGCCAATGG CTTCGACTCT CACAATTGTA AGAAATCCCA TTTTCCTTAC TCACCATTAC CAATTCAACA AGCAGTTCAC
AACACCTTCT TCCTTACGCC TCCTCAGTTT CGCAAAGATG GAAGGAAGTG AGATTAGTGA GGAAGTGGGG GAGGATTCGA
GAGCGAAGAG GAAAATTTTT GTTGCTGGAG CCACTGGTAG CACTGGGAAA AGAATCGTTG AGCAGTTATT GGCAAAGGGT
TTTTCTGTTA AGGCTGGGGT TAGGGATTTG GACAAGGCCA AGTCCACCCT TTCCTCTGCC AACCCATCTC TTCAAATTAT
AAAAGCTGAT GTCACAGAGG GGTCTGATAA GCTAGCTGAA GCCATTGGTG ATGATTCAGA AGCAGTGGTA TGTGCCACGG
GCTTTCGGCC GGGCTGGGAT TTGCTTGCTC CGTGGAAGGT TGACAATTTT GGTACTGTAA ACCTTGTTGA AGCATGCAGG
AAACGTAATG TCAAGAGATT CATTCTTATC AGTTCCATCT TAGTTAATGG AGCATCTATG GGACAGCTAC TCAATCCGGC
TTACATCTTT CTTAATGTTT TTGGACTCAC CTTAGTAGCA AAACTACAGG CAGAGAATTA TATCAGGAAA TCTGGCATAA
ACTACACAAT TATAAGACCG GGCGGGTTGA GAAATGATCC TCCAACTGGA AATGTTGTTA TGGAGCCAGA GGACACCCTT
TATGAAGGTT CCATATCCAG AGATCAAGTT GCGGAAGTAG CTGTGGAGGC ATTGGCTTAT CCTGAGGCAT CTTACAAAGT
CGTGGAAATT GTGTCTCGCC CAGATGCTGC TAAGCGTTCA TACCATGACC TTTTTGGTTC CATAAGGCAG CGATGA

>Vigan.01G175000.01
MPMASTLTIV RNPIFLTHHY QFNKQFTTPS SLRLLSFAKM EGSEISEEVG EDSRAKRKIF VAGATGSTGK RIVEQLLAKG
FSVKAGVRDL DKAKSTLSSA NPSLQIIKAD VTEGSDKLAE AIGDDSEAVV CATGFRPGWD LLAPWKVDNF GTVNLVEACR
KRNVKRFILI SSILVNGASM GQLLNPAYIF LNVFGLTLVA KLQAENYIRK SGINYTIIRP GGLRNDPPTG NVVMEPEDTL
YEGSISRDQV AEVAVEALAY PEASYKVVEI VSRPDAAKRS YHDLFGSIRQ R*