VIGGS:GBrowse

Vigan.01G126200.01

Basic Information:

Name:	Vigan.01G126200.01 Multiple alignment Variant Information
Position:	Chr01:12497540..12499422 (+ strand)
Length:	1883

Functional Information:

Description:	Similar to Uncharacterized protein. [I1J7X9, Glycine max]
GO:	Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
	Cellular Component: nucleus (GO:0005634)
	Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700)
	Molecular Function: sequence-specific DNA binding (GO:0043565)
InterPro:	Heat shock factor (HSF)-type, DNA-binding (IPR000232)
	Winged helix-turn-helix DNA-binding domain (IPR011991)
	Heat shock transcription factor family (IPR027725)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:0.00,0.00,0.65,0.11,0.79,0.00,1.20,0.00

Automatic updates:

Name:	NM_001353461 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max heat stress transcription factor 27 (HSF-27), mRNA.
PubMed ID:	25416131 NCBI(pubmed)
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr01:12497540..12497591 (+ strand)
Length:	52
Type:	five_prime_UTR

Position:	Chr01:12497592..12497897 (+ strand)
Length:	306
Type:	CDS

Position:	Chr01:12499056..12499385 (+ strand)
Length:	330
Type:	CDS

Position:	Chr01:12499386..12499422 (+ strand)
Length:	37
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

>Vigan.01G126200.01 class=Sequence position=Chr01:12497540..12499422 (+ strand)
AAATGAATAG GTAATCATAG AGTTAGACTT GTGCACAATA ACATAAACAA GCATGGTTGA TAACAGTGTG TTAGAGCTGA
ACCTTGGTTT AGGTAACAAC AACAACAATA ACAACGTTGT TGGTGGTCAT GCACATGCAG GACAGTCACC GAGGCAAAGG
TGTCCGGCAC CATTTCTGTT GAAGACGTAC GATCTGTTGG AAGAAGGTGA GAGTGAAGAT ATGACAAGAA TAGTGTCGTG
GAATGAAGAA GGAAGTGCCT TTGTTGTGTG GTCTCCTGCA GAATTCTCTG AGCACACCTT GCCTAGATAT TTCAAGCACA
ACAACTTCTC TAGCTTCATT CGCCAATTGA ACACTTATGT AAGTTCCTAA CTTCTTTCAC CTCCTTTACG CTTTCACATA
CTCTCTTCTC TCAACATTTC TCATAAGGAA AACCAACTTA CAATTCTCAT ATTATCATAT CTTTACGTTC AAAGTTCAGT
ATTATATATC AACCACCTTG AATTTTCGAA ATTTCTGATT AAAAACATTA TGAAAGATCA ATTTTAAGAA GGATTTTACT
TATAATTTAA TCTTTCGATA ATAAGAGATA TAGGTTTAAC AAATTATAAA TCTTGTTAAA TCAAATGATT TTGATATAAT
AAATTTTTAA TTTGATTTAA TTACAAATAG GCATATAAAT TAATTTTTAC ATAATTTAAT CTTACTTTTA AGTAATTAAT
TAGATCTTTA ACCATCAAAA AATTTATTTG TAAAACAAAA AATCGGATTA TTTTTTTAAA TAAGGGTAGA ATGAGATACT
TTTACATTCA TTTAATATTT CGTATAAAAA TTTTATAAAA TGATAACTTT TTGTATTTTA TTTTAAGAAA AAAAAGAGTA
AAAAGTAAAA AAAAAAATAT AATTTCAAAT AAATGTAAAA AATTGTCTCT CAAAGTATAT TTTCTCTTTT TTCATGCTGT
AGCTTTATGT TTTCTTTGTT CAAAATTAGG ACGCTAGAAG GAGCTATGTA TTGAAAAGGA AAAATCATAG TTTTTTTTTT
TCTTTTTTTA ATAGGAGGAG GTATCGTAGT AAACAAAACA ATCAAACCAC GTTCATTCAA ATGAACGTCA AGTTAATGAA
TAATATATTT ATATAGAATG ATGGTCAAAT CAGTTATTTT GAACTAAAAG TCAAATTAGT CATACCAGAC GTACTTTACT
GCTTCACTTG GATTAGAGCA CACTTAATTT GAACATCCAC AAATTTTGTT GCTTATTTTG GATTAAAGAA TTTTCAGAAA
CTTTGACCAT CATCAACATT AACCTGATGA CGTGGAAATA ATATTTTTAT GTGTTCAACG CAGGCTGCTT CTACGTAATC
TCGTACCACT TTACTTCAAC ATTCAGAATA TAAGTTTAGT ATCTAAAAAA ATACTTGAAA ACACGCAACA GTGTTATACA
TAGTATTTGT AACGAAATAA AATAAAAAGT TGTTGATGTA ATAGGTGGTT GTGTTTTTTG TGAAATTTGA AAACAGGGAT
TTAAGAAAAT GTCATCGAAA AGATGGGAAT TCAAACACGA GAAATTTCAG AGGGGTTGCA GGCACATGCT AGGTGAAATC
ACAAGGAAAA AGTGCGAGCC AAGTGTTTTT CCTGCATACC TTAAGTCTTC TTCTGAGGAA AATGCAACGA GTTCCACAGA
AGAAAACAAT CAGCAACTTC TTATGGAGGA GAACAAGAAC CTTAAGAAGG AGAGATTAGA GCTTCAAATG CAGATTGATG
AATGCAAAGC ACTTGAAATG AAGTTGCTCG CATGCCTCTC TCAGTTTATG GACACCCAAC AAACTAAAAT TAGGAGACTT
TGTTAATTCA TATGGTTATA ATTAATAGGT CTTTATGTTA CCA

[show][hide][copy]TRANSCRIPT

>Vigan.01G126200.01
AAATGAATAG GTAATCATAG AGTTAGACTT GTGCACAATA ACATAAACAA GCATGGTTGA TAACAGTGTG TTAGAGCTGA
ACCTTGGTTT AGGTAACAAC AACAACAATA ACAACGTTGT TGGTGGTCAT GCACATGCAG GACAGTCACC GAGGCAAAGG
TGTCCGGCAC CATTTCTGTT GAAGACGTAC GATCTGTTGG AAGAAGGTGA GAGTGAAGAT ATGACAAGAA TAGTGTCGTG
GAATGAAGAA GGAAGTGCCT TTGTTGTGTG GTCTCCTGCA GAATTCTCTG AGCACACCTT GCCTAGATAT TTCAAGCACA
ACAACTTCTC TAGCTTCATT CGCCAATTGA ACACTTATGG ATTTAAGAAA ATGTCATCGA AAAGATGGGA ATTCAAACAC
GAGAAATTTC AGAGGGGTTG CAGGCACATG CTAGGTGAAA TCACAAGGAA AAAGTGCGAG CCAAGTGTTT TTCCTGCATA
CCTTAAGTCT TCTTCTGAGG AAAATGCAAC GAGTTCCACA GAAGAAAACA ATCAGCAACT TCTTATGGAG GAGAACAAGA
ACCTTAAGAA GGAGAGATTA GAGCTTCAAA TGCAGATTGA TGAATGCAAA GCACTTGAAA TGAAGTTGCT CGCATGCCTC
TCTCAGTTTA TGGACACCCA ACAAACTAAA ATTAGGAGAC TTTGTTAATT CATATGGTTA TAATTAATAG GTCTTTATGT
TACCA

[show][hide][copy]CDS

>Vigan.01G126200.01
ATGGTTGATA ACAGTGTGTT AGAGCTGAAC CTTGGTTTAG GTAACAACAA CAACAATAAC AACGTTGTTG GTGGTCATGC
ACATGCAGGA CAGTCACCGA GGCAAAGGTG TCCGGCACCA TTTCTGTTGA AGACGTACGA TCTGTTGGAA GAAGGTGAGA
GTGAAGATAT GACAAGAATA GTGTCGTGGA ATGAAGAAGG AAGTGCCTTT GTTGTGTGGT CTCCTGCAGA ATTCTCTGAG
CACACCTTGC CTAGATATTT CAAGCACAAC AACTTCTCTA GCTTCATTCG CCAATTGAAC ACTTATGGAT TTAAGAAAAT
GTCATCGAAA AGATGGGAAT TCAAACACGA GAAATTTCAG AGGGGTTGCA GGCACATGCT AGGTGAAATC ACAAGGAAAA
AGTGCGAGCC AAGTGTTTTT CCTGCATACC TTAAGTCTTC TTCTGAGGAA AATGCAACGA GTTCCACAGA AGAAAACAAT
CAGCAACTTC TTATGGAGGA GAACAAGAAC CTTAAGAAGG AGAGATTAGA GCTTCAAATG CAGATTGATG AATGCAAAGC
ACTTGAAATG AAGTTGCTCG CATGCCTCTC TCAGTTTATG GACACCCAAC AAACTAAAAT TAGGAGACTT TGTTAA

[show][hide][copy]PROTEIN

>Vigan.01G126200.01
MVDNSVLELN LGLGNNNNNN NVVGGHAHAG QSPRQRCPAP FLLKTYDLLE EGESEDMTRI VSWNEEGSAF VVWSPAEFSE
HTLPRYFKHN NFSSFIRQLN TYGFKKMSSK RWEFKHEKFQ RGCRHMLGEI TRKKCEPSVF PAYLKSSSEE NATSSTEENN
QQLLMEENKN LKKERLELQM QIDECKALEM KLLACLSQFM DTQQTKIRRL C*