GBrowse Details

Vigan.01G122900.01

Basic Information:
Name: Vigan.01G122900.01
Multiple alignment
Variant Information
Position: Chr01:12029649..12031507 (- strand)
Length: 1859
Functional Information:
Description: Similar to Uncharacterized protein. [I1M219, Glycine max]
GO: Cellular Component: nucleus (GO:0005634)
Molecular Function: DNA binding (GO:0003677)
InterPro: Transcription factor, SBP-box (IPR004333)
Squamosa promoter-binding protein (IPR017238)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.00,0.00,1.84,3.62,0.23,0.75,0.60,5.06
Arabidopsis thaliana homolog: AT2G33810.1
Automatic updates:
Name: NM_001249380 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527199 (LOC100527199), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:12029649..12029860 (- strand)
Length: 212
Type: three_prime_UTR
Position: Chr01:12029861..12029969 (- strand)
Length: 109
Type: CDS
Position: Chr01:12030923..12031248 (- strand)
Length: 326
Type: CDS
Position: Chr01:12031249..12031507 (- strand)
Length: 259
Type: five_prime_UTR

>Vigan.01G122900.01 class=Sequence position=Chr01:12029649..12031507 (- strand)
GTTTTCTTCA ATCGTACATA CTACATACCT ATGGCTTATC TACTTTTTGT TTCCGACCTT TTACTGTTAC CCCTAGTTGT
CAACAGAAAA ATGGAGACCA AAACCAAGAC CCTATGTGGT CCTCACCAAT TTCTCTCATA TCCTATTTAC CCTTCTGGTT
TTTACTATTT ATATCAAATA TTTATGGTCA TGTCTTCCAT ATGTAACTCC TGAGTCTTTT TTTTTTCTCA GAACTTTCTT
CTGGATCTCT GAGGAATTTA TGGACGCAAG CAGGTCTGAG GGAAAGAGAG TCTTGAGGTA CAGCGAGGAG GAGGAAGACG
AAGAAGAAGA AGAAGAGGAA GAGGCTGAGA CGGTTTTAGG AGACGATGGA AGGAGGAATA AGAGAGTAAT GAGAGATCTC
TATGGAAAGA AAGGGTCGAA AGCTGGAGGC TCAATGCCAC CTTCTTGTCA GGTGGATAAC TGTGATGCTG ATCTAAGTGA
AGCTAAGCAG TATCACAGAA GACACAAGGT TTGTGAGTAC CATGCCAAGG CTCATTCCGT ACACATGGCA GGGCTGCAAC
AAAGGTTTTG CCAACAATGT AGCAGGTCCT GAAACCCTAA TCTCTTTGAA GCAGAATGAA TTTTGTGAAT CTGATTATGC
CTTTATATTT ATTGTCTGCA TATCTTTTAT TCAAACTTAA TCTTAGCTGT GAACTGCCTG AGGGAAAAAT GGTTTGATTA
GAATTTTGTT AGTTATATCT ATATCTTTTC AAGCAGCCCT AGTTAGTTTG AGGAAGGGAG AAAAGAAAAC CCTTCAATTT
GAATATGGGG CATGATTGGA GGGGAAATGA AAGATGTGCT TCGGCTTTGT GTTGTTGAGT CTTTTGCCAA GCCTCACTCT
CTGCTTCTTT TGTTTCTTCC TTCAATTATT TACCAAACTT GGCTGTAATA AACAGTTCCT TTGTATTGCT GTGTTTTCAA
GAAAGATTTA GCGACTCAAA ATGGAAAAAA AAAAGAAACT TGGCCATTGA GGATTCTCCA CATTACCCTG ATTATAGAAT
GTGAAATTTT ATAACATTAT AGAAAATTAA AATCCAAGGA CGAAATTAAT ATGCTCAATG GAGTCAAAAC ATTTTTCTCT
AGGTGGCCAG CTATTTATAT TCGTCAATAT ATATCTTAAC TAGATATTAG ATATATTTTT CTTCTTCTGA ATGATGTTTA
CCAATACAAT AGGATGGATC GAACTTTTAC TTTTGATCAT TTTTAGATTT GGAATCACCG TTTTGAACTT AAAGGTTGAC
AAAACTCATT GGGTTTTATT GGTTAATTTT AACCAGTGGC ATATTGTTGA CAAAACATGA TTTAGGGTAA CACCCATTTT
ATCAAAACAA GAGTTGTTCT TCAGTTTTGA TGCATTGATA GTATAATTAC ACTAACCCTC TTCTAGATGA TAGGGAGTAT
TTGATCCTGT CCTGCATGGT GTAAAGTAAA TCAACTGAAA AACATGTATT GTTCTAGATT GCAGAAACTA ACTTTTCTTC
AAAAATTCTG TTTTTCAGAT TCCATGAACT GTCTGAATTT GATGAATCGA AAAGGAGTTG TAGAACACGG TTGGTTGGTC
ATAACGAGAG GCGACGCAAA AATGCAGTTG ACTATCGTGG AGATTAATTT CTTCTTTTTG AACGATGAAC ATTAATAAAC
CTTGAGGCAA GCATGTGATT GAAATAAAAT TTCCCGTTGA GATCTTGAAA CTCAAATCAT TCTTGCTGGC CTCTAAACAT
GCTCTCTATC TTCTGTCAAT ATTTTCATAT GCTACGATTG TTGCTGTTGT AAGTTACAAC TATGGATGAT TAATGACATC
AAATTTTACT ATATTTTGG

>Vigan.01G122900.01
GTTTTCTTCA ATCGTACATA CTACATACCT ATGGCTTATC TACTTTTTGT TTCCGACCTT TTACTGTTAC CCCTAGTTGT
CAACAGAAAA ATGGAGACCA AAACCAAGAC CCTATGTGGT CCTCACCAAT TTCTCTCATA TCCTATTTAC CCTTCTGGTT
TTTACTATTT ATATCAAATA TTTATGGTCA TGTCTTCCAT ATGTAACTCC TGAGTCTTTT TTTTTTCTCA GAACTTTCTT
CTGGATCTCT GAGGAATTTA TGGACGCAAG CAGGTCTGAG GGAAAGAGAG TCTTGAGGTA CAGCGAGGAG GAGGAAGACG
AAGAAGAAGA AGAAGAGGAA GAGGCTGAGA CGGTTTTAGG AGACGATGGA AGGAGGAATA AGAGAGTAAT GAGAGATCTC
TATGGAAAGA AAGGGTCGAA AGCTGGAGGC TCAATGCCAC CTTCTTGTCA GGTGGATAAC TGTGATGCTG ATCTAAGTGA
AGCTAAGCAG TATCACAGAA GACACAAGGT TTGTGAGTAC CATGCCAAGG CTCATTCCGT ACACATGGCA GGGCTGCAAC
AAAGGTTTTG CCAACAATGT AGCAGATTCC ATGAACTGTC TGAATTTGAT GAATCGAAAA GGAGTTGTAG AACACGGTTG
GTTGGTCATA ACGAGAGGCG ACGCAAAAAT GCAGTTGACT ATCGTGGAGA TTAATTTCTT CTTTTTGAAC GATGAACATT
AATAAACCTT GAGGCAAGCA TGTGATTGAA ATAAAATTTC CCGTTGAGAT CTTGAAACTC AAATCATTCT TGCTGGCCTC
TAAACATGCT CTCTATCTTC TGTCAATATT TTCATATGCT ACGATTGTTG CTGTTGTAAG TTACAACTAT GGATGATTAA
TGACATCAAA TTTTACTATA TTTTGG

>Vigan.01G122900.01
ATGGACGCAA GCAGGTCTGA GGGAAAGAGA GTCTTGAGGT ACAGCGAGGA GGAGGAAGAC GAAGAAGAAG AAGAAGAGGA
AGAGGCTGAG ACGGTTTTAG GAGACGATGG AAGGAGGAAT AAGAGAGTAA TGAGAGATCT CTATGGAAAG AAAGGGTCGA
AAGCTGGAGG CTCAATGCCA CCTTCTTGTC AGGTGGATAA CTGTGATGCT GATCTAAGTG AAGCTAAGCA GTATCACAGA
AGACACAAGG TTTGTGAGTA CCATGCCAAG GCTCATTCCG TACACATGGC AGGGCTGCAA CAAAGGTTTT GCCAACAATG
TAGCAGATTC CATGAACTGT CTGAATTTGA TGAATCGAAA AGGAGTTGTA GAACACGGTT GGTTGGTCAT AACGAGAGGC
GACGCAAAAA TGCAGTTGAC TATCGTGGAG ATTAA

>Vigan.01G122900.01
MDASRSEGKR VLRYSEEEED EEEEEEEEAE TVLGDDGRRN KRVMRDLYGK KGSKAGGSMP PSCQVDNCDA DLSEAKQYHR
RHKVCEYHAK AHSVHMAGLQ QRFCQQCSRF HELSEFDESK RSCRTRLVGH NERRRKNAVD YRGD*