GBrowse Details

Vigan.01G113200.01

Basic Information:
Name: Vigan.01G113200.01
Multiple alignment
Variant Information
Position: Chr01:10611072..10614872 (- strand)
Length: 3801
Functional Information:
Description: Similar to 14-3-3 protein. [T2DNM7, Phaseolus vulgaris]
GO: Molecular Function: protein domain specific binding (GO:0019904)
InterPro: 14-3-3 protein (IPR000308)
14-3-3 protein, conserved site (IPR023409)
14-3-3 domain (IPR023410)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:98.55,48.25,118.04,91.88,147.96,214. 09,154.52,98.23
Automatic updates:
Name: NM_001354029 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max 14-3-3 protein SGF14c (GF14C), transcript variant 6, mRNA.
PubMed ID: 23060368 NCBI(pubmed)
21120521 NCBI(pubmed)
Status: Known Variant
Name: NM_001354030 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max 14-3-3 protein SGF14c (GF14C), transcript variant 2, mRNA.
PubMed ID: 23060368 NCBI(pubmed)
21120521 NCBI(pubmed)
Status: Known Variant
Name: NM_001354031 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max 14-3-3 protein SGF14c (GF14C), transcript variant 5, mRNA.
PubMed ID: 23060368 NCBI(pubmed)
21120521 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr01:10611072..10611537 (- strand)
Length: 466
Type: three_prime_UTR
Position: Chr01:10611538..10611587 (- strand)
Length: 50
Type: CDS
Position: Chr01:10612738..10612886 (- strand)
Length: 149
Type: CDS
Position: Chr01:10613008..10613117 (- strand)
Length: 110
Type: CDS
Position: Chr01:10613796..10613883 (- strand)
Length: 88
Type: CDS
Position: Chr01:10613965..10614271 (- strand)
Length: 307
Type: CDS
Position: Chr01:10614480..10614552 (- strand)
Length: 73
Type: CDS
Position: Chr01:10614553..10614872 (- strand)
Length: 320
Type: five_prime_UTR

>Vigan.01G113200.01 class=Sequence position=Chr01:10611072..10614872 (- strand)
TTTTCAAAAA GACAAAAAAA GTGAATTTGA AATTTCAATG CCCACCAAAC GCCAATCAAT TTGCCTCCCT CCCAATCCCA
CGCGCCTACC TCTCCCGTCA CCATCACAGC CTCCCCACTC TTTGCATGAA CACAAACGCG TGACAAACAC TCTCCCTGAT
ACGCGTGCGG AATCGTGATC GCCCACGACC AACCCGTGCC GTCGTGCCCT GTCTCTCCAC AACTAACCCT GCGCTCATCA
ACTTGCAAAC ACTCACAACA CAACACACAC AATTTTCTAG AGAGAGAAAG TGAGAGGAGA GAGAAAGTTG CAGATCCTCC
ATGGCCTCCA CCAAGGAACG CGATAACTTC GTCTACGTTG CCAAGCTCGC CGAACAAGCC GAACGCTATG AAGGTACTTT
GTAGTAATCC ATTCTTTTAA ATGCTTCCAC GCTGTCGGTT TTTTTTTTCT ACCGATTTTT CTGCGTTGAG ATTTGAGAGT
CACTACTGTG CTGACCTAGA TGTTTAATTT GGAAATCACT TTTTCTGGTT TAATTTGAAT TTGTTTTGAA TTTGAATTTC
GTGGAGACGA ATTCTGAGAT TTAGAGTGTT TGATGTGGTA GAAATGGTGG ATGCAATGAA GAATGTGGCG AAGCTAAACG
TGGAACTGAC GGTTGAGGAG CGGAACCTTT TGTCGGTAGG GTACAAGAAC GTGGTGGGTG CTCGTAGGGC TTCGTGGAGG
ATTCTTTCGT CGATTGAGCA GAAGGAAGAG GCGAAAGGGA ACGATGTGAG TGTGAAGCGG ATAAAGGAGT ATAGGCAGAA
GGTGGAGTCT GAGTTGTCCA ATATCTGCAG TGATATCATG ACTGTTATTG ATGAGCACCT TATCCCCTCT AGCACTACTG
GTGAACCTAG TGTCTTTTTC TACAAAATGT GAGTGCTGAC TTGTCTTTTT TGTCTCTCAC TGTGGATTTA GAGTTTCATG
TGTGTTCATG TCTCTGTTGT TGGCTGCAGG AAGGGTGACT ATTACCGGTA TCTCGCGGAG TTCAAGTCCG GTGAAGAGAG
AAAAGAGGCT GCTGATCATT CCATGAAAGC GTATCAGGTA TGCTTGTATT TTCGACCTCT TGCATCTGTT GTGGTTACAA
TTTTAAAATG TCTTGATCTT TGATGCCTGG TGATTCATGA TGTATGCTGT TGGTTGCTTT GCTTCTTAGC ATGTCTCCAG
TAACCAAGGG CAGAGAGGAG AAACGATATG TTTTTGCATT CCTTTATTGT TAACTTGCAA GTCTTGCTTA TTGGTTTTTC
CTTTTGCTAA TCTGATGATG TCAATGAGTC ATTGACTTTT TTAAAAAATT CCCTCAAGGT AATTGTCTAG TCAACCATCT
ATTATTGTAA TATAAATCAT ATGATTGGAA TACTGTCGAC ACTAATGTTA ATATGTATGC TTATGTTGAT GGATTGTTTG
CCATAGTCAT TGGCCATGTG AATATTGAAA TAGTGATTCT AGTGGTTCTT TATCATCAAG GTTGTAGTAT ACACGGTAAT
GAGGGAAAAA TTAAATGAGG GAGCGAGGGA GTATGGATAC AGTAGGTTAG TGTTTGTTTT TCAGGCATAA TTTCATCATA
CCAAGTTTCT GTCTTGTGAC TTTTTATCAG CTTTACTAGT GTGGCACTAT AACATTTATT TAGATGTAGG CATCACTGAT
ATGAATTTGG CTGCTAACTT GCCAAAGTAT ATTTCGGCCT TTCATGTTGA TCTGAACAAT TCTTAATTAT TTCAGACAGC
TTCCACTACT GCAGAGGCTG AGTTACCTCC TACGCATCCT ATCCGACTGG GTCTGGCTTT GAACTTCTCT GTCTTTTATT
ATGAAATTTT GAACTCTCCT GAAAGGTATT GGTTTTATAT TTTATTGTCC TGAGTATTAT TGTTTATTGG CTCCCCTCCT
TGTTAATATA CTATGTGTCT AAGTTTGCCT GTTTAACAAG TTTAACTCTG TACTCTTATA TTTCAGGGCT TGTCACCTTG
CAAAGCAAGC ATTTGATGAA GCAATCTCTG AGTTGGATAC TCTGAGTGAG GAGTCTTACA AAGACAGCAC CCTAATTATG
CAGCTTCTGA GGGACAACCT CACCTTGTGG ACTTCTGACA TCCCTGAAGA TGGAGGTAGT GATTAATGGA AATTAATGTT
CTCTATCACT TTGTTAGCTA GACTTTGTCT GCAATGTAAA TTACATAGAT GATTTTTCTT AGTGTAAATT ACACATTCTC
CGAGGTTTAA CAAAATTTCA CCTGACACCC CTCCTTTTTT TTTTACCCTT CGCAAACCTT TGTTTATTTA TGATTCGTAA
CACCACATAC CCTGACCATT AATACAGATA TCCTATTTTT TATGTAGTTA CATAGATTAA GGAAGGACAA AGTAATGTAA
AAAGAGGGAG GGATATTATT GGGTCACTAA TTTCTTGAAA TATACGGTGA TTGTGTAACT TGTCCGATTT TATTTTTTTA
TTTGATATAG AAAGTCCATT TCAGGTATAG TGGATACTGT CGTGATTTAT GGTTGATATG GTTATTCGTT TGTGGTCGTT
GTGACTTCCT TTTATGTGAT GTTATGCTTA TTTGGAGAGA AATTTACTAC ACAAGTTTTT GGTGGATCTC TATGCCTGTT
ATTATCAATG CACTACATTT TTCGGCGAGT AAATATCGAT TCTTACTTTG TTGTGTCTCC AAACAAGATT GAAAGAATGA
GATGGTAATA ACTTGTACAT AATTGGAATT GATTTGTTCC GAAAAAAGTC AATACTTTCC TTTGCAAATA ATTGAATAAT
CCTGTTTTTT AGAACTCCAG AGTATAGAAG AAAAGCCTGT ACCTCGCAGT GTAACACTCT AAGTTGAAAA TAAACTAGGG
ACGATTTGGG AAATCTGATC AAGATATTAT TGTTAAATTG CTTTGAAGCA ACAAATTTAA AAAATGTTGA CTTCATTGAA
AAGCTTTGAG AAATGTTTAA CTTCATCTTC CATGTGATCT TAATCCACAA ATTCTTGCAA CCTAGAGGCA ACTTAAATTT
TTCGTAAGGT GATGTTTTCC CAGTTTTGTT TTTCAATCTT TGTTTACACT AATGTATTCC TTCTATTGGT TATCATATTT
GATGTTGATT TACTGACAAA TATACTTATT TTTCTGTTCT TTTAGACTTG GCTATTCCTT CTCATTTTTA TTTTATAGCT
ATTTTCCTTT CGTTGTTCTG TGATCCTGCC AACCCAACAC TAGTATCTAT GGTTCCCTAG CTAATTAAAT ATTCTTTTTT
AACAGAAGAA CAAAAGGTGG ATTCTGTCCG AGCTGCTGGT GGTGAAGAGG CATAGGTAGG TTGTCTACCG TGTAAGCAAA
TGATATAGGG TTTTACCTTT TACCTTAACA AAGTTACATT TTGCAATGAA GTGAAGCAGG TATTGGCTAG GAATTGGTGT
GCATACGAGA AGGCTAGCCT CTGTCGTGAT AGTTTACATT TAGGATGTTG CAATAGAGCA TGTTGTTGGT CTCTAGAAAA
TCACCATAGA GCTTTGTGAT CCTTTTATTC TATGCGTGTG CTTTCTGTTA CTGCAGACGA TTTGCATGGT GTTTCGCTGT
AATCTAGTGA ATTGCTTCAT TTTGTTGACT TCATCTTTCT AAGAGGATGC TTCCTTGCAT TCTTTTATCT GTTTACATAA
TATTTATTTA AAATTATGCC AATCATTGTT CCACAAGAAA ATTGAATTAT GGACTTCGAT TTCCATCAGA TTTCAGGTTA
AAATTTTCTT GGTGTTTGAC CGGAGTTTAA CCGTTTACCA A

>Vigan.01G113200.01
TTTTCAAAAA GACAAAAAAA GTGAATTTGA AATTTCAATG CCCACCAAAC GCCAATCAAT TTGCCTCCCT CCCAATCCCA
CGCGCCTACC TCTCCCGTCA CCATCACAGC CTCCCCACTC TTTGCATGAA CACAAACGCG TGACAAACAC TCTCCCTGAT
ACGCGTGCGG AATCGTGATC GCCCACGACC AACCCGTGCC GTCGTGCCCT GTCTCTCCAC AACTAACCCT GCGCTCATCA
ACTTGCAAAC ACTCACAACA CAACACACAC AATTTTCTAG AGAGAGAAAG TGAGAGGAGA GAGAAAGTTG CAGATCCTCC
ATGGCCTCCA CCAAGGAACG CGATAACTTC GTCTACGTTG CCAAGCTCGC CGAACAAGCC GAACGCTATG AAGAAATGGT
GGATGCAATG AAGAATGTGG CGAAGCTAAA CGTGGAACTG ACGGTTGAGG AGCGGAACCT TTTGTCGGTA GGGTACAAGA
ACGTGGTGGG TGCTCGTAGG GCTTCGTGGA GGATTCTTTC GTCGATTGAG CAGAAGGAAG AGGCGAAAGG GAACGATGTG
AGTGTGAAGC GGATAAAGGA GTATAGGCAG AAGGTGGAGT CTGAGTTGTC CAATATCTGC AGTGATATCA TGACTGTTAT
TGATGAGCAC CTTATCCCCT CTAGCACTAC TGGTGAACCT AGTGTCTTTT TCTACAAAAT GAAGGGTGAC TATTACCGGT
ATCTCGCGGA GTTCAAGTCC GGTGAAGAGA GAAAAGAGGC TGCTGATCAT TCCATGAAAG CGTATCAGAC AGCTTCCACT
ACTGCAGAGG CTGAGTTACC TCCTACGCAT CCTATCCGAC TGGGTCTGGC TTTGAACTTC TCTGTCTTTT ATTATGAAAT
TTTGAACTCT CCTGAAAGGG CTTGTCACCT TGCAAAGCAA GCATTTGATG AAGCAATCTC TGAGTTGGAT ACTCTGAGTG
AGGAGTCTTA CAAAGACAGC ACCCTAATTA TGCAGCTTCT GAGGGACAAC CTCACCTTGT GGACTTCTGA CATCCCTGAA
GATGGAGAAG AACAAAAGGT GGATTCTGTC CGAGCTGCTG GTGGTGAAGA GGCATAGGTA GGTTGTCTAC CGTGTAAGCA
AATGATATAG GGTTTTACCT TTTACCTTAA CAAAGTTACA TTTTGCAATG AAGTGAAGCA GGTATTGGCT AGGAATTGGT
GTGCATACGA GAAGGCTAGC CTCTGTCGTG ATAGTTTACA TTTAGGATGT TGCAATAGAG CATGTTGTTG GTCTCTAGAA
AATCACCATA GAGCTTTGTG ATCCTTTTAT TCTATGCGTG TGCTTTCTGT TACTGCAGAC GATTTGCATG GTGTTTCGCT
GTAATCTAGT GAATTGCTTC ATTTTGTTGA CTTCATCTTT CTAAGAGGAT GCTTCCTTGC ATTCTTTTAT CTGTTTACAT
AATATTTATT TAAAATTATG CCAATCATTG TTCCACAAGA AAATTGAATT ATGGACTTCG ATTTCCATCA GATTTCAGGT
TAAAATTTTC TTGGTGTTTG ACCGGAGTTT AACCGTTTAC CAA

>Vigan.01G113200.01
ATGGCCTCCA CCAAGGAACG CGATAACTTC GTCTACGTTG CCAAGCTCGC CGAACAAGCC GAACGCTATG AAGAAATGGT
GGATGCAATG AAGAATGTGG CGAAGCTAAA CGTGGAACTG ACGGTTGAGG AGCGGAACCT TTTGTCGGTA GGGTACAAGA
ACGTGGTGGG TGCTCGTAGG GCTTCGTGGA GGATTCTTTC GTCGATTGAG CAGAAGGAAG AGGCGAAAGG GAACGATGTG
AGTGTGAAGC GGATAAAGGA GTATAGGCAG AAGGTGGAGT CTGAGTTGTC CAATATCTGC AGTGATATCA TGACTGTTAT
TGATGAGCAC CTTATCCCCT CTAGCACTAC TGGTGAACCT AGTGTCTTTT TCTACAAAAT GAAGGGTGAC TATTACCGGT
ATCTCGCGGA GTTCAAGTCC GGTGAAGAGA GAAAAGAGGC TGCTGATCAT TCCATGAAAG CGTATCAGAC AGCTTCCACT
ACTGCAGAGG CTGAGTTACC TCCTACGCAT CCTATCCGAC TGGGTCTGGC TTTGAACTTC TCTGTCTTTT ATTATGAAAT
TTTGAACTCT CCTGAAAGGG CTTGTCACCT TGCAAAGCAA GCATTTGATG AAGCAATCTC TGAGTTGGAT ACTCTGAGTG
AGGAGTCTTA CAAAGACAGC ACCCTAATTA TGCAGCTTCT GAGGGACAAC CTCACCTTGT GGACTTCTGA CATCCCTGAA
GATGGAGAAG AACAAAAGGT GGATTCTGTC CGAGCTGCTG GTGGTGAAGA GGCATAG

>Vigan.01G113200.01
MASTKERDNF VYVAKLAEQA ERYEEMVDAM KNVAKLNVEL TVEERNLLSV GYKNVVGARR ASWRILSSIE QKEEAKGNDV
SVKRIKEYRQ KVESELSNIC SDIMTVIDEH LIPSSTTGEP SVFFYKMKGD YYRYLAEFKS GEERKEAADH SMKAYQTAST
TAEAELPPTH PIRLGLALNF SVFYYEILNS PERACHLAKQ AFDEAISELD TLSEESYKDS TLIMQLLRDN LTLWTSDIPE
DGEEQKVDSV RAAGGEEA*