GBrowse Details

Vigan.01G106200.01

Basic Information:
Name: Vigan.01G106200.01
Multiple alignment
Variant Information
Position: Chr01:9115389..9116854 (+ strand)
Length: 1466
Functional Information:
Description: Similar to AWPM-19-like family protein. [XP_007025202.1, Theobroma cacao]
InterPro: AWPM-19-like (IPR008390)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.14,0.74,3.38,0.21,0.46,0.68,7.85,0.27
Automatic updates:
Name: NM_001248589 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527398 (LOC100527398), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:9115389..9115846 (+ strand)
Length: 458
Type: five_prime_UTR
Position: Chr01:9115847..9115973 (+ strand)
Length: 127
Type: CDS
Position: Chr01:9116073..9116292 (+ strand)
Length: 220
Type: CDS
Position: Chr01:9116380..9116425 (+ strand)
Length: 46
Type: CDS
Position: Chr01:9116514..9116603 (+ strand)
Length: 90
Type: CDS
Position: Chr01:9116604..9116854 (+ strand)
Length: 251
Type: three_prime_UTR

>Vigan.01G106200.01 class=Sequence position=Chr01:9115389..9116854 (+ strand)
AGAAACAGTG TAAGATTTTT TTAACTGGGA TTGGGGCCAG TGTTGTGAAT GAGAAGAGTG AAGGAGTGGA AAAGAATATG
ACTAGCCTCA CAGAACAAAC TACTGACAAC TATTAAGATG TTGCCTGTTG AGAAGGTATT ACAGTTAAAC AAACCATAAA
AGTATGAGGC AAGTATGAGG CAAGTAAGAA TCAGTCATAT TTAGATGTGA AGTGTGGCTA TGAAGCATCA TCTTTACAGA
CCTGCATGGA GCTTTTGAAC TAACTAGCAG CCTTGTCAAG AAAAGAACCC AAACTTCTGT TTTATCCATT TCAGATATTT
ATAGGAACTC TCATTTGTAC AAAACATATG CATCTCCTGC TCCTTGGATA GCCTTTCCTT CACTGCTTTT AAGGTTCCTT
AAATCCCATA GCATAACACT TTTCTTGTTC CCAGCACCCT TTTACTTATC TAGAAAACAT GGCTAATGAG CAAATGAAGC
CCATTGCCAC CCTTCTTTTG GTGTTGAACT TCTGCATGTA TGCCGTAGTT TTGGGCATTG GTGGATGGGC AATGAACAGA
GCAATAGATC ATGGTTTTAT CATAGGTGAG GAAATTTATA ATGTCCCTAT GTTTCCTCCA ATGCAACCAA CCAACCATTA
TGTTTCTTCA GCATGCTTAT GCTGTTAAGA CACTATTTTT GCAGGTCCAG AATTAAAACT GCCAGCACAC TTTTCACCCT
TATTCTTCCC AATGGGAAAT GCTTCCACTG GATTCTTTGT AACATTTGCT TTGCTTGCTG GAGTGGTTGG TGCTGCATCA
GCAATATCAG GAATCACTCA TATCCGGTCG TGGACTGCTG AGAGCTTACC ATCTGCAGCT TCAGTTGCTA CCATGGCTTG
GACTCTTACA CTCTTGGCCA TGGGGTAATG TTTTCTCTAT TCTTCACCCC CTCCCAAAAA ATAATTATGC AGGATTATTT
CACTTATCTT ACCAGAATCA AATTTATGCA GCTTTGCTTG GAAAGAGATT GGACTTCGTG TAAGAAATGC ACGTCTGGTA
AGACAGGAAG ATTCATTTAC TTTCTTAATA GCATTCTTGT AGTATTTGTT CATCATTCAG ACCTCTGAAA TGTCCAATTT
TGCAGAAAAC AATGGAGTCT TTTATAATTA TACTTTCAGC TACACAGCTT TTCTACATAT TTGCCATTCA TAGTGCTGCT
GCATACAGAA GATAAAACGG AAGGTTGAGG GAATATGGTG GTGGTGGTGG TTTTCTTTTT TCTTTTTTTT CCTTTTTTTG
CTATGAAGGC TTGTATTGGT GTGCTTGTAT TTTTCTCTTC CATTTCTTTC TTTTTCTGCT CAAAGGAAAA TTAGCATCAG
AGTGTGGTTT GAATGATTGG AATTGTATGA ATCAATAATA CATCATTTAC AAGAGCAATA AAGGAGAACA TGCTCCCTTT
TAAGTTATTT CAAACCGTCC TTTTCA

>Vigan.01G106200.01
AGAAACAGTG TAAGATTTTT TTAACTGGGA TTGGGGCCAG TGTTGTGAAT GAGAAGAGTG AAGGAGTGGA AAAGAATATG
ACTAGCCTCA CAGAACAAAC TACTGACAAC TATTAAGATG TTGCCTGTTG AGAAGGTATT ACAGTTAAAC AAACCATAAA
AGTATGAGGC AAGTATGAGG CAAGTAAGAA TCAGTCATAT TTAGATGTGA AGTGTGGCTA TGAAGCATCA TCTTTACAGA
CCTGCATGGA GCTTTTGAAC TAACTAGCAG CCTTGTCAAG AAAAGAACCC AAACTTCTGT TTTATCCATT TCAGATATTT
ATAGGAACTC TCATTTGTAC AAAACATATG CATCTCCTGC TCCTTGGATA GCCTTTCCTT CACTGCTTTT AAGGTTCCTT
AAATCCCATA GCATAACACT TTTCTTGTTC CCAGCACCCT TTTACTTATC TAGAAAACAT GGCTAATGAG CAAATGAAGC
CCATTGCCAC CCTTCTTTTG GTGTTGAACT TCTGCATGTA TGCCGTAGTT TTGGGCATTG GTGGATGGGC AATGAACAGA
GCAATAGATC ATGGTTTTAT CATAGGTCCA GAATTAAAAC TGCCAGCACA CTTTTCACCC TTATTCTTCC CAATGGGAAA
TGCTTCCACT GGATTCTTTG TAACATTTGC TTTGCTTGCT GGAGTGGTTG GTGCTGCATC AGCAATATCA GGAATCACTC
ATATCCGGTC GTGGACTGCT GAGAGCTTAC CATCTGCAGC TTCAGTTGCT ACCATGGCTT GGACTCTTAC ACTCTTGGCC
ATGGGCTTTG CTTGGAAAGA GATTGGACTT CGTGTAAGAA ATGCACGTCT GAAAACAATG GAGTCTTTTA TAATTATACT
TTCAGCTACA CAGCTTTTCT ACATATTTGC CATTCATAGT GCTGCTGCAT ACAGAAGATA AAACGGAAGG TTGAGGGAAT
ATGGTGGTGG TGGTGGTTTT CTTTTTTCTT TTTTTTCCTT TTTTTGCTAT GAAGGCTTGT ATTGGTGTGC TTGTATTTTT
CTCTTCCATT TCTTTCTTTT TCTGCTCAAA GGAAAATTAG CATCAGAGTG TGGTTTGAAT GATTGGAATT GTATGAATCA
ATAATACATC ATTTACAAGA GCAATAAAGG AGAACATGCT CCCTTTTAAG TTATTTCAAA CCGTCCTTTT CA

>Vigan.01G106200.01
ATGGCTAATG AGCAAATGAA GCCCATTGCC ACCCTTCTTT TGGTGTTGAA CTTCTGCATG TATGCCGTAG TTTTGGGCAT
TGGTGGATGG GCAATGAACA GAGCAATAGA TCATGGTTTT ATCATAGGTC CAGAATTAAA ACTGCCAGCA CACTTTTCAC
CCTTATTCTT CCCAATGGGA AATGCTTCCA CTGGATTCTT TGTAACATTT GCTTTGCTTG CTGGAGTGGT TGGTGCTGCA
TCAGCAATAT CAGGAATCAC TCATATCCGG TCGTGGACTG CTGAGAGCTT ACCATCTGCA GCTTCAGTTG CTACCATGGC
TTGGACTCTT ACACTCTTGG CCATGGGCTT TGCTTGGAAA GAGATTGGAC TTCGTGTAAG AAATGCACGT CTGAAAACAA
TGGAGTCTTT TATAATTATA CTTTCAGCTA CACAGCTTTT CTACATATTT GCCATTCATA GTGCTGCTGC ATACAGAAGA
TAA

>Vigan.01G106200.01
MANEQMKPIA TLLLVLNFCM YAVVLGIGGW AMNRAIDHGF IIGPELKLPA HFSPLFFPMG NASTGFFVTF ALLAGVVGAA
SAISGITHIR SWTAESLPSA ASVATMAWTL TLLAMGFAWK EIGLRVRNAR LKTMESFIII LSATQLFYIF AIHSAAAYRR
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