GBrowse Details

Vigan.01G106100.01

Basic Information:
Name: Vigan.01G106100.01
Multiple alignment
Variant Information
Position: Chr01:9113412..9114614 (+ strand)
Length: 1203
Functional Information:
Description: Similar to Os11g0133900 protein. [Q0IUU7, Oryza sativa subsp. japonica]
InterPro: Complex 1 LYR protein (IPR008011)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:4.41,4.70,5.55,5.98,11.59,7.20,6.43,7.39
Arabidopsis thaliana homolog: AT5G51960.1
Automatic updates:
Name: NM_001249439 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100500324 (LOC100500324), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:9113412..9113576 (+ strand)
Length: 165
Type: five_prime_UTR
Position: Chr01:9113577..9113786 (+ strand)
Length: 210
Type: CDS
Position: Chr01:9114167..9114280 (+ strand)
Length: 114
Type: CDS
Position: Chr01:9114281..9114614 (+ strand)
Length: 334
Type: three_prime_UTR

>Vigan.01G106100.01 class=Sequence position=Chr01:9113412..9114614 (+ strand)
AAACCTTCTT TGTTCTCTCC AGTCGAATTG CTTTCTTTTA TACCTCCCCA TCCTCTCATC ATTTAGTTCT AGTTTTTTTA
TTTATTTTCT GCTAATAAGA TTCCTAAATA TTTAAAATAT GGCATCCTGT GCAGGAAAGT AGATTGTGGA TACTGATAGA
AACAAATGAG ATCCGACACG GCTAGTATCT ATCGCCATCT TCTCAAGGCG GTCAAGAAAC ATATTGGGAA TGAAGAGAAC
AAGAGTCATT TTTTAAAATT TGTAACCTCG GAGTTCCGTA ACAACAAAAA TTTGTCTGAT GGTGTGGCTG TCCAACAGAA
AATAAAACTT GCTCGTGATT ATACTTTTCT TCTTAACAGT GTACACCATC AGAAGGTATT ATTTACTTTC TGTTACATTT
TCCTTTAAAT TTTAAATAGT CGTTTGTTTA TGACTGTGGG TAAGAAGTTT GATTGAGCAG TTATTATTTG TCAAATGAGA
TTTACACGAA CTAGCTCAGT TAAAAGCTTG ATTTGTCAAC CCTCAACAAC TTTAGATAAG GCACTCATAT TAAACGAAAA
TAAGAAACGT GGAAGAGGAT GTGTTTTTTT ACCAGTGATC AACAACACCG AGGCGTGTCT GAGCCAGGAG AAAATGAATG
CAGATATCAT CTTGTTTTGA CTCATTTTAT GTTTGCAATA TATATATTTT CTTGAAAAAC TGCGTTATAT GAGTCTGTCT
CTTTGACCAT GCATCACTAT TGCCAATTTT TGCAGGATTT ACTTTTTTCA TACAATATTG CCGTGGATAG ATCAGATGAA
GTGAAAAGGA CTCTTGGAAA ATCTGCTTCA AGTGTTGGTC TTCAGCTTCC TGAGGTTTAT CAGCCATAAT AATTTGTAGT
TTGATTTTTG CATGCATGGA ACGTGACAGT GTACTGCTGC AGAGAAGGGG CAACTAGTGA AGGTTGCTTT AGTTTTCCTT
CATTATTGGT AATTACCAAC CCAGTAGATT TTACTTTGGC GACTGCTTTT TCTGAATGAA AATTTGTTTT CGTATTATTT
ATCCAGAACT CAAAAACTAG TGAAGAAAAA GAGGAAAGAG ACTCAGAGCT GATGAATAAA TTATATGATT CACACATTGG
TTATTTCTTT TTAATAACGA ACTCTATAGT CTGAGTGTGA TAAATATTTC CCTCTAATAA AAAATTTCTT CCTGGTTTCT
TAA

>Vigan.01G106100.01
AAACCTTCTT TGTTCTCTCC AGTCGAATTG CTTTCTTTTA TACCTCCCCA TCCTCTCATC ATTTAGTTCT AGTTTTTTTA
TTTATTTTCT GCTAATAAGA TTCCTAAATA TTTAAAATAT GGCATCCTGT GCAGGAAAGT AGATTGTGGA TACTGATAGA
AACAAATGAG ATCCGACACG GCTAGTATCT ATCGCCATCT TCTCAAGGCG GTCAAGAAAC ATATTGGGAA TGAAGAGAAC
AAGAGTCATT TTTTAAAATT TGTAACCTCG GAGTTCCGTA ACAACAAAAA TTTGTCTGAT GGTGTGGCTG TCCAACAGAA
AATAAAACTT GCTCGTGATT ATACTTTTCT TCTTAACAGT GTACACCATC AGAAGGATTT ACTTTTTTCA TACAATATTG
CCGTGGATAG ATCAGATGAA GTGAAAAGGA CTCTTGGAAA ATCTGCTTCA AGTGTTGGTC TTCAGCTTCC TGAGGTTTAT
CAGCCATAAT AATTTGTAGT TTGATTTTTG CATGCATGGA ACGTGACAGT GTACTGCTGC AGAGAAGGGG CAACTAGTGA
AGGTTGCTTT AGTTTTCCTT CATTATTGGT AATTACCAAC CCAGTAGATT TTACTTTGGC GACTGCTTTT TCTGAATGAA
AATTTGTTTT CGTATTATTT ATCCAGAACT CAAAAACTAG TGAAGAAAAA GAGGAAAGAG ACTCAGAGCT GATGAATAAA
TTATATGATT CACACATTGG TTATTTCTTT TTAATAACGA ACTCTATAGT CTGAGTGTGA TAAATATTTC CCTCTAATAA
AAAATTTCTT CCTGGTTTCT TAA

>Vigan.01G106100.01
ATGAGATCCG ACACGGCTAG TATCTATCGC CATCTTCTCA AGGCGGTCAA GAAACATATT GGGAATGAAG AGAACAAGAG
TCATTTTTTA AAATTTGTAA CCTCGGAGTT CCGTAACAAC AAAAATTTGT CTGATGGTGT GGCTGTCCAA CAGAAAATAA
AACTTGCTCG TGATTATACT TTTCTTCTTA ACAGTGTACA CCATCAGAAG GATTTACTTT TTTCATACAA TATTGCCGTG
GATAGATCAG ATGAAGTGAA AAGGACTCTT GGAAAATCTG CTTCAAGTGT TGGTCTTCAG CTTCCTGAGG TTTATCAGCC
ATAA

>Vigan.01G106100.01
MRSDTASIYR HLLKAVKKHI GNEENKSHFL KFVTSEFRNN KNLSDGVAVQ QKIKLARDYT FLLNSVHHQK DLLFSYNIAV
DRSDEVKRTL GKSASSVGLQ LPEVYQP*