GBrowse Details

Vigan.01G101100.01

Basic Information:
Name: Vigan.01G101100.01
Multiple alignment
Variant Information
Position: Chr01:8560261..8564360 (- strand)
Length: 4100
Functional Information:
Description: Similar to uncharacterized protein. [C6TNQ7, Glycine max]
GO: Molecular Function: nucleic acid binding (GO:0003676)
Molecular Function: metal ion binding (GO:0046872)
InterPro: Zinc finger, C2H2 (IPR007087)
Zinc finger C2H2-type/integrase DNA-binding domain (IPR013087)
Zinc finger, C2H2-like (IPR015880)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:95.74,47.49,13.36,24.85,18.17,12.13,13.39,15.73
Arabidopsis thaliana homolog: AT4G06634.1
Automatic updates:
Name: BT053011 NCBI(nuccore)
Organism: Medicago truncatula
Description: Medicago truncatula clone MTYFL_FM_FN_FO1G-E-11 unknown mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:8560261..8560492 (- strand)
Length: 232
Type: three_prime_UTR
Position: Chr01:8560493..8561032 (- strand)
Length: 540
Type: CDS
Position: Chr01:8561278..8561421 (- strand)
Length: 144
Type: CDS
Position: Chr01:8562030..8562119 (- strand)
Length: 90
Type: CDS
Position: Chr01:8562348..8562547 (- strand)
Length: 200
Type: CDS
Position: Chr01:8563485..8563543 (- strand)
Length: 59
Type: CDS
Position: Chr01:8564108..8564193 (- strand)
Length: 86
Type: CDS
Position: Chr01:8564194..8564360 (- strand)
Length: 167
Type: five_prime_UTR

>Vigan.01G101100.01 class=Sequence position=Chr01:8560261..8564360 (- strand)
AATGTCTTCT CCCTTTAAGC CTGCGATAAC TCCTAGTGAA GAGGAAAAGC AAGAGAGGAA CCCATTATTG AGAAAATGCG
TCCCTGAAAA CAGCAAACCC TAAATCGAGA TAAAGGTTCG AAGAATTTGC GAAACGAAGT GAGTTTTGGC GCCGCAGTGA
ATCGTAGATG GAGATTCACT ACAGTAGCAG CTACTTCGAA AGACGTCCCA TTCTCAAGTC CAAGGCTCCC GCAGTTAAAT
GGGTTAAAGA ATGGTATAGA TGAATTTGTC GTCTCTCATG ATTTCAATTT ACATATTATC ATTTAAGGTT TTCAATTGTA
TTATTTGTGG TGTGGTAGCT ATGAGTGTGT TGGGGAGATA TAAGAGAGGG ATTTAACTCA ATTCACCAGG CTCAGTTTCT
TCCTTGATTA CTGTGTTTAT TGAATTGATT TTGGGAAAGT GGTTTGTTTT GATGTTTGAT TGCGGGTTTG ATGGTTTTAG
ACGGAGTGGA GGAGTTTGGA GGGGAAAGAG CAGAGAGGCG ATTTTTCACG TCAAATTGTT TATTCTCCTT ATTTGAAAAT
ATATTTTGAA TGAGTGGGAT TGTAATTGGG GGTTATCATG AGACCTTGAG ACCGTTCTCG TTGTTTTTAC AAATGTTTTA
TGATTGTCTC GGTTTAGGAA TGTGAATTAA AGGAGGGAAC GTGTTTAACG TTAGTTTTTC CATTTAGTGT TCAGAGGGAG
AGACCAATTA TAATATATTT GTCATTGGTT TGTTTCTTCC TTTTCCTACC TCTTAGGTAA AAATTTATAC TAATAATCTG
ATCATTGTGG ATGCCAGGGT TCCCCAAGAT CTTGTAACAA CTGGAGGAAA ATGCATGCTC TTAAAATGGG TAACAGGTTG
GTCTTTTTTC CCTATTTAGC TAGCTTACAT CTTTGTTCAA TCCTGCTTCC ATTTGGCTAT ATTTCTCTGC ATCTTTGCAT
TTTTTTAAAT GATATTACTG TTTTGTTTAG CTTCTACATA CAGTTTTGTT ATGATACAAA ACTTGGTGGA AAATAAGGGG
AAGATTTTAA GATGATTTAA CCTAATATTT TTTGTTGAGG TGAGATAATG AGTTGCTGTA GAGAGATGCA AAAACAAAGG
GAAGCTGAAT AGATAGAACG GGAGTGTTAG AAGTTTACCA ATCGCCATTG AAGCGGGAAT AACTAAATAC CTATTGGATT
GGAATTGAAT AACAAACAAG ACTGTATTAA ATTGTTTTCT ATAGAACCAA CCACCCAAAA AAGGTTAATG AAATTGGTTA
GAATATTTTT TTTTCCTACT CTCACTCTAA GCTGAAATGG ATTACATCAC ATCTTTGATT GGGCACAAGA ATCGTATCCA
CAACAGAACA TACTGGGTGT TAGTTATAAA TAAAGACATT GTGCTACACA ATGAACTGTT AAATGCTCAT TTGAGAGCTA
TTCTTTCCAG GTATCATGCA TCGGGTCAAT TAGGGCTTCT TCGAGTCCAG GATAGGATAG AAGACTCTTG ATAAAAAGCA
AATTTGTTAC AAAGGATTTT ATGAAGAGAA ATTTATATAA CCAGATCTGC AAGTTGGTGT CAAATGTGTA CATTTCCCTA
TTGGTTAATT GCTTGCAATT TTGAACATTG AACACAATGG TTCTTATTCT TAATGGCTTT ACCTTTTTAT TTTCGTTTCA
AAGTTTTAAT ATAATTTTTA ATCCTTGATT CTGACTCAAA AAACAATGCA GTTATAAAAC ATGCAATAAT ATCTTATGAT
GTTATTTTAT CATTTTTTGT ACCTTACATT TCTCTCTGTT TTACTTTTCT AAGAGGATAC CTTGAAGACC TTAAAAGAAA
AGACAACAGA GCCAACAATG CCTGAGCCAG AACCAGAGCC AACTACTGAA GTACTTTTTC TTTGTAGCTA TGATGGATGT
GGAAAGACAT TCATAGATGC TGGTGCATTG AGGAAGCATT CTCACATCCA TGGAGAGAGG CAATATGTCT GTCACTACGA
GGGGTGTGGA AAGGTAGTGA TTGTGTTACT TACAGTTTAA ACCCATGCAC ATGTATTGCC ATGATTTGAA ATAATTTATA
TTACTGCATC CTGTAGAAAC AGATCCAACT TCACTTTGTT TTACCATTCT CTTGTCCGAT GATTGGCCTA ATAGCCTAAA
AGCTTTAGTG TGAAGCATTG TGTTTAATGC TCTGGAGAAG AAAAAACTCT AATTAGCAGT ACTATTTTGT TTACATTGCA
GAAATTTCTG GATAGCTCAA AATTGAAAAG ACATTTTCTC ATTCATACAG GGGAGAGGGA TTTTGTGTGT CCTCATGAAG
GTTGTGGTAA GGTGATGAAT CGGTCCAATT AATGGTTTGT TGTTTTCTAT GATGGCTTCC TTTTCCTAGT TTGTACTGCA
TGTTCTGTGT ATTATTCCAT ATGGTTTTAC ACATTTGGAT CTGTGGCATA TTGCCAATTA GCCTAATGGG ATGCCATCTA
TGGCATTGGA GTGTTTTCCT CATAGGAAAT TTGAAATGAC CATATATTTG TTTATAGTTG ACTTTATTGC AACTAAATCA
TTGTTAACAT TTTCATCACA CTAAATATTA TCTTTCCACG ATTTTGAACC TTTCACCTTA ACAAGATGAA TCTGTCCTGA
TCTCTGCTGT TTATCTCTCT CGACAGACAC ACACATATAT TAAGTATGTA CGTGTATGAA AATGTAGACA TTATTTCAAC
GTTCTCTTGA GTATAATTGC CAGTGGACCT TCTTTAAAGC TAAACTAATT TCTTCCGAGT GGATTAGATT ACTTTGTATG
ATATCATCTT CAATTATTTT CTACTATTTC ATAATCTCCA GTACTGTTTA TCTTTTGCTT TGGAGTTTTG GATAATGTAT
TACGATTGTA TGCTTTTTAT CACAACATCT TAGTCACCAA ATTCGTCTAT CTGCTGCAGG CCTTTTCCTT GGATTTCAAC
TTAAGGTCTC ACATGAAAAC ACATTCCCAA GAGAACTATC ATATCTGCCC GTACCCAGAT TGTGGAAAGA GATATGCTCA
CGAATACAAA CTAAAGAATC ACATTGCATC CCATCATGAA AAGGTTGGTA GATTGCTATT GTTTGACCAT AGTTTATTAA
TATCACATGC TTCATGTTAT CATGTAAAAA TCTCTCGTTT TAATTCATAT ACGTATGGTT TTGGTGTAAT TGTTTCGTTT
GGTATGTTAA TAGATGCCTC TAATCCGAAA CTGATGGATT GCTATAGTAT ATGCGATTCA CAAAATTTTG AAACTATTAA
CATTTCTTGA ACAGTCTTCT AATTTGCAAT TTCAACCTTA TCTTACAGAA TGCATCAGTG GATGTGACAA AGTACACTAC
TCCACCTTCA GAGAAGCAAA CAAAAACTGC TAAATCGTCT GGAGGGGCAT ATGGTTCTGC ATCATCCGAC CGTCCCTATG
CATGTCCATA TGATGGGTGT GAAAAGGCAT ATATCCATGA ATACAAGCTT AGACTTCATT TGAAGAGGGA ACACCCGGGG
ATGATGCCCG ATGAAAATGC TGAGCATGCT CAGGCTAATA ATGTTGACAA TGAAATGGAT GAAGCAAGTG ACCAAGATGC
CTATATCGCG AAACGGTCAA ATGGTAAAAT TCAGAAACAG AGTAGGCCTA AACCAAGTCT TAAGTTGCCT CCTTCCAAAA
TTGCAAAACG CAAAGTGTCC ACTCCCACTT TAACTGTAAA TAAAAATTCT TGGCCCGTGA AAGATGAACC TTTTGATGAA
GAAGATAGTG AGGAAACAGA AGAAGATCGT GACAATGTTG AAGATGGTTG GAGATATACT GGAGGAAACA ATGAAGATGA
CGATGAAGAA ACAGAATATG AAGACTGAAA ATCAGTTATG GCAGCCTCTA TGAAACTTGC TTGCGTAGAG AAATATATTT
TCTTTTTCTT CTACAAAAAA AAAATTCAGT TGTCTCTTTT TTATTTGGCT AAGGAAATGG TGTTTTGTGA AACTGAGTTG
GCTATTTACA TGCATTAGGA AGGACTCCTA ACTATCTCTA CCCGTCGCAC GGGTTGTTTT TTTAAATAAT TTTTATATCA
TAAGATTATA TTTTAATTAA 

>Vigan.01G101100.01
AATGTCTTCT CCCTTTAAGC CTGCGATAAC TCCTAGTGAA GAGGAAAAGC AAGAGAGGAA CCCATTATTG AGAAAATGCG
TCCCTGAAAA CAGCAAACCC TAAATCGAGA TAAAGGTTCG AAGAATTTGC GAAACGAAGT GAGTTTTGGC GCCGCAGTGA
ATCGTAGATG GAGATTCACT ACAGTAGCAG CTACTTCGAA AGACGTCCCA TTCTCAAGTC CAAGGCTCCC GCAGTTAAAT
GGGTTAAAGA ATGGGTTCCC CAAGATCTTG TAACAACTGG AGGAAAATGC ATGCTCTTAA AATGGGTAAC AGAGGATACC
TTGAAGACCT TAAAAGAAAA GACAACAGAG CCAACAATGC CTGAGCCAGA ACCAGAGCCA ACTACTGAAG TACTTTTTCT
TTGTAGCTAT GATGGATGTG GAAAGACATT CATAGATGCT GGTGCATTGA GGAAGCATTC TCACATCCAT GGAGAGAGGC
AATATGTCTG TCACTACGAG GGGTGTGGAA AGAAATTTCT GGATAGCTCA AAATTGAAAA GACATTTTCT CATTCATACA
GGGGAGAGGG ATTTTGTGTG TCCTCATGAA GGTTGTGGTA AGGCCTTTTC CTTGGATTTC AACTTAAGGT CTCACATGAA
AACACATTCC CAAGAGAACT ATCATATCTG CCCGTACCCA GATTGTGGAA AGAGATATGC TCACGAATAC AAACTAAAGA
ATCACATTGC ATCCCATCAT GAAAAGAATG CATCAGTGGA TGTGACAAAG TACACTACTC CACCTTCAGA GAAGCAAACA
AAAACTGCTA AATCGTCTGG AGGGGCATAT GGTTCTGCAT CATCCGACCG TCCCTATGCA TGTCCATATG ATGGGTGTGA
AAAGGCATAT ATCCATGAAT ACAAGCTTAG ACTTCATTTG AAGAGGGAAC ACCCGGGGAT GATGCCCGAT GAAAATGCTG
AGCATGCTCA GGCTAATAAT GTTGACAATG AAATGGATGA AGCAAGTGAC CAAGATGCCT ATATCGCGAA ACGGTCAAAT
GGTAAAATTC AGAAACAGAG TAGGCCTAAA CCAAGTCTTA AGTTGCCTCC TTCCAAAATT GCAAAACGCA AAGTGTCCAC
TCCCACTTTA ACTGTAAATA AAAATTCTTG GCCCGTGAAA GATGAACCTT TTGATGAAGA AGATAGTGAG GAAACAGAAG
AAGATCGTGA CAATGTTGAA GATGGTTGGA GATATACTGG AGGAAACAAT GAAGATGACG ATGAAGAAAC AGAATATGAA
GACTGAAAAT CAGTTATGGC AGCCTCTATG AAACTTGCTT GCGTAGAGAA ATATATTTTC TTTTTCTTCT ACAAAAAAAA
AATTCAGTTG TCTCTTTTTT ATTTGGCTAA GGAAATGGTG TTTTGTGAAA CTGAGTTGGC TATTTACATG CATTAGGAAG
GACTCCTAAC TATCTCTACC CGTCGCACGG GTTGTTTTTT TAAATAATTT TTATATCATA AGATTATATT TTAATTAA

>Vigan.01G101100.01
ATGGAGATTC ACTACAGTAG CAGCTACTTC GAAAGACGTC CCATTCTCAA GTCCAAGGCT CCCGCAGTTA AATGGGTTAA
AGAATGGGTT CCCCAAGATC TTGTAACAAC TGGAGGAAAA TGCATGCTCT TAAAATGGGT AACAGAGGAT ACCTTGAAGA
CCTTAAAAGA AAAGACAACA GAGCCAACAA TGCCTGAGCC AGAACCAGAG CCAACTACTG AAGTACTTTT TCTTTGTAGC
TATGATGGAT GTGGAAAGAC ATTCATAGAT GCTGGTGCAT TGAGGAAGCA TTCTCACATC CATGGAGAGA GGCAATATGT
CTGTCACTAC GAGGGGTGTG GAAAGAAATT TCTGGATAGC TCAAAATTGA AAAGACATTT TCTCATTCAT ACAGGGGAGA
GGGATTTTGT GTGTCCTCAT GAAGGTTGTG GTAAGGCCTT TTCCTTGGAT TTCAACTTAA GGTCTCACAT GAAAACACAT
TCCCAAGAGA ACTATCATAT CTGCCCGTAC CCAGATTGTG GAAAGAGATA TGCTCACGAA TACAAACTAA AGAATCACAT
TGCATCCCAT CATGAAAAGA ATGCATCAGT GGATGTGACA AAGTACACTA CTCCACCTTC AGAGAAGCAA ACAAAAACTG
CTAAATCGTC TGGAGGGGCA TATGGTTCTG CATCATCCGA CCGTCCCTAT GCATGTCCAT ATGATGGGTG TGAAAAGGCA
TATATCCATG AATACAAGCT TAGACTTCAT TTGAAGAGGG AACACCCGGG GATGATGCCC GATGAAAATG CTGAGCATGC
TCAGGCTAAT AATGTTGACA ATGAAATGGA TGAAGCAAGT GACCAAGATG CCTATATCGC GAAACGGTCA AATGGTAAAA
TTCAGAAACA GAGTAGGCCT AAACCAAGTC TTAAGTTGCC TCCTTCCAAA ATTGCAAAAC GCAAAGTGTC CACTCCCACT
TTAACTGTAA ATAAAAATTC TTGGCCCGTG AAAGATGAAC CTTTTGATGA AGAAGATAGT GAGGAAACAG AAGAAGATCG
TGACAATGTT GAAGATGGTT GGAGATATAC TGGAGGAAAC AATGAAGATG ACGATGAAGA AACAGAATAT GAAGACTGA

>Vigan.01G101100.01
MEIHYSSSYF ERRPILKSKA PAVKWVKEWV PQDLVTTGGK CMLLKWVTED TLKTLKEKTT EPTMPEPEPE PTTEVLFLCS
YDGCGKTFID AGALRKHSHI HGERQYVCHY EGCGKKFLDS SKLKRHFLIH TGERDFVCPH EGCGKAFSLD FNLRSHMKTH
SQENYHICPY PDCGKRYAHE YKLKNHIASH HEKNASVDVT KYTTPPSEKQ TKTAKSSGGA YGSASSDRPY ACPYDGCEKA
YIHEYKLRLH LKREHPGMMP DENAEHAQAN NVDNEMDEAS DQDAYIAKRS NGKIQKQSRP KPSLKLPPSK IAKRKVSTPT
LTVNKNSWPV KDEPFDEEDS EETEEDRDNV EDGWRYTGGN NEDDDEETEY ED*