GBrowse Details

Vigan.01G092000.01

Basic Information:
Name: Vigan.01G092000.01
Multiple alignment
Variant Information
Position: Chr01:7808593..7810097 (- strand)
Length: 1505
Functional Information:
Description: Similar to Uncharacterized protein. [I1KSX0, Glycine max]
GO: Biological Process: translational elongation (GO:0006414)
Cellular Component: intracellular (GO:0005622)
Cellular Component: ribosome (GO:0005840)
Molecular Function: structural constituent of ribosome (GO:0003735)
InterPro: Ribosomal protein L10/L12 (IPR001813)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:356.84,588.58,248.48,119.47,455.53,702.87,198.97,136.62
Arabidopsis thaliana homolog: AT4G25890.1
Automatic updates:
Name: NM_001248408 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527385 (LOC100527385), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:7808593..7808817 (- strand)
Length: 225
Type: three_prime_UTR
Position: Chr01:7808818..7808979 (- strand)
Length: 162
Type: CDS
Position: Chr01:7809778..7809975 (- strand)
Length: 198
Type: CDS
Position: Chr01:7809976..7810097 (- strand)
Length: 122
Type: five_prime_UTR

>Vigan.01G092000.01 class=Sequence position=Chr01:7808593..7810097 (- strand)
ACGGCATTAG GGTTCCGAAA CCTCACTGGT ACATAAACGA TTCCTCTCAC ACAAATTGCT GTCACTGTAA TTTGCTCTTT
GCGAGTCTTT AGTTTCGAAT TAGGGTTTCG CACAGAGTCG CCATGGGAGT CTTCACATTT ATCGTACGCA ACTCCGGCGG
CGAATGGACA GCCAAACAAC ATTCCGGCGA TCTCGAGTCC TCCGCCGACT CCTCCTACGA ACTCCAACGG AAGCTTGTCC
AAGCCGCTCT CGCCGTTGAC TCCTCCGGCG GCGTTCAGTC CTCTTACTCT CCTGTTTCCC CTTCCTCTGC CATATTTCAG
GTACATCCTT AAGATCTCTG ACGATTTCGG CTTTTTGATT CGGAAGCGAA ACTTTACGTT TACATTTGCT CTGCCTTTAT
CTTTTCCTTT TAAAATTTCT TACCTCTATT TAATAATTTA TTTATTGATT TTAATTGGAT TTGCTAGATT CCGTATTGTA
TTGTAATATA TGTGTTATTG TATAGCTTGC TTCGAAATGA TGGATAGGTT TTTGTCATGC TATTTTCTTT TCTCTGAAGA
ATGCTGGTTC ATTTCTTTTG TCTGAGATTT TGCTGAGGAA TGAATAGTTT GACTGAATCT TTTCGCTTTA TGAAGCTTCA
TCCTTATTCA TTTCTAAAAG GATAAATTTG CGCGCTTGTG CTTTTCGGTG ATGGAACTTG GATGCAATTC TTCAATTGAA
ATTCGAGTTC AAATTAATAG TCAGTGTGGA TCCATTATGC AAGATATTAT CATGCATATT ATGGAAGTGA GTTTCTGAGA
CCATGTTTGA ACTGGCTTTT GTATTAAAAA TGCTTTAAAC ATGGAAATTT ATGAAGAAAA TTGATTTTTC CATGTACCAT
ATTTTAAAAA TAAAAAATTA GGGAGACTAT GGGAAAGTAA ATACAATTAG ATCTTATTCA AATTAAACAA TAGTATCAAA
TGCACTTATG CACCTCCATC TAAGTTGGTT GACCAATACA CATGCTATTG GTGGTGATAG ATGGTGATGG TTTTTCTGCT
TTGGTGCTTT ATCCTTTGGA TTCAAGCATT TCGTGGTGGG TCAAAAATGA GGTTATTTTT ATTGATTGTT TTGTTCAGGT
AATAGTGGGT GGTGCAGTAT TTGTTGGAGG TGGTGCGGTT GCAGCTGCAC CTGCCGGAAG TGCTGCCCCA GCTGCTGATG
CTGCCCCGGC CGCTGAGAAG AAGGAAGAAA AGGTGGAGGA AGAGTCCGAC GAGGATATGG GTTTGGGTCT GTTTGATTAG
AGTTCTGTTT TTTGAGTTTT GATGGAAGAA ATGTTTTAGT TTTAATCCTA TAAATTATAT TTGTGTATTG CCTTTCGCTA
TTTAATGCTA CATTCAACTC CATCAGATAG ACTTTTTGTT TTTCTGTGAT GTGACCTAAA TCGTTCATCT GTATCGGGTT
TTGCTAATTA TTTCCTTTTA AAAAATGCTC GCTCTTAAAT TTAATAGAGT GCTACGTTAC CTTCA

>Vigan.01G092000.01
ACGGCATTAG GGTTCCGAAA CCTCACTGGT ACATAAACGA TTCCTCTCAC ACAAATTGCT GTCACTGTAA TTTGCTCTTT
GCGAGTCTTT AGTTTCGAAT TAGGGTTTCG CACAGAGTCG CCATGGGAGT CTTCACATTT ATCGTACGCA ACTCCGGCGG
CGAATGGACA GCCAAACAAC ATTCCGGCGA TCTCGAGTCC TCCGCCGACT CCTCCTACGA ACTCCAACGG AAGCTTGTCC
AAGCCGCTCT CGCCGTTGAC TCCTCCGGCG GCGTTCAGTC CTCTTACTCT CCTGTTTCCC CTTCCTCTGC CATATTTCAG
GTAATAGTGG GTGGTGCAGT ATTTGTTGGA GGTGGTGCGG TTGCAGCTGC ACCTGCCGGA AGTGCTGCCC CAGCTGCTGA
TGCTGCCCCG GCCGCTGAGA AGAAGGAAGA AAAGGTGGAG GAAGAGTCCG ACGAGGATAT GGGTTTGGGT CTGTTTGATT
AGAGTTCTGT TTTTTGAGTT TTGATGGAAG AAATGTTTTA GTTTTAATCC TATAAATTAT ATTTGTGTAT TGCCTTTCGC
TATTTAATGC TACATTCAAC TCCATCAGAT AGACTTTTTG TTTTTCTGTG ATGTGACCTA AATCGTTCAT CTGTATCGGG
TTTTGCTAAT TATTTCCTTT TAAAAAATGC TCGCTCTTAA ATTTAATAGA GTGCTACGTT ACCTTCA

>Vigan.01G092000.01
ATGGGAGTCT TCACATTTAT CGTACGCAAC TCCGGCGGCG AATGGACAGC CAAACAACAT TCCGGCGATC TCGAGTCCTC
CGCCGACTCC TCCTACGAAC TCCAACGGAA GCTTGTCCAA GCCGCTCTCG CCGTTGACTC CTCCGGCGGC GTTCAGTCCT
CTTACTCTCC TGTTTCCCCT TCCTCTGCCA TATTTCAGGT AATAGTGGGT GGTGCAGTAT TTGTTGGAGG TGGTGCGGTT
GCAGCTGCAC CTGCCGGAAG TGCTGCCCCA GCTGCTGATG CTGCCCCGGC CGCTGAGAAG AAGGAAGAAA AGGTGGAGGA
AGAGTCCGAC GAGGATATGG GTTTGGGTCT GTTTGATTAG 

>Vigan.01G092000.01
MGVFTFIVRN SGGEWTAKQH SGDLESSADS SYELQRKLVQ AALAVDSSGG VQSSYSPVSP SSAIFQVIVG GAVFVGGGAV
AAAPAGSAAP AADAAPAAEK KEEKVEEESD EDMGLGLFD*