GBrowse Details

Vigan.01G090800.01

Basic Information:
Name: Vigan.01G090800.01
Multiple alignment
Variant Information
Position: Chr01:7695922..7698741 (+ strand)
Length: 2820
Functional Information:
Description: Similar to Uncharacterized protein. [I1KSX8, Glycine max]
GO: Biological Process: protein N-linked glycosylation (GO:0006487)
Cellular Component: membrane (GO:0016020)
Molecular Function: beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity (GO:0003830)
InterPro: Glycosyl transferase, family 17 (IPR006813)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:7.66,4.86,9.47,11.01,10.51,9.75,15.40,14.02
Arabidopsis thaliana homolog: AT1G12990.1, AT1G67880.1, AT3G01620.1, AT3G27540.1, AT5G14480.1
Automatic updates:
Name: NM_001317673 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max putative beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase (LOC100805850), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:7695922..7696334 (+ strand)
Length: 413
Type: five_prime_UTR
Position: Chr01:7696335..7696415 (+ strand)
Length: 81
Type: CDS
Position: Chr01:7697153..7698247 (+ strand)
Length: 1095
Type: CDS
Position: Chr01:7698248..7698741 (+ strand)
Length: 494
Type: three_prime_UTR

>Vigan.01G090800.01 class=Sequence position=Chr01:7695922..7698741 (+ strand)
CAGAACATAA GAACGCGTGG AGAAGAGTAG GGAGTGGGAG ACTGAGTAAA AGCATAGTCT GGGTGAAGAC TTTATGTTAT
AAATAAAAAT AGGGGAGAAA ATAAGAATAG CATAGAGAAA GGGGAATCTC AATCAATCAG GTAACGGGAA CTTTTTTATC
AGTTCCGTTG GAGAGCAAGC TTAGCTGTGT GGAGACGACA ACTACCACCC ATTTCCAAAG TTACAGAGAG GACATTACCT
CCTTGTTTCT TCCGTCCTCG ACTCTCTTCC TCCCTATACC CAAACTATAA ACCTCGGATT TTCCTTCCTC TGTCTTTTGC
TCCCTTCACA CGCGCTTTTT TCCTTATACG CTAAGATTTC ACACGCCGAT CTGCTTTTCT TTTCATTCAT TCTTTCATTC
CTTCGACGCC GAAATGTGGT GGATGATGGG CGAGGCTGGA GGGAATTACT CTTCTAAGAA GACCGATGAT CTGTGCAGCA
ATGTTTGTGG CCAGGTGTGT TGTGGAAAAT TATTATTTTT TTTTATTTTT TTAAAAATTA AATGTTGCTT TTTCCGTTTG
CGGTGTGGAT AAAAGTTTTT CTTACTTGTC GCCTATTGGG TAACTCAAAT TCAATGGGTT TTCAATGTTG ATGTGGATTG
CTGTGTAATC TATATCGGTG GATTGACTCA GAAATTTTCT CCTAGATTTG CTCTTTTTCT GTTGTTTGTT TTTATTTTTC
TTAAAAGGAA TTTGGTGTGC GCGAGAGATT TTTTCGTGAT CTGAACTTAG GTATCCGATA AAGCTGCGTT TCGGATGTTT
TAGCGGTTGT TTTTTTTTTT TTCTAATTTT AGCAAACGTT CGAAACTATT TTTTGGGATT GTAAGTGAAC GCCAGGGAAG
ACACCCTTTC CCTCTTCTTT TTTCTTCCTA TTTTTGGAAG ATTTTTCGGT TTGGAGGGAA AGGGTTTTCG TTTCTGTTGT
AGCATAATTG GGTTTGGACG GGTGCAAGGT TTCTCTCACG AACCGCTTGC ATTTGGGATT TTCCGGGGCA TGATTCGTAT
CGCTACATGA TTAAGCTCTG GTTGTGATTG CAATCGGTGA TTAGAGTTGT ATGATGCTTG AAATTTTGCA CCGATAGAGA
GCAGCATTGG AATTTTTATA AGATTGTATG ATTCTGCATC ACATGTTTAT TTCATGATTT TTCATTCTCG AAGGTGTTTT
TTCTTATATG TTTTGTTCCT TAATTATGCA GGAATCAAGT CAAGTTTCAA GCATGTCAAG GATTCGTTGC ATTCTGCGTG
GTTTGGATGT TAAAACCTAC ATCTTCATGT TTGCCGTTGT CCCAATGTGC ATCTTTGGAT TCTATATACA TGGGCAAAAG
ATCTCTTACT TTCTGAGGCC CCTATGGGAA AAAGCACCAA AGCCTTTCAA TGTCATCCCT CATTACTATA ACGAAAATGT
CACCATGGAG AATCTCTGCA GACTTCATGG CTGGGGAGTC CGGGAATATC CTAGACGTGT TTATGATGCT GTGTTGTTTA
GTAATGAGTT GGAAATACTA ACCTTGCGAT GGAGAGAACT GTACCCTTAC ATAACTGATT TTGTTCTCCT TGAATCAAAT
TCTACGTTTA CCGGATTGCC CAAACCTCTG GTTTTCCAAA GCAATAGGGA GCAGTTCAAA TTTATCGAGC CACGATTAAC
TTATGGTACT ATTGGTGGGA GATTTAAGAA GGGAGAAAAC CCATTTGTTG AGGAGGCATA TCAGCGTGTA GCATTGGACC
AGCTCCTCAA GATAGCTGGT ATTAGTGATG ATGACTTGTT GATTATGTCT GATGTGGATG AGATACCAAG CGCTCACACT
ATTAATCTCC TGAGGTGGTG TGATGAAGTA CCCTCAATCC TTCATCTGCA GCTGAAAAAC TATCTCTATT CATTTGAATT
TCGCGTTGAT GATAAGAGTT GGAGGGCTTC AATTCACAGG TATCAGACTG GGAAGACAAG GTATGCACAT TATCGCCAAT
CTGATGACAT GCTGGCCGAT GCTGGCTGGC ATTGTAGCTT TTGCTTCCGT CGGATCAGTG ATTTCATTTT TAAGATGAAA
GCCTACAGCC ACTATGATAG AGTCAGATTC TCTCACTATT TAAATCCTGA TAGAATTCAG AAGGTAATAT GCAAAGGTGC
TGATTTGTTT GATATGCTGC CGGAGGAGTA CACTTTCAAG GATATCATTG GCAAAATGGG ACCAATACCA CATTCCTATT
CTGCAGTTCA TCTTCCTGCT TTTCTTCTGG AAAATGCTGA GAAGTATAAA TTCCTTTTGC CTGGAAATTG CAAAAGAGAA
AAATGATTTT GGAAAGTCAT TTCTGATACT GGCTTGTTCT GAGCTTGTAG CTTGTACAGC TCAAGTGACT CTCCTCTGGG
TTTTTAACTG TGGTTGTGAT GATTGTGTGT CAGTTTCACT CATACAGCTC TATCTTTGTC CAGTGAGATA TTCTTTGGGA
ATTCATTCAT TTCGGATAAA TTCTTTGATC TAGAGGGAAT TCTGTATATA GTTTAGACCT GGACTTCATT CGAGGGGAGC
AGCAGCATTT CTACCTTTGA GCGACTGTTT GAGAAGAGGC TTGTCTTCAT GAACCGTGTT TATCATTAAT GTGATTGATC
CCCAATACAC GAAATTAGTC TAAAATCCCC CACTTTTTCC TGTATGGGAA GTTTTGTTTT GCAGACCAAT TATTTTCGTA
TTATTCTTTG TTTATGCTAA TTATCTAATC CGATTGGTTG GTCTACTATA TCATCACAAT ACTGACTCAG TTCTTTGCAT
TATATAAATA TAGTCTGCTG 

>Vigan.01G090800.01
CAGAACATAA GAACGCGTGG AGAAGAGTAG GGAGTGGGAG ACTGAGTAAA AGCATAGTCT GGGTGAAGAC TTTATGTTAT
AAATAAAAAT AGGGGAGAAA ATAAGAATAG CATAGAGAAA GGGGAATCTC AATCAATCAG GTAACGGGAA CTTTTTTATC
AGTTCCGTTG GAGAGCAAGC TTAGCTGTGT GGAGACGACA ACTACCACCC ATTTCCAAAG TTACAGAGAG GACATTACCT
CCTTGTTTCT TCCGTCCTCG ACTCTCTTCC TCCCTATACC CAAACTATAA ACCTCGGATT TTCCTTCCTC TGTCTTTTGC
TCCCTTCACA CGCGCTTTTT TCCTTATACG CTAAGATTTC ACACGCCGAT CTGCTTTTCT TTTCATTCAT TCTTTCATTC
CTTCGACGCC GAAATGTGGT GGATGATGGG CGAGGCTGGA GGGAATTACT CTTCTAAGAA GACCGATGAT CTGTGCAGCA
ATGTTTGTGG CCAGGAATCA AGTCAAGTTT CAAGCATGTC AAGGATTCGT TGCATTCTGC GTGGTTTGGA TGTTAAAACC
TACATCTTCA TGTTTGCCGT TGTCCCAATG TGCATCTTTG GATTCTATAT ACATGGGCAA AAGATCTCTT ACTTTCTGAG
GCCCCTATGG GAAAAAGCAC CAAAGCCTTT CAATGTCATC CCTCATTACT ATAACGAAAA TGTCACCATG GAGAATCTCT
GCAGACTTCA TGGCTGGGGA GTCCGGGAAT ATCCTAGACG TGTTTATGAT GCTGTGTTGT TTAGTAATGA GTTGGAAATA
CTAACCTTGC GATGGAGAGA ACTGTACCCT TACATAACTG ATTTTGTTCT CCTTGAATCA AATTCTACGT TTACCGGATT
GCCCAAACCT CTGGTTTTCC AAAGCAATAG GGAGCAGTTC AAATTTATCG AGCCACGATT AACTTATGGT ACTATTGGTG
GGAGATTTAA GAAGGGAGAA AACCCATTTG TTGAGGAGGC ATATCAGCGT GTAGCATTGG ACCAGCTCCT CAAGATAGCT
GGTATTAGTG ATGATGACTT GTTGATTATG TCTGATGTGG ATGAGATACC AAGCGCTCAC ACTATTAATC TCCTGAGGTG
GTGTGATGAA GTACCCTCAA TCCTTCATCT GCAGCTGAAA AACTATCTCT ATTCATTTGA ATTTCGCGTT GATGATAAGA
GTTGGAGGGC TTCAATTCAC AGGTATCAGA CTGGGAAGAC AAGGTATGCA CATTATCGCC AATCTGATGA CATGCTGGCC
GATGCTGGCT GGCATTGTAG CTTTTGCTTC CGTCGGATCA GTGATTTCAT TTTTAAGATG AAAGCCTACA GCCACTATGA
TAGAGTCAGA TTCTCTCACT ATTTAAATCC TGATAGAATT CAGAAGGTAA TATGCAAAGG TGCTGATTTG TTTGATATGC
TGCCGGAGGA GTACACTTTC AAGGATATCA TTGGCAAAAT GGGACCAATA CCACATTCCT ATTCTGCAGT TCATCTTCCT
GCTTTTCTTC TGGAAAATGC TGAGAAGTAT AAATTCCTTT TGCCTGGAAA TTGCAAAAGA GAAAAATGAT TTTGGAAAGT
CATTTCTGAT ACTGGCTTGT TCTGAGCTTG TAGCTTGTAC AGCTCAAGTG ACTCTCCTCT GGGTTTTTAA CTGTGGTTGT
GATGATTGTG TGTCAGTTTC ACTCATACAG CTCTATCTTT GTCCAGTGAG ATATTCTTTG GGAATTCATT CATTTCGGAT
AAATTCTTTG ATCTAGAGGG AATTCTGTAT ATAGTTTAGA CCTGGACTTC ATTCGAGGGG AGCAGCAGCA TTTCTACCTT
TGAGCGACTG TTTGAGAAGA GGCTTGTCTT CATGAACCGT GTTTATCATT AATGTGATTG ATCCCCAATA CACGAAATTA
GTCTAAAATC CCCCACTTTT TCCTGTATGG GAAGTTTTGT TTTGCAGACC AATTATTTTC GTATTATTCT TTGTTTATGC
TAATTATCTA ATCCGATTGG TTGGTCTACT ATATCATCAC AATACTGACT CAGTTCTTTG CATTATATAA ATATAGTCTG
CTG

>Vigan.01G090800.01
ATGTGGTGGA TGATGGGCGA GGCTGGAGGG AATTACTCTT CTAAGAAGAC CGATGATCTG TGCAGCAATG TTTGTGGCCA
GGAATCAAGT CAAGTTTCAA GCATGTCAAG GATTCGTTGC ATTCTGCGTG GTTTGGATGT TAAAACCTAC ATCTTCATGT
TTGCCGTTGT CCCAATGTGC ATCTTTGGAT TCTATATACA TGGGCAAAAG ATCTCTTACT TTCTGAGGCC CCTATGGGAA
AAAGCACCAA AGCCTTTCAA TGTCATCCCT CATTACTATA ACGAAAATGT CACCATGGAG AATCTCTGCA GACTTCATGG
CTGGGGAGTC CGGGAATATC CTAGACGTGT TTATGATGCT GTGTTGTTTA GTAATGAGTT GGAAATACTA ACCTTGCGAT
GGAGAGAACT GTACCCTTAC ATAACTGATT TTGTTCTCCT TGAATCAAAT TCTACGTTTA CCGGATTGCC CAAACCTCTG
GTTTTCCAAA GCAATAGGGA GCAGTTCAAA TTTATCGAGC CACGATTAAC TTATGGTACT ATTGGTGGGA GATTTAAGAA
GGGAGAAAAC CCATTTGTTG AGGAGGCATA TCAGCGTGTA GCATTGGACC AGCTCCTCAA GATAGCTGGT ATTAGTGATG
ATGACTTGTT GATTATGTCT GATGTGGATG AGATACCAAG CGCTCACACT ATTAATCTCC TGAGGTGGTG TGATGAAGTA
CCCTCAATCC TTCATCTGCA GCTGAAAAAC TATCTCTATT CATTTGAATT TCGCGTTGAT GATAAGAGTT GGAGGGCTTC
AATTCACAGG TATCAGACTG GGAAGACAAG GTATGCACAT TATCGCCAAT CTGATGACAT GCTGGCCGAT GCTGGCTGGC
ATTGTAGCTT TTGCTTCCGT CGGATCAGTG ATTTCATTTT TAAGATGAAA GCCTACAGCC ACTATGATAG AGTCAGATTC
TCTCACTATT TAAATCCTGA TAGAATTCAG AAGGTAATAT GCAAAGGTGC TGATTTGTTT GATATGCTGC CGGAGGAGTA
CACTTTCAAG GATATCATTG GCAAAATGGG ACCAATACCA CATTCCTATT CTGCAGTTCA TCTTCCTGCT TTTCTTCTGG
AAAATGCTGA GAAGTATAAA TTCCTTTTGC CTGGAAATTG CAAAAGAGAA AAATGA

>Vigan.01G090800.01
MWWMMGEAGG NYSSKKTDDL CSNVCGQESS QVSSMSRIRC ILRGLDVKTY IFMFAVVPMC IFGFYIHGQK ISYFLRPLWE
KAPKPFNVIP HYYNENVTME NLCRLHGWGV REYPRRVYDA VLFSNELEIL TLRWRELYPY ITDFVLLESN STFTGLPKPL
VFQSNREQFK FIEPRLTYGT IGGRFKKGEN PFVEEAYQRV ALDQLLKIAG ISDDDLLIMS DVDEIPSAHT INLLRWCDEV
PSILHLQLKN YLYSFEFRVD DKSWRASIHR YQTGKTRYAH YRQSDDMLAD AGWHCSFCFR RISDFIFKMK AYSHYDRVRF
SHYLNPDRIQ KVICKGADLF DMLPEEYTFK DIIGKMGPIP HSYSAVHLPA FLLENAEKYK FLLPGNCKRE K*