GBrowse Details

Vigan.01G080700.01

Basic Information:
Name: Vigan.01G080700.01
Multiple alignment
Variant Information
Position: Chr01:6560661..6566297 (+ strand)
Length: 5637
Functional Information:
Description: Similar to shikimate kinase 1, chloroplastic-like isoform X1. [XP_004504020.1, Cicer arietinum]
InterPro: Shikimate kinase/Threonine synthase-like 1 (IPR000623)
Shikimate kinase, conserved site (IPR023000)
P-loop containing nucleoside triphosphate hydrolase (IPR027417)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:7.74,4.38,9.43,19.32,15.25,20.13,14.07,20.72
Arabidopsis thaliana homolog: AT2G21940.4
Structure :
Position: Chr01:6560661..6560850 (+ strand)
Length: 190
Type: five_prime_UTR
Position: Chr01:6560851..6561055 (+ strand)
Length: 205
Type: CDS
Position: Chr01:6562104..6562162 (+ strand)
Length: 59
Type: CDS
Position: Chr01:6562318..6562372 (+ strand)
Length: 55
Type: CDS
Position: Chr01:6562453..6562525 (+ strand)
Length: 73
Type: CDS
Position: Chr01:6562957..6563044 (+ strand)
Length: 88
Type: CDS
Position: Chr01:6564876..6564958 (+ strand)
Length: 83
Type: CDS
Position: Chr01:6565060..6565189 (+ strand)
Length: 130
Type: CDS
Position: Chr01:6565354..6565432 (+ strand)
Length: 79
Type: CDS
Position: Chr01:6565590..6565654 (+ strand)
Length: 65
Type: CDS
Position: Chr01:6565780..6565839 (+ strand)
Length: 60
Type: CDS
Position: Chr01:6565840..6566297 (+ strand)
Length: 458
Type: three_prime_UTR

>Vigan.01G080700.01 class=Sequence position=Chr01:6560661..6566297 (+ strand)
CGTCATTCCA TTTTATTATA ATTATAAATT AATATTACAC TCAGCCTCCA TTCCAATTAG ACTCTATTTT TCCATTTTCT
CTCTCTCTTT CTCTGCACCT TCTTCTTCTC CTTCACTTCC TCTGGATTTT GGTTCCGTCG TTTCGGTTAT CTTGCATCGT
AATCGAGGGG AAAACTGTGT CGTTTCAGCA ATGGACGTGA AAGCTGCACG TGGGTTACAA CTTTCAGCGG TTGTTCAGCA
TGAAAAGATT GGGAGAAGAC CCAGAGCTGG TCGTTTGGGT ATGTCTCCAG AACCGCAGAG GATTCGGCTT TTTGTTTCCA
CCAGGTTGTC TTCAACCGTG ACACGCCGCA GAACAACCTC TCTGGAGGTT TCTTCTTCTT ACGACAACGT TTCAGGTTGC
CTATTAAACC GATCACCTCT TCATGATTTT TCCTTTTTAA TTCTATTGGA TTGCGCTATT GCTGCATTCC ACTCGCTTTT
GTTCTTGAAT TGAAGGGTTG TTTCTCTCTC TCTTAAAAAA TTGCTGAAAG GAATGTTGAA AAGAAGGATT AGTAATTGCG
TAAAGAAGCT ACAACGAAGA AATGAACCGT ACTTGTAAAT TGTTAATGGA TTGGAAACAA CGATCTGTTC TTGTGCGGAA
TATTCTGAAT CTGCCTCCGG AGTACATTCC CATCAGTTTT TGAGTTTAAT TTGATTTTGA GGGGGGATGG TGAGAGAGAT
ATCGTGATAA ATAATTTATG TGAAATTTTC GTCTTTCACC TTGCTGAATA TTGTGTGGCA TCCATGTAAT TTGCCTTCAC
CTGGTGGGAT ATGCTTTTTT TTTGTTATTG TTTGAGAAAA GTACTGACAC TATCAACTTA TTAGAAAAAT TTTAGAGACG
ATTTTAAAAT AACTACTACA GAAGTGATTT TTAATTTTAT GTCAATCTAT GATTATGCAA TAGCGCAAAC GACTTTTAGA
TCGAAAGTAC GTTCTGATTA AATTCTAGAG GTTCTGTGCA TCCATTCTTT TTCTTGTTCC AATTATGTAC ATAAACATAG
ATTAAGGTTT TGTTTTTGTT TTTCCAGCAA TATCTATATT GAAAAAAGTT ATGTGATTAT GAAAAGATAA TACTAGCATT
CCCAGGTCCA GTTTTGAGCT AGCTTTTATT ATCTGCTTAT TGAATTACAT TTCCGTTTCT ATTGTTTGGT TGAATAAAGT
ATTAAATCAC ATCTTCTTAG ATGCAGAGGG TGTTTGGATA CAAAGCTAGA AGGGCTTTTG AGAGTTTCTC TACTGCAAAT
AACTCAATGT TTCCAATGGA GAATATCTTA AAATCACTTC TAGCTTGTAT CCAGATAGAG GTAGTATATA ATATGCCTAC
ATTGGATCTT GTTTGTTTCT GAATAAAACA AGTGCTATTT GTTTTAATTA TTTACATCTT ATGTCGTCAT GTTGTTCTCT
TAGCTTCAAT ATTGGAATCT GGACATGTTC GTTCTCCTCT TGACGAAGAA TTGATTCTAA AGGTAAAAGC ATAATGCATT
GACGCTTTTT ATCATGTTTA GTTCATTGAG AAAATTCAGT CTGGTTAATA GCTAGGAAAA ACATCATAAA TTAGTATTAA
GTCAATTTGT TGCATCTTTG AGTATCTATT TGCTGACTCG AATCAATAAA ATTGCAGAAT AGATCGCAAG AGATCCAACC
ATATTTAAAT GGACGCTGTA TATATCTTGT TGGTTAGTGT CTTTCTTCAC TTCTTGTGCT TTACATGGTG TGTTTATTTT
GTCATTAAAC TTGCTTTGAA TTTGACAAGC AGGAATGATG GGCTCTGGGA AAACCACTGT GGGGAAGATA ATGTCGCAAG
TACTTGGTTA TTCATTTTGT GACAGGTTAG TGTGTTAATT CTTCATCTTT TCTCCGTGGA GAGACAATGC GTTTAATAAC
AAGTAAATCT TGTGTAATTG AATATCAATG GGCCAATAGA GTTCAGGAAG AATGATCTTT TGTATGTATA GCAGCTCTGT
TATTTTTATT TCATTATATT TCAGTATACG AGATTCAATA TTCAATTAAT ATCTGAGGGA ACTTAGAACA TGTAAAAGAT
GTATATACGT TTGATTGAAT TCAATAGATG AAAACAGGGT GGGTCATGGT TGAGCTGGGG AGTATGGTTT ACTCTGGTGT
ACAATGTTTC TGTTCAGATC CTTATACTGC AATGTACATG TTCTTTCACA ATACAATTAC TCTGTTTCAT GACCACATCA
GAGGTTTTGC CAAATATTTT CTCTATTTCT TGTGCTTATG GGTTTTTAAT TTGTAGCGAT ACACTGGTGG AGGAGGAGGT
TGGAGGAAAC TCTGTAGCTG ATATTTTCAA GCACCATGGT GAGCCTTTCT TTCGTAATAA GGAGGTCAGT TTGAAAACAC
CACTTTTCAC TTGTCATTCT TCAGTGTCCA GACTTCAGAG AGTTTGTTAG TTGTTTTAAC TTTTAGATTT TCCTATTTCT
TTAATCTCAT CGAGCATCTT CATGATCTCG TATCTTCATA TTATAAGCTT GCGTTGGTGT TTAACAGTTT TAATTGGGTA
ATAGAAAATA GGCTTACATA TGTTTTTAGT CCTTGAACAA TAAAAATATG GCTTTTCATT TTGTTCCCTA TTCTTTTTCT
TTTATAATTC TTACATTTAG CAATGTGTTT GTAGTCCTTC ATTAGAGACT AAAAGCACTT AATTTTAATC CAATAGATAT
CAGATCTTGT GGAAGGGGTT AGTCATTCGC AAAGCAGAGA ATCACTGTTC AAGTCCCTAC TAAAAGAAGG GGCCCACATT
TAGTATATGA CCATCTTGAA AAAAATCTTA GTTGAACAGG GATTCTCATG ATCGCCTTTA TATTGAAGTA ATTATTATCA
AGGTTTTCGA TGGTGAGATA GCTCACTTAT TGTTGCATGC CACTTCTGTG TGCCACTAGT GAGCTATACC CTGTTCTACT
TTAACCTGTC CCGGGACAAC TCTGCTGCCT TATTCTGAAA ATATGGAAGT GTTCTGATTT TGTATAGCTT TCTCCCCTCC
TTCCAGTAGC TTTCTTCTCT ATTTTCCACC TTTTTCCCAT TTGCCTTTTC TATCCTGTTA AGCTATTCTG GCAACATTGT
TCAGTGATAT GTAACAGCTG GTCTCAGCCT CCAGTTGAGT CAATTTTCGT CTGAGTAAAT CTCCACCTGT CACCTCAAAC
AAAACTCCAC CATCCCCCAT CTGTGATTTG TAGTTTGGTC ATGTGTTTGG TTTATTTCAT CTTGCACTTC AGTTGATTGG
ATGTGTTTTT AGTTCACGAT GAACTTGGAT ATGTTCCAAG GGCTTGCTGT GTTGTCTTTC CAGCAATTCT CACTTCTCCA
TCTCCTGCAG CTCCGTGTTG CCATTTCAAC TATGCTTAGT GGAATATTTT TCTTTCACTT AAGGAAAAAA ATTGTAACAA
GCTTAAAGCT TAGAAAGCAT TAGCACGAGG AGCAGATTTG AATTATGTGT TGCTCACGTA GTCCATGTTA AAATGCATTT
AGTATTAGTA GACATTAACG TTTAGGAAAT TGCACTCGCT TAGTCTTAGG GGTGTTTGGT ATATACGAGA ATAGTTTCTA
GTTTTATGGC AATCAGAAGT TGGGTTGGGA ATGCTTGTTT CGTATGTTTG ATTTGTTTTA AAAAAGTAGC CTTTTCTGGA
AACCGTGTTT CCTGGGAATG CTTTTTGGCT AAGTCCCCCA CAAAATCGTT TTCATGGGAG GTGGGTGGGA TAACTTTCCT
TAGCTAAAAG TTCTTTTACT ATGGTAAAAA TTCCTTGTTC ATATTAAATC ATTTAATGTG GTATATAATT AAGGTTTCTG
GTAAAAATAT CATCTTACTC TTTAATCCCG AAAAACCCCC ATAAATATTT CCAAGAATAT TTGTGACGAA GTAAATATAT
TTTAGTTATT CTTAGGAATC ATGATTCTTA GAAATCACGA TTCTGAGTAT GATAAAGCTT CTGTTGTACG TACCACAGAA
TGTCCATAGA TGGATGTTTT GACTTTTGCA TAATCGAAGT ACTAAACAAG AAAGCTTTTT TGTCCAGATC TTTCTCTCTA
CAATGTCCTG TCTATAGTTC TCTCTTCCAC CCTCTCTAAA TTCCATGGAC ACTTTGCTAT CATGAATTGT TCTAGATTAT
TATCGAGGTC CTGTTATTTC ATTTGCCGTT TCCTTTCCTT GCTTTACCAT TTCAGACTGA GGTATTGCGG AAGCTTTCCC
TGATGCGTCA ACTTGTTATT TCTACTGGTG GAGGTGCTGT TATAAGGCCC ATTAATTGGT ATAAGAATTA ACTCACTACT
GAGAAAAGTT TAAACTTTAC TCTTTCCAAT TAAATCTTTT CTCATGTATA TATGGACTTG CATGTGAATG GCTTTCCAGG
AAATATATGC ACAAGGGGGT TAGTGTTTGG TTGGACGTAC CAGTGGAAGC CTTGGCACGG AGAATTGCCG CTGTAGGAAC
TAATTCTCGC CCCCTTCTAC ACTATGAAGC AGGGGATCCT TATTCACGGG TAGTTATTAA TGTTCCATAG TATGACTTTA
TTTTATTTTT TTCGAAACAC AGCATATTAA TTTAGGTATT AAAGCTTGCA AGCTGGACCA ACTTTTCATC GTAGGAATTT
GTATTGAAAT TTTTTGCCTC CAAATAATTT TTCCCTTTGG AATTCAAATG CAGGCCTTTA TGCGATTGTC TGCTATTTTT
GAAGAGAGAG GCGAGTCTTA CGCCAACGCC AATGCCAGGG TCTCGTTAAA AAGTTTGTCA CTTAATCTTT CTCGTATGTT
TTGAAATACT AAATGTGGAA TTGTCCACAA TATCTGGGAA AGAATAAACA TGCTTTGTAT TTATTGTTTT GTGTATGCTT
CTTAGATGAT AACATTTAAC AGCAATATTT GATGTTCTGT TTGTACCAGG TATAGCAATA AAACTCGGAA AAAGAGATGT
GTCGGAATTG TCTCCAACTG ATATTGCAAT TGAGGTCTTG AGCAATTTCT ATCTGTATTT TCTTGGCTCC AGGCAAACTG
AAAAATTCCT GGGAGCTATA GTTAAATCTG AATTTTGCAT TTTAATGCTT ATCTACTGTT ATCCGTTTGT ATCTTGCAGG
CACTGGATCA AATTGACAAC TTTTTGAAGG GTGAAGGTGA CAGTTATGCA GAATGCTAAT GCCAGCTTTG CTCACAAACT
TCATTCGATT GTTCATATTT TTGTTCTATG CAATTTACGA TTGCAATTAA GGTCAAGTCG TTGACCTTAA TCTACATGTT
GTGCAGTATC TCTTTGGTAA AAAAAGAAGT AATACATCAT GGCACTTGTT TAAGCGTAAT TTGTGTCAGC AAGTTAGCAT
GATATGATTG TCAATAGCAA CGGTATTTAA TTTATGTTTC CTTTATTGTT GATGTATATG TATATATTTA CTGGAAAACA
AAGTACTGTA ATGCGAGTTG AGTTGATCAA TATATGTATG TCCTCCTCGA ACGAGGTTTT TGTACGTAGT AAAGCTGCAC
TCACATACTT TTATCTTACA TACATCTCCC ATGCGAGCAT TTGGCGTTGT CGTGTTTTAT GGTTGTTCTT GTGCGAAAGA
AATCTAAAAC ACTCGCCAGT TATCTTTCAA TTCTAAA

>Vigan.01G080700.01
CGTCATTCCA TTTTATTATA ATTATAAATT AATATTACAC TCAGCCTCCA TTCCAATTAG ACTCTATTTT TCCATTTTCT
CTCTCTCTTT CTCTGCACCT TCTTCTTCTC CTTCACTTCC TCTGGATTTT GGTTCCGTCG TTTCGGTTAT CTTGCATCGT
AATCGAGGGG AAAACTGTGT CGTTTCAGCA ATGGACGTGA AAGCTGCACG TGGGTTACAA CTTTCAGCGG TTGTTCAGCA
TGAAAAGATT GGGAGAAGAC CCAGAGCTGG TCGTTTGGGT ATGTCTCCAG AACCGCAGAG GATTCGGCTT TTTGTTTCCA
CCAGGTTGTC TTCAACCGTG ACACGCCGCA GAACAACCTC TCTGGAGGTT TCTTCTTCTT ACGACAACGT TTCAGCTTCA
ATATTGGAAT CTGGACATGT TCGTTCTCCT CTTGACGAAG AATTGATTCT AAAGAATAGA TCGCAAGAGA TCCAACCATA
TTTAAATGGA CGCTGTATAT ATCTTGTTGG AATGATGGGC TCTGGGAAAA CCACTGTGGG GAAGATAATG TCGCAAGTAC
TTGGTTATTC ATTTTGTGAC AGCGATACAC TGGTGGAGGA GGAGGTTGGA GGAAACTCTG TAGCTGATAT TTTCAAGCAC
CATGGTGAGC CTTTCTTTCG TAATAAGGAG ACTGAGGTAT TGCGGAAGCT TTCCCTGATG CGTCAACTTG TTATTTCTAC
TGGTGGAGGT GCTGTTATAA GGCCCATTAA TTGGAAATAT ATGCACAAGG GGGTTAGTGT TTGGTTGGAC GTACCAGTGG
AAGCCTTGGC ACGGAGAATT GCCGCTGTAG GAACTAATTC TCGCCCCCTT CTACACTATG AAGCAGGGGA TCCTTATTCA
CGGGCCTTTA TGCGATTGTC TGCTATTTTT GAAGAGAGAG GCGAGTCTTA CGCCAACGCC AATGCCAGGG TCTCGTTAAA
AAGTATAGCA ATAAAACTCG GAAAAAGAGA TGTGTCGGAA TTGTCTCCAA CTGATATTGC AATTGAGGCA CTGGATCAAA
TTGACAACTT TTTGAAGGGT GAAGGTGACA GTTATGCAGA ATGCTAATGC CAGCTTTGCT CACAAACTTC ATTCGATTGT
TCATATTTTT GTTCTATGCA ATTTACGATT GCAATTAAGG TCAAGTCGTT GACCTTAATC TACATGTTGT GCAGTATCTC
TTTGGTAAAA AAAGAAGTAA TACATCATGG CACTTGTTTA AGCGTAATTT GTGTCAGCAA GTTAGCATGA TATGATTGTC
AATAGCAACG GTATTTAATT TATGTTTCCT TTATTGTTGA TGTATATGTA TATATTTACT GGAAAACAAA GTACTGTAAT
GCGAGTTGAG TTGATCAATA TATGTATGTC CTCCTCGAAC GAGGTTTTTG TACGTAGTAA AGCTGCACTC ACATACTTTT
ATCTTACATA CATCTCCCAT GCGAGCATTT GGCGTTGTCG TGTTTTATGG TTGTTCTTGT GCGAAAGAAA TCTAAAACAC
TCGCCAGTTA TCTTTCAATT CTAAA

>Vigan.01G080700.01
ATGGACGTGA AAGCTGCACG TGGGTTACAA CTTTCAGCGG TTGTTCAGCA TGAAAAGATT GGGAGAAGAC CCAGAGCTGG
TCGTTTGGGT ATGTCTCCAG AACCGCAGAG GATTCGGCTT TTTGTTTCCA CCAGGTTGTC TTCAACCGTG ACACGCCGCA
GAACAACCTC TCTGGAGGTT TCTTCTTCTT ACGACAACGT TTCAGCTTCA ATATTGGAAT CTGGACATGT TCGTTCTCCT
CTTGACGAAG AATTGATTCT AAAGAATAGA TCGCAAGAGA TCCAACCATA TTTAAATGGA CGCTGTATAT ATCTTGTTGG
AATGATGGGC TCTGGGAAAA CCACTGTGGG GAAGATAATG TCGCAAGTAC TTGGTTATTC ATTTTGTGAC AGCGATACAC
TGGTGGAGGA GGAGGTTGGA GGAAACTCTG TAGCTGATAT TTTCAAGCAC CATGGTGAGC CTTTCTTTCG TAATAAGGAG
ACTGAGGTAT TGCGGAAGCT TTCCCTGATG CGTCAACTTG TTATTTCTAC TGGTGGAGGT GCTGTTATAA GGCCCATTAA
TTGGAAATAT ATGCACAAGG GGGTTAGTGT TTGGTTGGAC GTACCAGTGG AAGCCTTGGC ACGGAGAATT GCCGCTGTAG
GAACTAATTC TCGCCCCCTT CTACACTATG AAGCAGGGGA TCCTTATTCA CGGGCCTTTA TGCGATTGTC TGCTATTTTT
GAAGAGAGAG GCGAGTCTTA CGCCAACGCC AATGCCAGGG TCTCGTTAAA AAGTATAGCA ATAAAACTCG GAAAAAGAGA
TGTGTCGGAA TTGTCTCCAA CTGATATTGC AATTGAGGCA CTGGATCAAA TTGACAACTT TTTGAAGGGT GAAGGTGACA
GTTATGCAGA ATGCTAA

>Vigan.01G080700.01
MDVKAARGLQ LSAVVQHEKI GRRPRAGRLG MSPEPQRIRL FVSTRLSSTV TRRRTTSLEV SSSYDNVSAS ILESGHVRSP
LDEELILKNR SQEIQPYLNG RCIYLVGMMG SGKTTVGKIM SQVLGYSFCD SDTLVEEEVG GNSVADIFKH HGEPFFRNKE
TEVLRKLSLM RQLVISTGGG AVIRPINWKY MHKGVSVWLD VPVEALARRI AAVGTNSRPL LHYEAGDPYS RAFMRLSAIF
EERGESYANA NARVSLKSIA IKLGKRDVSE LSPTDIAIEA LDQIDNFLKG EGDSYAEC*