GBrowse Details

Vigan.01G076800.01

Basic Information:
Name: Vigan.01G076800.01
Multiple alignment
Variant Information
Position: Chr01:6207334..6210780 (+ strand)
Length: 3447
Functional Information:
Description: Similar to Cinnamyl-alcohol dehydrogenase. [F8SMC1, Glycine max]
GO: Biological Process: oxidation-reduction process (GO:0055114)
Molecular Function: zinc ion binding (GO:0008270)
Molecular Function: oxidoreductase activity (GO:0016491)
Molecular Function: transferase activity, transferring acyl groups other than amino-acyl groups (GO:0016747)
InterPro: Alcohol dehydrogenase superfamily, zinc-type (IPR002085)
Alcohol dehydrogenase, zinc-type, conserved site (IPR002328)
GroES (chaperonin 10)-like (IPR011032)
Alcohol dehydrogenase, C-terminal (IPR013149)
Alcohol dehydrogenase GroES-like (IPR013154)
NAD(P)-binding domain (IPR016040)
Polyketide synthase, enoylreductase (IPR020843)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:104.25,29.44,87.15,23.96,57.94,237.35,18.16,31.33
Arabidopsis thaliana homolog: AT2G21730.1, AT4G39330.1
Automatic updates:
Name: NM_001254303 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max probable mannitol dehydrogenase-like (LOC100795575), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001254562 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max probable mannitol dehydrogenase-like (LOC100819684), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:6207334..6207479 (+ strand)
Length: 146
Type: five_prime_UTR
Position: Chr01:6207480..6207586 (+ strand)
Length: 107
Type: CDS
Position: Chr01:6207699..6207812 (+ strand)
Length: 114
Type: CDS
Position: Chr01:6208874..6209387 (+ strand)
Length: 514
Type: CDS
Position: Chr01:6209962..6210115 (+ strand)
Length: 154
Type: CDS
Position: Chr01:6210379..6210581 (+ strand)
Length: 203
Type: CDS
Position: Chr01:6210582..6210780 (+ strand)
Length: 199
Type: three_prime_UTR

>Vigan.01G076800.01 class=Sequence position=Chr01:6207334..6210780 (+ strand)
ACGAACCTCG AAAATCATTA TATATATATA TATATATATA GACTGTGTCA CTGCTCTGCA AGGTGTCACG TCACTGCGAC
GAGGGTCCAA GAGTAAAGAA GAGGGTTGAG GAAGAGCTTG AGAGTAGAAG AAAAAGAAAA GAAATCATGG CAGAATCTGC
AAAATCTCCA CAAACTGAAC TTCCTCACAG AGCTTTTGGG TGGGCTGCTA CAGACACTTC TGGGACCCTT TCGCCCTTTC
ATTTTACCAG AAGGTTTTTT TTTTTTCATT TTTATTCTCA TTTAGTTTAA CATTTTTCTC CATTTCTCAG CGAGATCAAT
GCTGGTTGAG ACCAATCTCC TCCTCATTTG ACGTTATCAT TGCAGGGAAA ACGGCGTTGA CGACGTCACC GTCCAGATTC
TGTTTTGCGG GGTTTGCCAT TCTGATCTTC ACACTGTCAA AAACGACTGG GGTTTCACCA CTTACCCTGT CGTTCCAGGG
TACCCTTCCT TCAACTGCAA TCGTTTTTCC TTTTTAATTA AATAATCCTT TTTCCTCAGT GTAATTTTTT ATCCCCAGAC
ATAGATTTGA TTATCGTAAT ATAAACTATA TAATATGTCA TCTGTCATTA TTGAGTTTGA ATGTGGTGGG ACACTTAAAA
TAAAAACAAC GCTGTTCTCC ATCCTTCAAT CGAGCACAGT TGGGGCCTGA AATTTCGATC TCAATTGTCG GTTGACTTAA
TAATAGGAAA AACCAAACCT TTAGTAAAAT AAGCGCCTAA TCCAAAACGC GCGTTTTGTT TTACATCACC TCACATGGGC
TGTATATTAT ATTTATCTCA TTTTCCATCG GACGTGTGTT ACATAATTTT GGTGTGATCA GTGTACATAT TAACTTGACC
ATGTTGGAAA CTATGCAAGC AACAATGGTT AGAAGTCCAA TAAATTCTTT ATATTATACT TGAATCTATA AATTCTCCCA
ATTATTGAGC TATCCTGCTT AAATCCTAAC ATAACATGAA TGATTGCTAA AATTTAAGGG TGTGTTTGAT TTCTATTTCT
AATTACAAAA ATTTTTCCGA TTTCAAAATG GGATGAAGAT TAAATAAGGT TTTTGAGCAG CTTGTGATGT TGAAAGAAGG
TTGGATAAGA TGGAGAGTGA AGAAGATGAA ATATATCTTC TAATTGTTTA TTTGCCTTTT CTGACTTTTG GAAATAATTT
TAAAAACAAA TGTTTTTTGA ATGAGAAATT GCTTGCTGAT CACTGTGAAA TTGCTTTAGA AAACAGATTT TAAAATCAGA
CTGTGAGAAG AGAATCAAAC TGACCCTAAT GCAGTTTTTG GTTTTAATGA TGTAATGTTC TTTTGTCATA TATATCTAAG
TAAATTAATT GTCTTTATTC CTTTCTAGGT TTCTCTTCGT GAGTTGTACG TAGTATTTAA GGCTTGCACG TGTTTGTGCA
ATTGCCAACC CTTGCAGATA GCAATACTTT CTTTTGAAGG TAAAATCAGA ACGTCTGAGA TCACCTTGCA TTGACGTTTT
AGTATTTTTT TTATTTTCAG GCATGAAATT GTTGGTGTTG TGACAAAAGT TGGAAATAAT GTGAAATACT TTAAAGCGGG
TGATAAAGTG GGAGTTGGTG TTATAGTGGA GTCTTGCAAG GAATGTGAAT GTTGCCAACA GGATTTAGAG AATTACTGTC
CCCGCCCTGT GTATACCTAT AATTCTCCTT ATTATGATGG GACACGAACC CAAGGTGGTT ATTCTAACAT TGTGGTTGTC
AACCAGCGTT ATGTGCTCCG ATTTCCTGAC AACTTACCCC TTGATGCTGG TGCTCCACTG CTGTGTGCGG GGATAACTGT
GTATAGCCCT ATGAAATATT ATGGGATGAC AGAGCCTGGC AAACATCTGG GAGTGGCAGG GCTAGGTGGG TTAGGCCATG
TTGCAGTCAA AATTGGTAAG GCCTTTGGGC TGAAAGTTAC TGTCATTAGT GGATCTCCAA ACAAGGAAGC TGAGGCAGTT
GACACACTCG GGGCTGATTC TTTCGTTCTT TCCTCAGACC CTGCAAAAAT GAAGGTAACT GAGATACAGG ACTGAAAAGC
ATTCAAAGGA ATAATACAGT TCCTAAGTAA TCTAGCAATG ATAACGATAT TCTTATGCTA CTGTTGGGCG TCTCGGGTAG
CGACTAATAT ATGCTTGATG CGTTGATATA TTTTTCTCAT TTGTAATGAT AGTTTTTTAG TTATGTTTAA AAATTAGGTT
ATAATAATTG CCATATTCAA AAGTTATTTA TCAAATAGTA GTTACTTGCA AGATCTAAAG CTAACTAACC TAGAGAGGTA
AAAAAAGTGT GGAATTGAGT GATATGAGAC CATCATTACC CTATTGATTG AAAATAAAGT ATGTTTGAGT ACAACAAATA
TTCTGAGCGA CTTTGCAGCT GTTGTCAATA TTAGCCTTGA AGTGACGAGA AAACCACACC TCCTCTGCTG ATCAAGTTAA
TGGGTTACGC ACTATCCAAG CACTTTAGAA TATAATAACG AACCTTTTAA TCTGCTTCTC CATGATAATA ATCATTAGTA
GAACAATGGA TTGACTGGTC ATGCAATTTC TCATGACGTA TTTGTTAACT TGCCGGGATT CTATACAGGC TGCTATGGGA
ACCATGGACT ATATCATAGA CACAATTTCT GCTGTTCATT CGCTGAGTCC ACTGCTTGGT CTGCTGAAGC TGAATGGGAA
GCTAGTTACT GTAGGGTTGC CTAACAAGCC TCTTGAGGTG CCTATCTTCC AAATAGCCGC AGGTGAGCCA TCAATCGTCT
CCAAACTAGT ATTATGTAGT TTTTGTATGT TATTAGGCAC AAGTTATATA CCTCACAGTA GCGTAGAGTC AAAGATACTT
GGACTGTAAA TCTTTCTCAA GAAGCTGAAT GGAAGAGGGA GTTTTTTAAT TCATTGTAGA GTCAACATTT TCCAAATTTT
GAGCAGGGCC ACCTTTCGCA GTAAACAATA GTACATGGAT TTGACTAATG AAAGAAATGT TTTGTTATGT AACATATGGA
TGTAGGAAGG AAGCTTGTAG GGGGGAGCAA CTTTGGAGGG ATCAAGGAAA CCCAGGAAAT GCTTGATTTC TGCGGAAAGC
ACAACATAAC TGCAAATATC GAGCTGATTA AGATGGACCA AATCAACACT GCCATGGAAA GGCTTGGAAA AGGTGATGTG
AAATATCGCT TTGTGATTGA TGTGGCCAAC TCTTTCTCAA GTTTGTAGAA GAACATGCGC AAGCGTGTCA CCTTACATGT
CTGGCACCTT AGATTTGTCT CGGTATCTTA AGAATAATTA ACATTGGCTT TGGTATCTTA AGAATAGTTA AGATTGGCCT
TGTTCCAGAA CATCCTCTCT TCAATAATAT TACCTTTTTG GGTTTCCAAT TTATATTATG TTCCTTTATT ATCTTTATCA
ATAGCAG

>Vigan.01G076800.01
ACGAACCTCG AAAATCATTA TATATATATA TATATATATA GACTGTGTCA CTGCTCTGCA AGGTGTCACG TCACTGCGAC
GAGGGTCCAA GAGTAAAGAA GAGGGTTGAG GAAGAGCTTG AGAGTAGAAG AAAAAGAAAA GAAATCATGG CAGAATCTGC
AAAATCTCCA CAAACTGAAC TTCCTCACAG AGCTTTTGGG TGGGCTGCTA CAGACACTTC TGGGACCCTT TCGCCCTTTC
ATTTTACCAG AAGGGAAAAC GGCGTTGACG ACGTCACCGT CCAGATTCTG TTTTGCGGGG TTTGCCATTC TGATCTTCAC
ACTGTCAAAA ACGACTGGGG TTTCACCACT TACCCTGTCG TTCCAGGGCA TGAAATTGTT GGTGTTGTGA CAAAAGTTGG
AAATAATGTG AAATACTTTA AAGCGGGTGA TAAAGTGGGA GTTGGTGTTA TAGTGGAGTC TTGCAAGGAA TGTGAATGTT
GCCAACAGGA TTTAGAGAAT TACTGTCCCC GCCCTGTGTA TACCTATAAT TCTCCTTATT ATGATGGGAC ACGAACCCAA
GGTGGTTATT CTAACATTGT GGTTGTCAAC CAGCGTTATG TGCTCCGATT TCCTGACAAC TTACCCCTTG ATGCTGGTGC
TCCACTGCTG TGTGCGGGGA TAACTGTGTA TAGCCCTATG AAATATTATG GGATGACAGA GCCTGGCAAA CATCTGGGAG
TGGCAGGGCT AGGTGGGTTA GGCCATGTTG CAGTCAAAAT TGGTAAGGCC TTTGGGCTGA AAGTTACTGT CATTAGTGGA
TCTCCAAACA AGGAAGCTGA GGCAGTTGAC ACACTCGGGG CTGATTCTTT CGTTCTTTCC TCAGACCCTG CAAAAATGAA
GGCTGCTATG GGAACCATGG ACTATATCAT AGACACAATT TCTGCTGTTC ATTCGCTGAG TCCACTGCTT GGTCTGCTGA
AGCTGAATGG GAAGCTAGTT ACTGTAGGGT TGCCTAACAA GCCTCTTGAG GTGCCTATCT TCCAAATAGC CGCAGGAAGG
AAGCTTGTAG GGGGGAGCAA CTTTGGAGGG ATCAAGGAAA CCCAGGAAAT GCTTGATTTC TGCGGAAAGC ACAACATAAC
TGCAAATATC GAGCTGATTA AGATGGACCA AATCAACACT GCCATGGAAA GGCTTGGAAA AGGTGATGTG AAATATCGCT
TTGTGATTGA TGTGGCCAAC TCTTTCTCAA GTTTGTAGAA GAACATGCGC AAGCGTGTCA CCTTACATGT CTGGCACCTT
AGATTTGTCT CGGTATCTTA AGAATAATTA ACATTGGCTT TGGTATCTTA AGAATAGTTA AGATTGGCCT TGTTCCAGAA
CATCCTCTCT TCAATAATAT TACCTTTTTG GGTTTCCAAT TTATATTATG TTCCTTTATT ATCTTTATCA ATAGCAG

>Vigan.01G076800.01
ATGGCAGAAT CTGCAAAATC TCCACAAACT GAACTTCCTC ACAGAGCTTT TGGGTGGGCT GCTACAGACA CTTCTGGGAC
CCTTTCGCCC TTTCATTTTA CCAGAAGGGA AAACGGCGTT GACGACGTCA CCGTCCAGAT TCTGTTTTGC GGGGTTTGCC
ATTCTGATCT TCACACTGTC AAAAACGACT GGGGTTTCAC CACTTACCCT GTCGTTCCAG GGCATGAAAT TGTTGGTGTT
GTGACAAAAG TTGGAAATAA TGTGAAATAC TTTAAAGCGG GTGATAAAGT GGGAGTTGGT GTTATAGTGG AGTCTTGCAA
GGAATGTGAA TGTTGCCAAC AGGATTTAGA GAATTACTGT CCCCGCCCTG TGTATACCTA TAATTCTCCT TATTATGATG
GGACACGAAC CCAAGGTGGT TATTCTAACA TTGTGGTTGT CAACCAGCGT TATGTGCTCC GATTTCCTGA CAACTTACCC
CTTGATGCTG GTGCTCCACT GCTGTGTGCG GGGATAACTG TGTATAGCCC TATGAAATAT TATGGGATGA CAGAGCCTGG
CAAACATCTG GGAGTGGCAG GGCTAGGTGG GTTAGGCCAT GTTGCAGTCA AAATTGGTAA GGCCTTTGGG CTGAAAGTTA
CTGTCATTAG TGGATCTCCA AACAAGGAAG CTGAGGCAGT TGACACACTC GGGGCTGATT CTTTCGTTCT TTCCTCAGAC
CCTGCAAAAA TGAAGGCTGC TATGGGAACC ATGGACTATA TCATAGACAC AATTTCTGCT GTTCATTCGC TGAGTCCACT
GCTTGGTCTG CTGAAGCTGA ATGGGAAGCT AGTTACTGTA GGGTTGCCTA ACAAGCCTCT TGAGGTGCCT ATCTTCCAAA
TAGCCGCAGG AAGGAAGCTT GTAGGGGGGA GCAACTTTGG AGGGATCAAG GAAACCCAGG AAATGCTTGA TTTCTGCGGA
AAGCACAACA TAACTGCAAA TATCGAGCTG ATTAAGATGG ACCAAATCAA CACTGCCATG GAAAGGCTTG GAAAAGGTGA
TGTGAAATAT CGCTTTGTGA TTGATGTGGC CAACTCTTTC TCAAGTTTGT AG

>Vigan.01G076800.01
MAESAKSPQT ELPHRAFGWA ATDTSGTLSP FHFTRRENGV DDVTVQILFC GVCHSDLHTV KNDWGFTTYP VVPGHEIVGV
VTKVGNNVKY FKAGDKVGVG VIVESCKECE CCQQDLENYC PRPVYTYNSP YYDGTRTQGG YSNIVVVNQR YVLRFPDNLP
LDAGAPLLCA GITVYSPMKY YGMTEPGKHL GVAGLGGLGH VAVKIGKAFG LKVTVISGSP NKEAEAVDTL GADSFVLSSD
PAKMKAAMGT MDYIIDTISA VHSLSPLLGL LKLNGKLVTV GLPNKPLEVP IFQIAAGRKL VGGSNFGGIK ETQEMLDFCG
KHNITANIEL IKMDQINTAM ERLGKGDVKY RFVIDVANSF SSL*