GBrowse Details

Vigan.01G072700.01

Basic Information:
Name: Vigan.01G072700.01
Multiple alignment
Variant Information
Position: Chr01:5800019..5803298 (- strand)
Length: 3280
Functional Information:
Description: Similar to RAB1Y. [Q40207, Lotus japonicus]
GO: Biological Process: GTP catabolic process (GO:0006184)
Biological Process: intracellular protein transport (GO:0006886)
Biological Process: nucleocytoplasmic transport (GO:0006913)
Biological Process: signal transduction (GO:0007165)
Biological Process: small GTPase mediated signal transduction (GO:0007264)
Biological Process: protein transport (GO:0015031)
Cellular Component: intracellular (GO:0005622)
Cellular Component: membrane (GO:0016020)
Molecular Function: GTPase activity (GO:0003924)
Molecular Function: GTP binding (GO:0005525)
InterPro: Small GTPase superfamily (IPR001806)
Ran GTPase (IPR002041)
Small GTPase superfamily, Rho type (IPR003578)
Small GTPase superfamily, Rab type (IPR003579)
Small GTP-binding protein domain (IPR005225)
Small GTPase superfamily, Ras type (IPR020849)
Small GTPase superfamily, ARF type (IPR024156)
P-loop containing nucleoside triphosphate hydrolase (IPR027417)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:21.10,17.08,22.13,14.19,19.30,23.79,20.19,23.25
Automatic updates:
Name: NM_001248507 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100526880 (LOC100526880), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:5800019..5800335 (- strand)
Length: 317
Type: three_prime_UTR
Position: Chr01:5800336..5800443 (- strand)
Length: 108
Type: CDS
Position: Chr01:5800823..5800951 (- strand)
Length: 129
Type: CDS
Position: Chr01:5802181..5802302 (- strand)
Length: 122
Type: CDS
Position: Chr01:5802590..5802655 (- strand)
Length: 66
Type: CDS
Position: Chr01:5802882..5802950 (- strand)
Length: 69
Type: CDS
Position: Chr01:5803040..5803175 (- strand)
Length: 136
Type: CDS
Position: Chr01:5803176..5803298 (- strand)
Length: 123
Type: five_prime_UTR

>Vigan.01G072700.01 class=Sequence position=Chr01:5800019..5803298 (- strand)
TTACAAATGA GAAATTCCTC GTTACATTTT TTTTTATTCA TCATGAACTG AAATAAATTG ATATTCTTAT TCTGTCGGCG
ATGAAGGGTT TTTTGATGCG TGTGATTGAT TCAGTTAAAT GCGATGGATT TGAGTTCGGG GCCTCAAGAA TTTGATTATT
TGTTCAAGTT GTTGATGATC GGAGACTCTG GGGTTGGCAA GAGTAGTCTT CTTCTCAGTT TCACCACTGA GGCTTTTGAA
GATCTTTCAC CCACAATTGG TCCTTTTATT TCTCCTTTGA CTTGTATATT ACAATAGCCA TTTATTTGCA CCTTTGCATC
TTATTTAAAT TGATGCTGCC TCCTGCAGGT GTTGATTTTA AGGTCAAATA TGTGACGATG GGGGGTAAAA AGCTTAAGCT
TGCAATTTGG GACACTGGTA TTCACATATA GTGCTATTTG TTGATTATTG TTTCGTTTTG TTTAAGCTAT TGCCTATTGG
TGCTGCTGAA TTCTAGACGT GGCAGTCATG GAGGATTTTT GCCTTGTTAG TGTTATTGAG GCCAATACCT TAATTGACCG
ACTCTGTTTT TTTTTTACAC ACACACACAC ACATATATAG AGATAGATAT ATGTATTTAT ATGTGTGTAT GTATGTAATG
CAGCTGGTCA GGAGAGATTC AGAACACTGA CAAGTTCTTA CTACCGAGGG GCACAAGGAA TCATCATGGG CAAGTTTCCC
GTTTCCATCT TTTGGCTTTC CCTCTTCCCC AATTCTGCTT TTACTGGACT TGGGGAAAAT GTGATTTACC TTGAATGAGA
ACCTGGATTG CAATGTATAT CTGATTTGTT GGATTTTTAT TCTCTAATTT GTGGATTCAC CATGAAAGGG CTGGATATCT
GATTAGGTGT AATGTGTTTG ATGGTCTTTG GACGGGAGGT GCCACTTCCA AGCTCATGTA GTGTTGAAAT TTGACTTTTG
AGTTAGCTGT TAATTTTGTT CCTCTAACTG ATACAGTTTA TGATGTAACC CGGCGAGATA CATTTACAAA TCTTTCTGAT
ATATGGGCAA AGGAAATAGA CCTTTATTCA ACAAATCCAG ATTGCATCAA GATGCTTGTT GGAAACAAAG TCGACAAGGT
ATCTTTATTT AAGAGGTTTA CGATCGTATG TTCCCATTAT ATAGTGTTGA ATTTCCATGC GTGAGTTGTT CCTAATCAAT
GTTATTCTGG TATAAGTCTC CTTCCTTCTT GAGACCTTGG ATTCCAATTC AATTCAAATA TTGAGGAAAT TTTTACACAG
AAAGCAACGT CGAATATATT TCACCACATT TATGTTTAAT GTTCAACACA TTTATGTTTA ATGTGTAAAG TGTCTTTGAA
CCAGTTTTTG TTCTTTTCAT TGTCGAGTTT TTCTGCAAGG GTAACGGGCA AATGCTTTTG CTACTGTCTG TTCTTTTCAT
TGTGTTCTAT GATGGGTTGT TAGTACCCTT GTTTTAATTA AAAGTTTCTT CCATTCCAAT TACACAGCGT AGTTTTTTTT
TCTTGTCATC CATTAGGGGT TGTGGGAGAT CTTTTATCGA CCAATGATAT TACTATTAGT GGAGTGTAAA TCTTACTTTG
TAAGACAATT TTATTAAGTT GAATGGGGCC AAAATTCAAA TTATAAAGAG TTTATCTCGG AGATTGTTGT TAGTTTATTG
GGTCACCCAC TCTTGGAAGA CTTCCTATCG GGGTCAGCCA CAGAGGTTCA GTCCTTCAAA CTTCGCACTC AAGATATTTA
GTTTTCGGTA TGAAGAGGTG TGTTGGATAC CTCACAAGAA TCAGTGATAT CTAGTTAGTG TAGGGGTGCA TGTCTCACTT
TACTAATTGA TTTTGTAAAG TTAAATTAGA TCTTAACTCA AATTATAGAA GGGTGTCAGC ATGTCTTTGT AGAGAAGTTT
CTATTACATA TTTACAAAGG GATTTGAGAG CTCTTTTGAT CTGAAGTAGT TGTCTTTATT TAATGTGTTT TATGGTTTTG
GTTCTTCTAG CATATTTGCT TGTCTTGAAG TAATGTTAAA AAATGACTGT TTGATATCAT TAGTGGAAAT TGTTTTGGAA
TGTACTAAAA CAAGATAAGG AGGCAGCTTT AATTAACTTA CTTCTTTATG GTATTTATTG AAATACAGAT CCTGAATTGC
GTGGACCCCA TTTTGGGCGC TTAGCTATAC TAATCTAGCT TAAGCTCTTG CAAGTATCGA GTTAGCTACG TGTCCTAATT
TTTTCTTGTT CTATCTTCTG CATCGTATCT TAGTTTTTAC TGAGTAGTGA TTGCTTGCAT TCAATTAGAG CGCTTGGATA
TGCATAATGG TGATATTTGT TTTTCAGGAG GGTGATAGAG TTGTGACAAA GAAAGAGGGA ATAGACTTCG CCAGGGAATA
TGGTTGCCTA TTTATTGAAT GCAGTGCTAA AACTCGAGTT AATGTTCAGC AATGCTTTGA AGAGCTTGTT TTGAAGGTAT
GCTAAGAAAC ACATACCCAT TTCCTAACAT TTGAGCAGTA ATCCGTGTTC TGCACAAATT CATTATGCAT GTAAAAATGT
TTCTATTATT TAAAAGGCTA TGGTAATTTT TGTCCTTACC CTTTCTATGT GTGTGATTTG AACACAAAAA TGTTTGATTC
ATATATATAG ATATTATAGA CACAAAAAAG TAGTTTTTTC ACAAGTTTAA TGGCTGACGA TATATAGATA TAATAGACAC
AGGTTGAGAA CTAAAGAAAA TTTGGTTTTA GGGGACACAT TCAAATTAAT TGCATTTTCT GAATTGTGAT GACCAATAGC
TGATGATGAC CATGGCGTTG CTTTGTTCTT TTTTTTTTTC CTTGAGTGTG TGCAGATTCT CGATACACCT AGCCTTTTAG
CTGATGGCTC AAAGGGCGTA CGAAAAAACA TTTTTAAGGA CAGGCCACCC CAATCTGATG CATCTACAAG TAGTTGTTGC
TGATTTGAAG AAGCTATTTC ACTAAAAAAC CTACATTTTA AGAATGAGGA TCTCAAAGAG AAGGGCTCTG CATCCATTTT
AAGAATCTGA ACATACTTTG CTGGTTGTCT AGGATCATAG GAAGCCATTT TTTTAAATTT CTTTTTTATT TTATTTTCAG
GTTCCTGTTT TGTCTTGAAT ATTCGATGTA ACCTAATGAT GATGGTTGGT TGTCTGCAAT TTTATTTTCT TTGTGGATTT
CTTGTTTGTC TGAGCGATAT TTAATCTCAT ATAGACGTTG AAATTTATAA AAGGGTCGTA GATCTGATAA TTTTTATAAA


>Vigan.01G072700.01
TTACAAATGA GAAATTCCTC GTTACATTTT TTTTTATTCA TCATGAACTG AAATAAATTG ATATTCTTAT TCTGTCGGCG
ATGAAGGGTT TTTTGATGCG TGTGATTGAT TCAGTTAAAT GCGATGGATT TGAGTTCGGG GCCTCAAGAA TTTGATTATT
TGTTCAAGTT GTTGATGATC GGAGACTCTG GGGTTGGCAA GAGTAGTCTT CTTCTCAGTT TCACCACTGA GGCTTTTGAA
GATCTTTCAC CCACAATTGG TGTTGATTTT AAGGTCAAAT ATGTGACGAT GGGGGGTAAA AAGCTTAAGC TTGCAATTTG
GGACACTGCT GGTCAGGAGA GATTCAGAAC ACTGACAAGT TCTTACTACC GAGGGGCACA AGGAATCATC ATGGTTTATG
ATGTAACCCG GCGAGATACA TTTACAAATC TTTCTGATAT ATGGGCAAAG GAAATAGACC TTTATTCAAC AAATCCAGAT
TGCATCAAGA TGCTTGTTGG AAACAAAGTC GACAAGGAGG GTGATAGAGT TGTGACAAAG AAAGAGGGAA TAGACTTCGC
CAGGGAATAT GGTTGCCTAT TTATTGAATG CAGTGCTAAA ACTCGAGTTA ATGTTCAGCA ATGCTTTGAA GAGCTTGTTT
TGAAGATTCT CGATACACCT AGCCTTTTAG CTGATGGCTC AAAGGGCGTA CGAAAAAACA TTTTTAAGGA CAGGCCACCC
CAATCTGATG CATCTACAAG TAGTTGTTGC TGATTTGAAG AAGCTATTTC ACTAAAAAAC CTACATTTTA AGAATGAGGA
TCTCAAAGAG AAGGGCTCTG CATCCATTTT AAGAATCTGA ACATACTTTG CTGGTTGTCT AGGATCATAG GAAGCCATTT
TTTTAAATTT CTTTTTTATT TTATTTTCAG GTTCCTGTTT TGTCTTGAAT ATTCGATGTA ACCTAATGAT GATGGTTGGT
TGTCTGCAAT TTTATTTTCT TTGTGGATTT CTTGTTTGTC TGAGCGATAT TTAATCTCAT ATAGACGTTG AAATTTATAA
AAGGGTCGTA GATCTGATAA TTTTTATAAA 

>Vigan.01G072700.01
ATGGATTTGA GTTCGGGGCC TCAAGAATTT GATTATTTGT TCAAGTTGTT GATGATCGGA GACTCTGGGG TTGGCAAGAG
TAGTCTTCTT CTCAGTTTCA CCACTGAGGC TTTTGAAGAT CTTTCACCCA CAATTGGTGT TGATTTTAAG GTCAAATATG
TGACGATGGG GGGTAAAAAG CTTAAGCTTG CAATTTGGGA CACTGCTGGT CAGGAGAGAT TCAGAACACT GACAAGTTCT
TACTACCGAG GGGCACAAGG AATCATCATG GTTTATGATG TAACCCGGCG AGATACATTT ACAAATCTTT CTGATATATG
GGCAAAGGAA ATAGACCTTT ATTCAACAAA TCCAGATTGC ATCAAGATGC TTGTTGGAAA CAAAGTCGAC AAGGAGGGTG
ATAGAGTTGT GACAAAGAAA GAGGGAATAG ACTTCGCCAG GGAATATGGT TGCCTATTTA TTGAATGCAG TGCTAAAACT
CGAGTTAATG TTCAGCAATG CTTTGAAGAG CTTGTTTTGA AGATTCTCGA TACACCTAGC CTTTTAGCTG ATGGCTCAAA
GGGCGTACGA AAAAACATTT TTAAGGACAG GCCACCCCAA TCTGATGCAT CTACAAGTAG TTGTTGCTGA 

>Vigan.01G072700.01
MDLSSGPQEF DYLFKLLMIG DSGVGKSSLL LSFTTEAFED LSPTIGVDFK VKYVTMGGKK LKLAIWDTAG QERFRTLTSS
YYRGAQGIIM VYDVTRRDTF TNLSDIWAKE IDLYSTNPDC IKMLVGNKVD KEGDRVVTKK EGIDFAREYG CLFIECSAKT
RVNVQQCFEE LVLKILDTPS LLADGSKGVR KNIFKDRPPQ SDASTSSCC*