GBrowse Details

Vigan.01G072600.01

Basic Information:
Name: Vigan.01G072600.01
Multiple alignment
Variant Information
Position: Chr01:5796562..5799502 (- strand)
Length: 2941
Functional Information:
Description: Similar to Os12g0189700 protein. [Q2QWN1, Oryza sativa subsp. japonica]
GO: Molecular Function: protein binding (GO:0005515)
InterPro: Tetratricopeptide-like helical (IPR011990)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:13.71,2.03,2.40,16.47,1.90,7.56,2.02,2.25
Automatic updates:
Name: NM_001250345 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100500132 (LOC100500132), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:5796562..5796765 (- strand)
Length: 204
Type: three_prime_UTR
Position: Chr01:5796766..5797173 (- strand)
Length: 408
Type: CDS
Position: Chr01:5799006..5799446 (- strand)
Length: 441
Type: CDS
Position: Chr01:5799447..5799502 (- strand)
Length: 56
Type: five_prime_UTR

>Vigan.01G072600.01 class=Sequence position=Chr01:5796562..5799502 (- strand)
ATCGTTTCTT AACCATTGAA TATTTATTTG ATAAGGAGTC CAAAATATCT GATCTCATGC GCATAATTCA CTTCAGTTAT
GGTTTCAGAG ATTCCTTATT TTGGTTCCTA ACTCAAAAAA CAACTATGGC GGGTGCATGC AGCAGAGCAC CCATTTCCCA
TCTTCCTCTG CGGAACCCCA AAACCAGAAT CTATAATTCT CAGAGCAGAG TTCTTCAACA TCCAAATAGG CGTTTGTTCC
TCTTCTCTCT GCCCCTGTCT AGTTTCGTTC TCCTTCCCGT TCCCAGCTTT GGTGATGGTA ACGGTGCAAT TGATAAATTT
CAACATGGGT CTTCTTCCTC ATACGCTGCC ACAATGTATG ACCCTCTAAG TGCTGCTGAA AGAGAAGCAA GTGCTTTAGT
TTCACAGAGA GTCTCTCAAG CAGTGGATTT GTTGGAGAAA GGGAGGGAAT TGCAGGCTCA GGGAGACTTT GCTGCTGCTC
TTGGTTACTT TTCTCAGGTA ATGAAGTGCA CTTATTTAGC TACGCTTTCT TCTTTCATTT CCAATCTACT CGTAATATTA
TATGGGTTAG GGTTCGTCTT CAGATTTAAT CTGTATTCAT CAAAAGTTAT TTATTTGAGT ATTTTTTTAT TATTGTCTTA
CATACTAAGA AGGGATAAAA ACAAATAACG TTTTGAAAAC TATTTAATTT CTATACATTA TCAGAAACAA TATCGTGGTA
TTACGACTTT TAAAGAAAAA ATCAATAAAT TTATTATGCA TTACAACCTC TGATTAGATA GCACAGTGTA CAGACTATTT
ATTGAGTAAA ATGTCTGTAC TTCTTGATAA CTAATTTATA TTACTCCATT TAGGTTGTTG CGTTTGAATT TCAGAGTAGT
GATGAGTCTG AAGATGATCT CAGGCTTTCC ATAAAATTCG CTGATGGATT ATGATAGGAC TGCTCCTGTT CTTTATTTAT
CTTCTTTTAA TGAGAAAAAA AAAACATATT GAGATTTCCC TGAAATGTGT GTTCTCTTTA AGATTGAGTT GTATCTTTTT
TATTTGATCA GCAAGATTGA ATTGTATCTG TCTTGGCTGA TCAAAACCTC AATTGGGAAA TGAACTATTT GAACGAAAAA
TCAGGGTATC TCCGGTAAAG TTTTGCAGCT AGTAATGCTA ATACCAACAA CAAATACTTT TTTTGAAAGT TAAAAATATC
CTCTTATTGT TCAACTTTGT TGATTTTTTA TCTAAGTATA TGATCATGTT GTTTAGTTAG CGTAGCAGTG ACATTGATCA
TTAGATGATT GATGTAGTCT CAGTTACAAC TTACGACATC ATTTGCATGA AATGTAAATA GGTCACTTTG TCACATTCTA
TGAATGACAA CTCCATATTT GTAAATTTGA AGAGTGAAAT AATAGATGAG ATTACTTTCA CGTACACACT GGAAATGGAA
GGCAAGGCAA TTATTTATAT GATTGGGTTA TTCTAGGTTC ATTTTGGAAA CTGAATATGC CAGCCATATT TATTTATACG
GAGTATAGAG AAGTAAAGGA TTGGTCATAG CTTCATAGTT ATATTATATT TGATCTGCCA CTCTAGGCCA TGCTACGCAG
TGGCTTTTGA AACATGACCG TTGCACCATG TAGGCATCAT GTGGTTTCAC TATACTCCTG ACAGATTCAA ATTTTAATGT
TGGAACAGAA AACAGAAAGG ATATCGAATT GGAAGCAAGG CAAATGTACC ATACAATCTC AATTTCATGA AGTACTTATA
ATAGATTGAG TATCGTGCAA AATTCATACC AAGAATAGGA AATTAGAAGA GTTTAGTTTG AAACAAATGC AGTATTGTTA
TGTTGATGGC AGGTTTGCCG TACCTTCTTC CTTCACCTAC TAAACCTGGT AAAAGTGAGC TTTGCACAGG CTTGACGGAG
TGAAGGACTC CAATCAAGTT CATAGAAGCT CACTTAATGA CACCGTCAGA TTTCTCTTTA GTTCAAGACC TCATTAACAT
TCCAAGCTTA AGATATTGCG TATCATCAAC TCATCTACCT TGCTACTTCA TTCAGCTAAT TTATATTTGT TGCCTCAACC
TGGGCTATTT CGTGGCATCA CAAATCACAT TCTAAGTTTC AACAAGTTTA TTCTCATACG CTGTAATCTG ATATACATTA
TTAGAAATAT AGTTAGTGGA GATAGAGGTC GGTTAGCATT GTTGGCTTAT TAGTATAAAC TCCCCCCTAT GCATTCCAAA
TAATACAATT TCATAATTCT CTCAATTATA TTCTTCTTCC TTGAACTGTG TCATGTTTCT TAACATACTT CCCAGCCTGT
TATTTTCAGG TTGTTGAAAG CTACAAAGAC TTGGCATTCT CAGAGTATGC AAGGGTAGGA AGGGCATTGG CCCTGTATGA
AGTTGGTGAC AGAGAAGAAG CAATTGCAGA GATGGAGGAC GTTTCAATAT CCCTAAAAGG ATATCCAGGT ATATTCGTAG
AATTTTTGCA CTTCATGGTC ACGCTACAAA TGGAAAACTC TCACTTTTCT CTAATCCAAC ATCCCTCTGC AGAAATACAT
GCAGCTCTTG CGGCAGCCTT ATATGCAGAT AAACACGCCG CATTGCTTGC TGAAAACCAG TTTGCCATTG CAACTCTTCT
TGATCCCCAT TTTACAGACA TTTCATATGT TAGAGACACA AAGCACTGGC CTCCAAGTTT GATCAGTTCT CTGCAGAACT
TCATCACACT GTCTTAAGAC CTCACAATAT TGATACGTTT TGGTTAACCC ATACTAAGCG CCAACTATAT AAAAGCAAAA
AGTTGAAGCC GACTAATAAT TTTGATTAGG GTGTTCATAT CTTGTAATTA ATGATATATA TCACTTTAGT AACCAAATTG
TCATTTGAGT GATATATATT AATATCAAAA TATTGTTACA AGTAAAGCTT TATATTCTTC G

>Vigan.01G072600.01
ATCGTTTCTT AACCATTGAA TATTTATTTG ATAAGGAGTC CAAAATATCT GATCTCATGC GCATAATTCA CTTCAGTTAT
GGTTTCAGAG ATTCCTTATT TTGGTTCCTA ACTCAAAAAA CAACTATGGC GGGTGCATGC AGCAGAGCAC CCATTTCCCA
TCTTCCTCTG CGGAACCCCA AAACCAGAAT CTATAATTCT CAGAGCAGAG TTCTTCAACA TCCAAATAGG CGTTTGTTCC
TCTTCTCTCT GCCCCTGTCT AGTTTCGTTC TCCTTCCCGT TCCCAGCTTT GGTGATGGTA ACGGTGCAAT TGATAAATTT
CAACATGGGT CTTCTTCCTC ATACGCTGCC ACAATGTATG ACCCTCTAAG TGCTGCTGAA AGAGAAGCAA GTGCTTTAGT
TTCACAGAGA GTCTCTCAAG CAGTGGATTT GTTGGAGAAA GGGAGGGAAT TGCAGGCTCA GGGAGACTTT GCTGCTGCTC
TTGGTTACTT TTCTCAGGTT GTTGAAAGCT ACAAAGACTT GGCATTCTCA GAGTATGCAA GGGTAGGAAG GGCATTGGCC
CTGTATGAAG TTGGTGACAG AGAAGAAGCA ATTGCAGAGA TGGAGGACGT TTCAATATCC CTAAAAGGAT ATCCAGGTAT
ATTCGTAGAA TTTTTGCACT TCATGGTCAC GCTACAAATG GAAAACTCTC ACTTTTCTCT AATCCAACAT CCCTCTGCAG
AAATACATGC AGCTCTTGCG GCAGCCTTAT ATGCAGATAA ACACGCCGCA TTGCTTGCTG AAAACCAGTT TGCCATTGCA
ACTCTTCTTG ATCCCCATTT TACAGACATT TCATATGTTA GAGACACAAA GCACTGGCCT CCAAGTTTGA TCAGTTCTCT
GCAGAACTTC ATCACACTGT CTTAAGACCT CACAATATTG ATACGTTTTG GTTAACCCAT ACTAAGCGCC AACTATATAA
AAGCAAAAAG TTGAAGCCGA CTAATAATTT TGATTAGGGT GTTCATATCT TGTAATTAAT GATATATATC ACTTTAGTAA
CCAAATTGTC ATTTGAGTGA TATATATTAA TATCAAAATA TTGTTACAAG TAAAGCTTTA TATTCTTCG

>Vigan.01G072600.01
ATGCGCATAA TTCACTTCAG TTATGGTTTC AGAGATTCCT TATTTTGGTT CCTAACTCAA AAAACAACTA TGGCGGGTGC
ATGCAGCAGA GCACCCATTT CCCATCTTCC TCTGCGGAAC CCCAAAACCA GAATCTATAA TTCTCAGAGC AGAGTTCTTC
AACATCCAAA TAGGCGTTTG TTCCTCTTCT CTCTGCCCCT GTCTAGTTTC GTTCTCCTTC CCGTTCCCAG CTTTGGTGAT
GGTAACGGTG CAATTGATAA ATTTCAACAT GGGTCTTCTT CCTCATACGC TGCCACAATG TATGACCCTC TAAGTGCTGC
TGAAAGAGAA GCAAGTGCTT TAGTTTCACA GAGAGTCTCT CAAGCAGTGG ATTTGTTGGA GAAAGGGAGG GAATTGCAGG
CTCAGGGAGA CTTTGCTGCT GCTCTTGGTT ACTTTTCTCA GGTTGTTGAA AGCTACAAAG ACTTGGCATT CTCAGAGTAT
GCAAGGGTAG GAAGGGCATT GGCCCTGTAT GAAGTTGGTG ACAGAGAAGA AGCAATTGCA GAGATGGAGG ACGTTTCAAT
ATCCCTAAAA GGATATCCAG GTATATTCGT AGAATTTTTG CACTTCATGG TCACGCTACA AATGGAAAAC TCTCACTTTT
CTCTAATCCA ACATCCCTCT GCAGAAATAC ATGCAGCTCT TGCGGCAGCC TTATATGCAG ATAAACACGC CGCATTGCTT
GCTGAAAACC AGTTTGCCAT TGCAACTCTT CTTGATCCCC ATTTTACAGA CATTTCATAT GTTAGAGACA CAAAGCACTG
GCCTCCAAGT TTGATCAGTT CTCTGCAGAA CTTCATCACA CTGTCTTAA

>Vigan.01G072600.01
MRIIHFSYGF RDSLFWFLTQ KTTMAGACSR APISHLPLRN PKTRIYNSQS RVLQHPNRRL FLFSLPLSSF VLLPVPSFGD
GNGAIDKFQH GSSSSYAATM YDPLSAAERE ASALVSQRVS QAVDLLEKGR ELQAQGDFAA ALGYFSQVVE SYKDLAFSEY
ARVGRALALY EVGDREEAIA EMEDVSISLK GYPGIFVEFL HFMVTLQMEN SHFSLIQHPS AEIHAALAAA LYADKHAALL
AENQFAIATL LDPHFTDISY VRDTKHWPPS LISSLQNFIT LS*