GBrowse Details

Vigan.01G050600.01

Basic Information:
Name: Vigan.01G050600.01
Multiple alignment
Variant Information
Position: Chr01:3783267..3787131 (- strand)
Length: 3865
Functional Information:
Description: Similar to Hydroxyproline-rich glycoprotein family protein. [V5NAU3, Phaseolus vulgaris]
InterPro: Uncharacterised protein family Cys-rich (IPR006461)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:18.88,6.74,54.14,39.09,84.84,73.29,55.50,53.32
Arabidopsis thaliana homolog: AT1G63830.2, AT4G23470.1
Automatic updates:
Name: NM_001250406 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100306088 (LOC100306088), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:3783267..3783524 (- strand)
Length: 258
Type: three_prime_UTR
Position: Chr01:3783525..3783797 (- strand)
Length: 273
Type: CDS
Position: Chr01:3783881..3783899 (- strand)
Length: 19
Type: CDS
Position: Chr01:3783993..3784117 (- strand)
Length: 125
Type: CDS
Position: Chr01:3784225..3784320 (- strand)
Length: 96
Type: CDS
Position: Chr01:3785479..3785560 (- strand)
Length: 82
Type: CDS
Position: Chr01:3785660..3785716 (- strand)
Length: 57
Type: CDS
Position: Chr01:3786634..3786655 (- strand)
Length: 22
Type: CDS
Position: Chr01:3786750..3786849 (- strand)
Length: 100
Type: CDS
Position: Chr01:3786850..3787131 (- strand)
Length: 282
Type: five_prime_UTR

>Vigan.01G050600.01 class=Sequence position=Chr01:3783267..3787131 (- strand)
TGTAGTTACA GTCTTAGTTG GCTTACGCGG GGTCACTACA GCTATGATGG GGGAATGAAG CAAAGAGTCC ATAGACCAAT
AGAAGTTTAG TGAGCTGTTT CAAGCTTCAA CGCCCCAGAA CTACGCCTAT AATCTTTTCT TATCCCTCTT ACTTTTATCT
CTTTCATTTC CTTCTCAAAC GCTACGAGAT TTCGTCATCC CTGTTATATC TCGTGACGCA TTTCCCCAAG TATCTGATCT
AGGGTTTTTC ACACTGTGCT CGAGAAGAAG AAAACAATCG TCATGGCGTC GCAGGAGCAC ATCGAGAAGA TGCAGGCACG
CCAGAATTTC CGGAATCTAT GGCACACCGA TCTCATGCGT ACCATTCAGG CCGATACTCC TTGTAAGGAA TTCCTCACTT
TCTCTTTCTC TTTCACTTTT CCAATTTCGC TTTTAATCTT TATACTCATG TCGTCTCAAC TCTTGATTTT GCGCAGATTG
TTGCTTCGCG CTGTGGTGGT ATGTGATCTG GAACTTTCTT CTACCTAATC GATGTTTTTT TGTCAAATCT GCTTCTCTGG
ATCTATTGAG TGTTCTTTTT GCTTTATTTT TTCCTCGATT GGACTCGGAA ACAAATCTTT CATTTTCAAT TTCGCTGTTT
ATTGTATTCG ACTTGTAGAT CCAGGATTGA CGTTGACTTG CATTGACCGA CGAAGTATTT TAGATTCTGC TTAAAATAGT
TTCCACGCTC TGTTCTAATT GATCGGTGTT ATTATTTGTT TAACTGTGTA CTTTTAAAGT TATGTGGATC TGATGAAGAA
AACATGAAAT GCATTCGTAT TCTTGTTGAA GGGCATGGAC ATACTATGCT TATTCCGAGT GGTGTAAGAT TTTCCTGAAG
TGACAAAAGA GTTGGTGCAC AAAAAATGAC TGTAGGGAAG CGTGTTCTCA TGTTCTATCT TTGGGTAAAA TAGTATCTTG
ATGGTTGTAG GAATCTGACC TCTTTCAGTA TCTTATACTG GGTGGAGGGG TTCTTATTTG CTAAACCTCC ACAACAGAGG
AAGGGTTGTA TGAGAATTCA ATCAATCTAA CAGGTTATAC AGAGTGAGAT GGTATTGAAT AAAGTATTAT GGGAAATATT
TCATACTGCG TCGATTGATA AATTCTGAGA TCTTTATTTT GGCTGTGTAT TATTGCACAC TAGTTTTGTA TCCCCAGGGA
AACAAATGTT TCATACTGCG TCGGTTGATA AATATTGTGT ATTATTGCAC ACTAGTTTCT GCAGATTTTT TGAGCCTATA
AACTTCATGA ATCTGTTTTA TATCCACAAC AATCCACTCT TAGTTGGATC ACAATTTTAG CTGGTCTACA TTTTAGGCAT
GAAGTGAATT TATATTCTGC AGTAATTAAT CTAATTTTCT TTTGTCCCAT CATAGTGCAC CGTGTGTGTC TTATCTTCTT
CGCAAACGAG CTCTTTATGA TGACATGTCA AGGTAATTGA TTGATACTAT TTCTGTTTTT TCCAACATTC CAAAATAATT
TTTTTATAGA GTCTGTTTTT GTGATATATC TGTCGAATTA TTTTTTTCCA GATACACATG TTGTGCTGGT TACATGCCCT
GCAGTGGTAG GTGTGGAGAA AGTAAATGTC CTGAATTTTG CCTTTGCACT GAGGTATAAA AATGTGAACC TATTTTTCCT
TACTTTTATT TGTACCTGGT ATTGTGTCGG CATTTCATCT CTCCCTATCA GTCTGTTTGG CTGTGATGCC TTAACCATTG
CATGGTATTA GTCCAAGTTT ATAACACATA ATGGTATATC ACATGTAGTA ATTGTCGAAG ACTTGAAATA TGATTTAGGT
ATGGATTAGT GGAAAAATAA AACGCATAGC AGGATTTTAT GGTTAGGCTA ATAAATTGTT TCCAACTTTT GAGAGTAGCT
TCGTTACTAC AGTTATCTTG TTGAGTTTGA AATCATGAAT GCGAGGTTTG ATAAAAATGA TTAACTCTTC ATGATGAAGG
GTAAAAAGGG TGGGTTAAAC TGTTTAACCA TCAAATGAAA ATCGGTTGAT CTCTCCTAGT TATGTAGTGA AGCTAGGCAC
TATGCAGATT TTAGATGCAG CTTTACTAGC AGTAAAGGTA GTTAAATATT GAGGTTGAAT TGATCTATTT ACTGTTCAGG
ATTTTTAATT TAAACTTTAT AAATTTGAAG ATCCATTGAA AAAAAATTTT AATTGGACCT TACTGTCTAT TGGTCATTAT
CCAGTTAGAA AATTTTGAAA CTCTGGGGAA ACAGTTCCAG ACTTATAACA TTGCGAAAAT TTAACCAAGA TTTTAAAATA
AGGACGCTCG AGGTTTTAAA GCTGGTTTTG AAAACGTTTA TGATCAATGT CTTACACGGT TTTAGTAGCA ATGTCCTTCA
GAAAGGAAAA TGTGGACCCA GTGGTGTGTC ATTGTTAATG ATGAACTGAA GCCTTTGTTA TCGTCGAGAA GGACTTAGGA
AGGGGTGGGA GTACTAAGTA AGCTCTTGAT TCCAATTTTT AAGTTAAACG ACAATTCATG TATTCGTTAC TGTTTTTTTC
ATTGTAAGTT GTTGAGTTAT TGTATAGTTG AAGAGATTGA AAATGTACCG AAACTAGATT TAGAGCAAAA ACTAACTGCT
TTATTTAAAC ATTGGGTGTT TGAAAATGGC GTTTTGAACA ATTATAAATT GTTATTTGCA ATTAAATAAA TGTCACGCAG
GATTAATTTG GAGATTGAAT TTTGGGTGTT GAATTGTGTG ATTGTTACAT ATAGCAAGCT ATATTTATTG ATGTGTGTAT
CGTTGTTTCA GGTTTTCCTC TGCTTTGGAA ACTCAGTTGC CTCAACTCGC TTTCTTTTGC AAGATGAATT TAACATTCAA
ACAACGCAAT GTGATAATTG CATTATTGTA CTTTCTCTCT CTCTCTCTCT GTTTTTCTCT GCATTCACGG CCAAATACTT
GCAATTTTTT TTTTCAATGA TATTCAGTTA ATTACATGTA ACTCTTCTTT TTAGGGTTTC ATGTTTTGCC TTCAACAAAT
TGCATGTATA TTCTCTATTG TTGCGATGAT TGTTGGAAGC GAGGAAATTC AAGAGGCTTC TCAGTTGCTA TCTTGTTTGG
CTGACTTTGT GTACTGCACG TAAGGCTTCC TCTTCTCTCT CAAGTTTCAA TTAATTGTGC ACATTATATT GGAAGGAGTT
TGTACTAAAT TTATTCTTCT GTTTATTTGT AGGGTCTGTG CATGCATGCA GGTAAGTTTG TTAATTATAT CTGACGTGGT
TAGTCACGAT GTGGTACGCA TGAAAATTGT CACTTGAGGA AATTTTGTTT GCAGACTCAG CACAAGATTG AAATGGACAA
GCGTGATGGG AAATTTGGAC CCCAACCAGT AATGTCAGTG CCCCCTGTTC AGCAGATGTC ACGCATTGAT CAGCAAGTTC
CTCCTTCTGT TGGGTATGCA CCACAACCAG CTTATGGACA GCCCTATGGT TATCCACCTG CCCCACCACC TTCTCAAGGA
TACCCAGCTC CTGGATACCC CCCGACTGGT TATCCCCCAG CTGCCTATCC TCCACCAGGG TACCCCCCAT CTGGCTACCC
TAAGTGATTA CTTTACCTGC CATTGTATTC TCTACACCGC TAATTGATTG GTTCATAAAA CAATCGCACA TGTTTCTGGT
GAAATGCAAT AGTTCCATCT CATCTGTTAA TTATTCTGCA TTTCCCATTA CAAGTTTTTT TGTGACTTGA CACATTATAA
TTCCTGTCGT ACTTCTATTT TGTATATTCT TCTCGTTGGT GTTCATAAAT AGTTAACTTT CACTTGTTAT GTGCAATATA
CCGGTATAAT ATGCACTTTT CCAAA

>Vigan.01G050600.01
TGTAGTTACA GTCTTAGTTG GCTTACGCGG GGTCACTACA GCTATGATGG GGGAATGAAG CAAAGAGTCC ATAGACCAAT
AGAAGTTTAG TGAGCTGTTT CAAGCTTCAA CGCCCCAGAA CTACGCCTAT AATCTTTTCT TATCCCTCTT ACTTTTATCT
CTTTCATTTC CTTCTCAAAC GCTACGAGAT TTCGTCATCC CTGTTATATC TCGTGACGCA TTTCCCCAAG TATCTGATCT
AGGGTTTTTC ACACTGTGCT CGAGAAGAAG AAAACAATCG TCATGGCGTC GCAGGAGCAC ATCGAGAAGA TGCAGGCACG
CCAGAATTTC CGGAATCTAT GGCACACCGA TCTCATGCGT ACCATTCAGG CCGATACTCC TTATTGTTGC TTCGCGCTGT
GGTGTGCACC GTGTGTGTCT TATCTTCTTC GCAAACGAGC TCTTTATGAT GACATGTCAA GATACACATG TTGTGCTGGT
TACATGCCCT GCAGTGGTAG GTGTGGAGAA AGTAAATGTC CTGAATTTTG CCTTTGCACT GAGGTTTTCC TCTGCTTTGG
AAACTCAGTT GCCTCAACTC GCTTTCTTTT GCAAGATGAA TTTAACATTC AAACAACGCA ATGTGATAAT TGCATTATTG
GTTTCATGTT TTGCCTTCAA CAAATTGCAT GTATATTCTC TATTGTTGCG ATGATTGTTG GAAGCGAGGA AATTCAAGAG
GCTTCTCAGT TGCTATCTTG TTTGGCTGAC TTTGTGTACT GCACGGTCTG TGCATGCATG CAGACTCAGC ACAAGATTGA
AATGGACAAG CGTGATGGGA AATTTGGACC CCAACCAGTA ATGTCAGTGC CCCCTGTTCA GCAGATGTCA CGCATTGATC
AGCAAGTTCC TCCTTCTGTT GGGTATGCAC CACAACCAGC TTATGGACAG CCCTATGGTT ATCCACCTGC CCCACCACCT
TCTCAAGGAT ACCCAGCTCC TGGATACCCC CCGACTGGTT ATCCCCCAGC TGCCTATCCT CCACCAGGGT ACCCCCCATC
TGGCTACCCT AAGTGATTAC TTTACCTGCC ATTGTATTCT CTACACCGCT AATTGATTGG TTCATAAAAC AATCGCACAT
GTTTCTGGTG AAATGCAATA GTTCCATCTC ATCTGTTAAT TATTCTGCAT TTCCCATTAC AAGTTTTTTT GTGACTTGAC
ACATTATAAT TCCTGTCGTA CTTCTATTTT GTATATTCTT CTCGTTGGTG TTCATAAATA GTTAACTTTC ACTTGTTATG
TGCAATATAC CGGTATAATA TGCACTTTTC CAAA

>Vigan.01G050600.01
ATGGCGTCGC AGGAGCACAT CGAGAAGATG CAGGCACGCC AGAATTTCCG GAATCTATGG CACACCGATC TCATGCGTAC
CATTCAGGCC GATACTCCTT ATTGTTGCTT CGCGCTGTGG TGTGCACCGT GTGTGTCTTA TCTTCTTCGC AAACGAGCTC
TTTATGATGA CATGTCAAGA TACACATGTT GTGCTGGTTA CATGCCCTGC AGTGGTAGGT GTGGAGAAAG TAAATGTCCT
GAATTTTGCC TTTGCACTGA GGTTTTCCTC TGCTTTGGAA ACTCAGTTGC CTCAACTCGC TTTCTTTTGC AAGATGAATT
TAACATTCAA ACAACGCAAT GTGATAATTG CATTATTGGT TTCATGTTTT GCCTTCAACA AATTGCATGT ATATTCTCTA
TTGTTGCGAT GATTGTTGGA AGCGAGGAAA TTCAAGAGGC TTCTCAGTTG CTATCTTGTT TGGCTGACTT TGTGTACTGC
ACGGTCTGTG CATGCATGCA GACTCAGCAC AAGATTGAAA TGGACAAGCG TGATGGGAAA TTTGGACCCC AACCAGTAAT
GTCAGTGCCC CCTGTTCAGC AGATGTCACG CATTGATCAG CAAGTTCCTC CTTCTGTTGG GTATGCACCA CAACCAGCTT
ATGGACAGCC CTATGGTTAT CCACCTGCCC CACCACCTTC TCAAGGATAC CCAGCTCCTG GATACCCCCC GACTGGTTAT
CCCCCAGCTG CCTATCCTCC ACCAGGGTAC CCCCCATCTG GCTACCCTAA GTGA

>Vigan.01G050600.01
MASQEHIEKM QARQNFRNLW HTDLMRTIQA DTPYCCFALW CAPCVSYLLR KRALYDDMSR YTCCAGYMPC SGRCGESKCP
EFCLCTEVFL CFGNSVASTR FLLQDEFNIQ TTQCDNCIIG FMFCLQQIAC IFSIVAMIVG SEEIQEASQL LSCLADFVYC
TVCACMQTQH KIEMDKRDGK FGPQPVMSVP PVQQMSRIDQ QVPPSVGYAP QPAYGQPYGY PPAPPPSQGY PAPGYPPTGY
PPAAYPPPGY PPSGYPK*