VIGGS:GBrowse

Vigan.01G048400.01

Basic Information:

Name:	Vigan.01G048400.01 Multiple alignment Variant Information
Position:	Chr01:3543319..3545172 (+ strand)
Length:	1854

Functional Information:

Description:	Similar to Uncharacterized protein. [I1KPF9, Glycine max]
InterPro:	LURP1-like domain (IPR007612)
InterPro:	Tubby C-terminal-like domain (IPR025659)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:17.00,12.54,3.19,3.05,15.64,7.03,1.92,3.58
Arabidopsis thaliana homolog:	AT5G41590.1

Automatic updates:

Name:	NM_001252797 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max protein LURP-one-related 17-like (LOC100782098), mRNA.
PubMed ID:	-
Status:	Known Variant

Name:	NM_001317587 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max LURP-one-related domain-containing protein (LOC100796827), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr01:3543319..3543657 (+ strand)
Length:	339
Type:	five_prime_UTR

Position:	Chr01:3543658..3543945 (+ strand)
Length:	288
Type:	CDS

Position:	Chr01:3544378..3544776 (+ strand)
Length:	399
Type:	CDS

Position:	Chr01:3544777..3545172 (+ strand)
Length:	396
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

>Vigan.01G048400.01 class=Sequence position=Chr01:3543319..3545172 (+ strand)
TGGGTCCTAG AGCGTGTAAC TTTTGATAAA GACACATCAA CATTCTCGTC CCACACTAGC CTCCAAAAAG TTGCTGTGTT
CTTCTAAGTG CTGATTAACC CGTATTGTCG CCCTTGGCTT TGCACTAGAA GCAGAATTAA GACCAACTCC ATCACCTATT
TTATTGTTTG AAAACGTGGC CACATATTGG AAGTCGTGTG AACGCGTAGT ATACCTTGTT GTAGCTCTAT ATATATATAA
TACTACCCCT AAGAGGTTAC ATATATTCCG CCGAACCATT ACTGACAGTG TTAACCTCAG ACTGAAGAAA ATACAAGTAG
AAAGAGTTGG AGCAAGATCA TGAGGGTGTT TCCCAGGTTC AAGTTTCTGT CACGAGCAGT GCACGAGGAA CACGAGGGTG
AGCATGATGG GGAGAGAAGC AGGTACCCTT TAACGGAAGG AAGCTTGTGC ACGTCCTTAA CGCTAACAGT TTGGAAAAAA
TCCCTAGTGA TTAGTTGTAA AGGGTTCACC GTCATTGATT CGTATGGAAA CCTTGCTTAT AGGGTTGACA ATTACATCGG
GCACCCCAAT GAAGTCATTC TTATGGACGC TTCAGGAAAC TCTGTCCTCA CTCTGCGCCG CTCCAGGGTA TGCATGCCTT
CCCCTTCATC TTTCTTTCTA TGCTTTAATG CATAAGTTGT TCAATTTCTC TGTACAAGAC TTTCAAGATC GAAGCAGATG
AAAATGTGAT AAAGTTGCAA TTTTGTAGCT GGTGAAAACT CTTTATAAAC AAATGGGATA CGACCATTAT TGCACTGTTT
GCACTAACTA TAATATGCGG ATGGTGGTTC TTTGTTAATT ATGTAAAATG GTACCTGTGG TTTGTAAAAG AATTTAGTTA
AAATGTACTA TCAGCACGAT TTTGTTGTGC ACACGTCTAA TCATAGATCT GTTTGAAGTA ATTTCTGATG AATTTAGGAG
TGTAAACATC AAATACGATT GGTTGATGGT TGATGCCATT AAGAATTAAA TAATTTAAGA TGGTATTGTA GATGACATGT
TGATTTTGTT TGATTGCAGA AGCTGGGATT AGTAGATAGC TGGTTTGTGT ATGAAGGGGA AAGAGGGAAG CAGGGTACGA
GAAGTAAGTG GAGTAAATCG AATAACAGTC CAGTTTGTTG TGTAAGGAAG CGTGTGAATA TTTTAGACGG CAAGCCCAAG
GTTCAGGCCT ACGTGTATCG TGTAGCATCG GACTCAGATA AACGACATGC GGCATTCACA GTTGAAGGTT CCTATGCACA
TAGGACATGT AAAGTGTTCG ATGAGTGCAA GAAGGCTGTG GCTGAAATCA AGAGAAAGGA GGCCAATAGC AAAGACGTCT
CTTTCGGGAT AGAGATTTTT CAATTGGTTG TTCACCCTGG CTTTGATCCT AGCTTTGCCA TGGCACTCGT TTTACTACTG
GATCAAATGT TTTCGTAATA TTCTCCTAGA GTAACACGTT TCTTGTTTCT ATATCCACTA CCATTTTACT CCAAAGGCAT
TGTAAATTAC AAGAGATGTT TATAAAACGA AAAAGACAAT TGACGTAGTC AACTATTTAC AGTGTGTTTA ATTTCGTGTT
TAGGAACAAT GAACGCACGT CAAGCAAGAA GCTAGACAGA GCAGCGTTCA CGTTTTATTT GGTTTGAGGT GGAAAACCGC
TGTCACGTAC ATTCACAACG TGGAATCAAA GATGGCTTAA CCTGTCAAAT TATATCTTAC GAATGGGAAT TCATTTCTTA
CTTGTGCTTC ACAAGAGACT GATGAGTATA CAAACAGTTC AAATCGTCGG AGACTTCGTC CTCCCTATAA ATAAATGCCT
TAAAAGTTAA ATAG

[show][hide][copy]TRANSCRIPT

>Vigan.01G048400.01
TGGGTCCTAG AGCGTGTAAC TTTTGATAAA GACACATCAA CATTCTCGTC CCACACTAGC CTCCAAAAAG TTGCTGTGTT
CTTCTAAGTG CTGATTAACC CGTATTGTCG CCCTTGGCTT TGCACTAGAA GCAGAATTAA GACCAACTCC ATCACCTATT
TTATTGTTTG AAAACGTGGC CACATATTGG AAGTCGTGTG AACGCGTAGT ATACCTTGTT GTAGCTCTAT ATATATATAA
TACTACCCCT AAGAGGTTAC ATATATTCCG CCGAACCATT ACTGACAGTG TTAACCTCAG ACTGAAGAAA ATACAAGTAG
AAAGAGTTGG AGCAAGATCA TGAGGGTGTT TCCCAGGTTC AAGTTTCTGT CACGAGCAGT GCACGAGGAA CACGAGGGTG
AGCATGATGG GGAGAGAAGC AGGTACCCTT TAACGGAAGG AAGCTTGTGC ACGTCCTTAA CGCTAACAGT TTGGAAAAAA
TCCCTAGTGA TTAGTTGTAA AGGGTTCACC GTCATTGATT CGTATGGAAA CCTTGCTTAT AGGGTTGACA ATTACATCGG
GCACCCCAAT GAAGTCATTC TTATGGACGC TTCAGGAAAC TCTGTCCTCA CTCTGCGCCG CTCCAGGAAG CTGGGATTAG
TAGATAGCTG GTTTGTGTAT GAAGGGGAAA GAGGGAAGCA GGGTACGAGA AGTAAGTGGA GTAAATCGAA TAACAGTCCA
GTTTGTTGTG TAAGGAAGCG TGTGAATATT TTAGACGGCA AGCCCAAGGT TCAGGCCTAC GTGTATCGTG TAGCATCGGA
CTCAGATAAA CGACATGCGG CATTCACAGT TGAAGGTTCC TATGCACATA GGACATGTAA AGTGTTCGAT GAGTGCAAGA
AGGCTGTGGC TGAAATCAAG AGAAAGGAGG CCAATAGCAA AGACGTCTCT TTCGGGATAG AGATTTTTCA ATTGGTTGTT
CACCCTGGCT TTGATCCTAG CTTTGCCATG GCACTCGTTT TACTACTGGA TCAAATGTTT TCGTAATATT CTCCTAGAGT
AACACGTTTC TTGTTTCTAT ATCCACTACC ATTTTACTCC AAAGGCATTG TAAATTACAA GAGATGTTTA TAAAACGAAA
AAGACAATTG ACGTAGTCAA CTATTTACAG TGTGTTTAAT TTCGTGTTTA GGAACAATGA ACGCACGTCA AGCAAGAAGC
TAGACAGAGC AGCGTTCACG TTTTATTTGG TTTGAGGTGG AAAACCGCTG TCACGTACAT TCACAACGTG GAATCAAAGA
TGGCTTAACC TGTCAAATTA TATCTTACGA ATGGGAATTC ATTTCTTACT TGTGCTTCAC AAGAGACTGA TGAGTATACA
AACAGTTCAA ATCGTCGGAG ACTTCGTCCT CCCTATAAAT AAATGCCTTA AAAGTTAAAT AG

[show][hide][copy]CDS

>Vigan.01G048400.01
ATGAGGGTGT TTCCCAGGTT CAAGTTTCTG TCACGAGCAG TGCACGAGGA ACACGAGGGT GAGCATGATG GGGAGAGAAG
CAGGTACCCT TTAACGGAAG GAAGCTTGTG CACGTCCTTA ACGCTAACAG TTTGGAAAAA ATCCCTAGTG ATTAGTTGTA
AAGGGTTCAC CGTCATTGAT TCGTATGGAA ACCTTGCTTA TAGGGTTGAC AATTACATCG GGCACCCCAA TGAAGTCATT
CTTATGGACG CTTCAGGAAA CTCTGTCCTC ACTCTGCGCC GCTCCAGGAA GCTGGGATTA GTAGATAGCT GGTTTGTGTA
TGAAGGGGAA AGAGGGAAGC AGGGTACGAG AAGTAAGTGG AGTAAATCGA ATAACAGTCC AGTTTGTTGT GTAAGGAAGC
GTGTGAATAT TTTAGACGGC AAGCCCAAGG TTCAGGCCTA CGTGTATCGT GTAGCATCGG ACTCAGATAA ACGACATGCG
GCATTCACAG TTGAAGGTTC CTATGCACAT AGGACATGTA AAGTGTTCGA TGAGTGCAAG AAGGCTGTGG CTGAAATCAA
GAGAAAGGAG GCCAATAGCA AAGACGTCTC TTTCGGGATA GAGATTTTTC AATTGGTTGT TCACCCTGGC TTTGATCCTA
GCTTTGCCAT GGCACTCGTT TTACTACTGG ATCAAATGTT TTCGTAA

[show][hide][copy]PROTEIN

>Vigan.01G048400.01
MRVFPRFKFL SRAVHEEHEG EHDGERSRYP LTEGSLCTSL TLTVWKKSLV ISCKGFTVID SYGNLAYRVD NYIGHPNEVI
LMDASGNSVL TLRRSRKLGL VDSWFVYEGE RGKQGTRSKW SKSNNSPVCC VRKRVNILDG KPKVQAYVYR VASDSDKRHA
AFTVEGSYAH RTCKVFDECK KAVAEIKRKE ANSKDVSFGI EIFQLVVHPG FDPSFAMALV LLLDQMFS*