GBrowse Details

Vigan.01G044800.01

Basic Information:
Name: Vigan.01G044800.01
Multiple alignment
Variant Information
Position: Chr01:3234207..3239605 (- strand)
Length: 5399
Functional Information:
Description: Similar to Lysine histidine transporter 1-like protein. [T2DMR0, Phaseolus vulgaris]
InterPro: Amino acid transporter, transmembrane (IPR013057)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.31,0.75,5.13,6.65,3.11,21.52,0.49,8.03
Arabidopsis thaliana homolog: AT5G41800.1
Automatic updates:
Name: NM_001255455 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max putative GABA transporter (LOC100815232), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:3234207..3234513 (- strand)
Length: 307
Type: three_prime_UTR
Position: Chr01:3234514..3234903 (- strand)
Length: 390
Type: CDS
Position: Chr01:3235292..3235528 (- strand)
Length: 237
Type: CDS
Position: Chr01:3235603..3235733 (- strand)
Length: 131
Type: CDS
Position: Chr01:3236114..3236300 (- strand)
Length: 187
Type: CDS
Position: Chr01:3237420..3237517 (- strand)
Length: 98
Type: CDS
Position: Chr01:3239066..3239296 (- strand)
Length: 231
Type: CDS
Position: Chr01:3239430..3239514 (- strand)
Length: 85
Type: CDS
Position: Chr01:3239515..3239605 (- strand)
Length: 91
Type: five_prime_UTR

>Vigan.01G044800.01 class=Sequence position=Chr01:3234207..3239605 (- strand)
TAGCAACTGA CCTAATATAT ATACAGACAC CCACTCACGT ATAGCTTTCA TTCTAGTTCT TCCTTAGTTA ATAACTCACG
GCAGTTCATC CATGACGGAA CCACCAAAAG CCGATATCCA TAACCGCCAC GACGAGGATG CAGATGCCGG AGCTGCTTTC
GTTCTCCAAT CCAAAGGTAA ATAACTCCGA TTCAACAACC ATTAACATCA GAACTCATGA ATTTAAATAG TATTGGTTTC
TGCTAAACCA AAGTAGCCAC CACATCCATG CATGGCTTAT AAAGTCTCCG AGAACTCAAC AATTGACAGG TCAGTGGTGG
CACGCGGGGT TCCACCTAAC AACTGCGATC GTCGGACCAA CAATTCTGAC TCTGCCTTAC GCGTTCCGAG GATTAGGGTG
GGGACTTGGA TTCTTGTGCC TAACGACCAT GGGAGTTGTT ACCTTCTACT CCTATTTCCT CATGTCCAAA GTTCTCGATT
ACTGTGAAAA ATCCGGTCGC CGACACATCC GTTTCCGAGA ACTAGCAGCT GATGTTTTAG GTGATTAATT TATAAGAATT
TCTTTGTGCA ATTTATCTAC ATTTTTGTTT TTTCTTATGT CGACTTCGTT TTAATTAATC TTGTCATATC CATGTCTTTA
TTGTTTCTCC CTCATTTTTC TTGATTGTGG AGATTTTTTT CCTTAGTAAT TCTCTTGTTG ACTTTTTCAA TACTAAAATC
ATTTCCTTTT AAATTCTTTT CCGTTGAGAT GTTAAACGTT CACTCCACAT GATATATCTA TTTTTTTAAT ACTTACCTGA
AAGTTCTAGA TGAAATTGAG GTTGAGCACT AATGGATTTG AGCTAACCAT ATAAAAAGAT TATGACACCG ATTCTTATTA
AAAATTATAA AACACAAATT TTGAATGTTT TTTTTATCTG CAGAATAATG TTCTTTTTAT ATGTTGTACA GTCTATTAAT
TTTTATTAAT AATCTTTGCT TGAACTGTGA GGTTCTTAGT TAAAATGATT GCTTATGTAC AAACATTTTA ATTTAAATAA
AGAGAGATTT CTGACCAATT TAAAATGATC TTAATGGTGA ACTAATATAA GAGTTTTAAC TCTTATATTT TGTCAGTTTT
ATTCTTTATA TTCTATGTGG TGGATTTCTC TCTCTCTTTA TGGGATTTTT TCCCCTTTCT CTCTCTCTTT ATGGGATTTT
TTTCCCCTAT TTGTTAAAAG TAAATTATAT CCATATCTTT TAGGTTATAT TCATTTAAAT ATCTTTATTG CTTGTTGAAT
TTTGAGACAT TCAAAAAAGA GAGAGTATCA TTGATTTTAA TTCATTAGGT TGACCATTAC TACATTATTA GATAATATTT
AATATATATA TATATATATA TATATATATA TAATTATAGT TTTATACGTT ATTTGACAGT TGTGATGTAC GAGTTGAAAC
ATTTATGATT AAATAAGTTT AGTTTGGTAG TTTTCAGTCA AACTTTTTTT TTTAATTTTG AAGACAAATA ATACATTTTG
ATATTATTTA TTTAGTATTT TAAGGCCTTT TGTTTTGTTT CTTTTATTTG GGTGCGAAAT TTCGGGCTAT ATTTAGTTAA
TTTACACAAA TTTGTACAAA TAAGTTTTGC TCACAAAAAT ACTTGTGGCC CGAATTTGCA CACTCATCCA GTTTGGTGAG
ATATTATCTT TGTATCAAAT TGAAATTTCT TTATGAGATC AAATGAGAAA ATTTAAGATA ATATAGTGTC TACAATTTTT
AAATGAAATT TTGCTCTGAT TCACTTTATT ATATTTTGGT CTTTACCTGT GAAGACTTTC CAGAGTCATA TATCCATCCC
TTACCCACAC ATATTTTTTA TTACTCAACT GAATTCTTTT CATTTTTTCT CAAAAAAAAA ACAATAAATT TTATACCTCA
AAATAATGTA TGACAAGTTT TTTTTTCTAT ATTTTTGGTT CCTTAAAATA AAAATTGAGA CTATAAGATT TTCTGAGGTT
ACATCATAGG TGTATGTAAG GTATACAATT TATGTATTTT TGTTATTAAT TTTTGTAAGA TTATAAAAGA TGTATTAATT
TGTAACAGGG TCAGGATGGA TGTTTTATTT TGTAATCTTC ATTCAAACGG CAATCAACAC TGGCGTTGGC GTTGGAGCAA
TCTTGCTTGC GGGTGAATGC CTTGAGGTTA TATTTATTAT TATATAAAGA AACTATAAAG ACTATACCAA TGATAGCAAC
TGCTTGTAGT TATGTATACT TGGTGTTATT ATATACCAAT GAGTTTCGTT TACTCCCATC TGATTGCTCT TTTATTCCTT
TTTCTTTCAC GCCTAGCATT TCAGCAAATT TTCAATTATG CACTCGAAAA CGTTAAGTCA CTAACTATTT TGGATTTTGT
TTTAGAGTTC TTAACTCGTA CGTAAGTTAT TGAACTGATC CCAACTTCCC ATATATAAAA ATGTACCATC TAAAGTGTTA
AGAGGATGAG TACTCATGGA AATTTCCACT CAGAACTTAA ACTCAACCTA AACCATGGTT GGGTCTAGCC GAAGTGTTGA
GTTAGAGTGT GTGAGACAAA CTGAAAAAGG CCAATAGGGT AGTCAATGAG AAAATAACAA AGTTTCATTG AAGGAAGAGA
GAGAAAAATG ATAATGTACA AATTCAATAA TTTCAGATTA TTGAACTGTT TTTTTCACTA AGAGTTAAGT GGGTGCAATC
GCAACAGGAA GATGATTGTG ATTTGTTGAG TCACGCATTC TGCTCATCGA AAGATTGAAA TTTTGGTTCA TGAAGGCAAT
TTTGTTCACA CGTCATAATG ATATGCATTT TGGCCTGAAA CGATAACTCT AGAATGATCC TTTTCTGCAT TATCTTTTAC
TGTTGCTGCG TATTTTGCTT TAAGAGAATA TGATTATTGG AAGTATTAAA TATCAGTGTC AACTTTTAGG CATTGTTGAT
TTGAATGAAT TTGAGAGAGA GTAATTGAGA GAATTTGAAG ATAAAGTTTT TTATTGTTTA TTTGAGTGAA TTTGGACATA
AATGAGAATG AATTTAGAAG TAAATTTTTT TAATCTGTCA CGTCAATAAA ATTCTACACT AATTCTCAGA AATTTTACTT
CCAAATACAC TCTAATTTAC TTCCAAATTC ATTCAAATAA ACAACAAAAA GATTTATCTT CAAATCCTCT CAAATTCCTT
CCATTACTCT CCCCAAATCC CTTCAAATAA ACAAGGCATA AGTATTTCAT TTTTTTAATT TTTAACTTGA AAAATTTATT
GACTGTTTTT TTTTTGTCGT GGAAGATCAT GTACTCCAAT ATTTCAGTTC ATGGATCCCT CAAATTGTAC CACTTTATAG
CAATGGTGAC AGTGGTAATG ATAGTTTTAT CTCAGCTTCC TTCTTTCCAT TCCCTGCGAC ACATCAACTT GTGTTCACTA
CTTTTCGCCC TTGGCTATAC CCTACTCGTG GTTGTTGCCT GTATTCATGC AGGTATTATT TTCCCTTGAT TACACTTTTA
CTACAAGTGC AAACATTTGA AATCATAATT CTGCAATTGG ATTGCATAAT ACTTGTGCTA AATACTTCTC ACTCAATTCA
CTTGGACCCT TCTTCTTTTA ACTAAATGGC CAACATAAGG AGTGTTTTGA ACATCTTTTT TGAACTTGAA TTTTACTAGC
AGTCATTTTG TCTTTCTGGT AGACACTATA ATGTAATTGT ACAGACCCTG TACATTGCTG TTACTTTGAA ACAATTTAGA
ATTTGATGTC AAATGCTAAC TAGACAATAA TAGAATTTTA ACTAAAACAT TGCTGAATGT TTAAGTTCTC ACAAAGGTAA
TGAAGTCAGA AAACTCCAAC CTAATGTTGC AGGTACTTCA GAAAATGCCC CTCCAAGAGA CTATTCTTTA GAACCTAAGA
AGTCTGCAAG GACCTTCAGT GCCTTCACGT CCCTCTCCAT ACTTGCAGCA ATATTTGGGA ATGGCATATT ACCCGAGATA
CAAGTACCTA ATGTTCCTCT TTCAAAGTTT AGATAATTTG TTTGGATGTT TCATTGACCT TGTCATTGCA AATACAGGCA
ACTCTGGCTC CCCCTGCCAC TGGGAAGATG GTAAAAGGCC TTATTATGTG TTATACAGCA ATTTTTTTTA CTTTCTACTC
TGCAGCAGTT TCTGGATATT GGGTGTTTGG AAACAAATCC AACTCAAACA TTTTAAAGAG TCTGCTACCA GATAGTGGAC
CTTCTTTGGC CCCAACTTGG GTTCTTGCAC TTGCAATCAC CTTTGTTCTT CTTCAGCTCT TTGCCATTGG CCTGGTAAGC
TCTCTGTAAA TGGAAAGGGC AATTGACAAG GATTGAGCAA TCACCGAAAA TTCTATTTGA TTTTGTTCCT TCTCTTGATT
TTAGGGGCAA CAAAGACTTT AATTTTGATA TATTATCCAT GTCAACTAAT TAAAAACCAC TTTAAATACA GAGAAATTAT
TACATAGTTT CAAATCAGTA ATATTATGGC CAATCTTCAT CAACCTTTGT ATGCTAAAAA AGCTGGCAGT GTCATGTGGA
GATTGACTAT GTGGTGTAAA CATGTTAACC ATTTGAAGTA GTTATTACAA AAATCAGCAA ACTAATGTTC TAATGAACTA
GCATGAACAA AACTGTCATG AGCAAAGGTT TAATAATGTC TGTCCCAATA TTATTATGAC AGGTTTATTC TCAAGTTGCT
TATGAGATAA TGGAGAAGAA ATCAGCTGAT GTGAGGCAGG GGATGTTTTC CAAAAGAAAT CTCATTCCTC GCATTATTCT
CAGAACAATT TACACGATAT GCTGTGGGTT TTTGGCAGCC ATGTTGCCAT TTTTTGGAGA CATCAACGGT GTGGTTGGTG
CTGTTGGTTT CATCCCTTTG GATTTCATTC TGCCGATGCT TATGTACAAC ATGACATACA AGCCTCCAAA ATCATCCTTA
ACTTACTGGA TCAACCTCTC AATTATAGTG GTGTTCACGG GTGCTGGAAT CATGGGTGCA TTCTCTTCCA TAAGGAAATT
GGTTCTTGAT GCCAACCAGT TTAAGCTATT CAGCAGTGAT GTTGTGGATT GACCAAAAGT TATTTCAAGT TGTGAAACAT
GTAACATGCA CTAATCTCAT GAGAGCTTGT AAATTTCAAA ATAACAAACA AAAGTTTATT TAAGAAAATA GTAGAGAATC
CATTCCCGGT GGTGGTGGAT TAGAATGTGC AAGAAAAATG TGGGAAGGTA AAAAATGGTT ACAAAAAGAA AGGACCTTTA
TCTTGTAATG TTACCGGGTT CTAAAGCCCA CACTAGCATA TCCAGTAAAA TCGGAGTTGG AGATGAAAAT TGCAAGTATT
CTTATATGGG TACATTTGGC AAGATCCAAT CAACCGAAA

>Vigan.01G044800.01
TAGCAACTGA CCTAATATAT ATACAGACAC CCACTCACGT ATAGCTTTCA TTCTAGTTCT TCCTTAGTTA ATAACTCACG
GCAGTTCATC CATGACGGAA CCACCAAAAG CCGATATCCA TAACCGCCAC GACGAGGATG CAGATGCCGG AGCTGCTTTC
GTTCTCCAAT CCAAAGGTCA GTGGTGGCAC GCGGGGTTCC ACCTAACAAC TGCGATCGTC GGACCAACAA TTCTGACTCT
GCCTTACGCG TTCCGAGGAT TAGGGTGGGG ACTTGGATTC TTGTGCCTAA CGACCATGGG AGTTGTTACC TTCTACTCCT
ATTTCCTCAT GTCCAAAGTT CTCGATTACT GTGAAAAATC CGGTCGCCGA CACATCCGTT TCCGAGAACT AGCAGCTGAT
GTTTTAGGGT CAGGATGGAT GTTTTATTTT GTAATCTTCA TTCAAACGGC AATCAACACT GGCGTTGGCG TTGGAGCAAT
CTTGCTTGCG GGTGAATGCC TTGAGATCAT GTACTCCAAT ATTTCAGTTC ATGGATCCCT CAAATTGTAC CACTTTATAG
CAATGGTGAC AGTGGTAATG ATAGTTTTAT CTCAGCTTCC TTCTTTCCAT TCCCTGCGAC ACATCAACTT GTGTTCACTA
CTTTTCGCCC TTGGCTATAC CCTACTCGTG GTTGTTGCCT GTATTCATGC AGGTACTTCA GAAAATGCCC CTCCAAGAGA
CTATTCTTTA GAACCTAAGA AGTCTGCAAG GACCTTCAGT GCCTTCACGT CCCTCTCCAT ACTTGCAGCA ATATTTGGGA
ATGGCATATT ACCCGAGATA CAAGCAACTC TGGCTCCCCC TGCCACTGGG AAGATGGTAA AAGGCCTTAT TATGTGTTAT
ACAGCAATTT TTTTTACTTT CTACTCTGCA GCAGTTTCTG GATATTGGGT GTTTGGAAAC AAATCCAACT CAAACATTTT
AAAGAGTCTG CTACCAGATA GTGGACCTTC TTTGGCCCCA ACTTGGGTTC TTGCACTTGC AATCACCTTT GTTCTTCTTC
AGCTCTTTGC CATTGGCCTG GTTTATTCTC AAGTTGCTTA TGAGATAATG GAGAAGAAAT CAGCTGATGT GAGGCAGGGG
ATGTTTTCCA AAAGAAATCT CATTCCTCGC ATTATTCTCA GAACAATTTA CACGATATGC TGTGGGTTTT TGGCAGCCAT
GTTGCCATTT TTTGGAGACA TCAACGGTGT GGTTGGTGCT GTTGGTTTCA TCCCTTTGGA TTTCATTCTG CCGATGCTTA
TGTACAACAT GACATACAAG CCTCCAAAAT CATCCTTAAC TTACTGGATC AACCTCTCAA TTATAGTGGT GTTCACGGGT
GCTGGAATCA TGGGTGCATT CTCTTCCATA AGGAAATTGG TTCTTGATGC CAACCAGTTT AAGCTATTCA GCAGTGATGT
TGTGGATTGA CCAAAAGTTA TTTCAAGTTG TGAAACATGT AACATGCACT AATCTCATGA GAGCTTGTAA ATTTCAAAAT
AACAAACAAA AGTTTATTTA AGAAAATAGT AGAGAATCCA TTCCCGGTGG TGGTGGATTA GAATGTGCAA GAAAAATGTG
GGAAGGTAAA AAATGGTTAC AAAAAGAAAG GACCTTTATC TTGTAATGTT ACCGGGTTCT AAAGCCCACA CTAGCATATC
CAGTAAAATC GGAGTTGGAG ATGAAAATTG CAAGTATTCT TATATGGGTA CATTTGGCAA GATCCAATCA ACCGAAA

>Vigan.01G044800.01
ATGACGGAAC CACCAAAAGC CGATATCCAT AACCGCCACG ACGAGGATGC AGATGCCGGA GCTGCTTTCG TTCTCCAATC
CAAAGGTCAG TGGTGGCACG CGGGGTTCCA CCTAACAACT GCGATCGTCG GACCAACAAT TCTGACTCTG CCTTACGCGT
TCCGAGGATT AGGGTGGGGA CTTGGATTCT TGTGCCTAAC GACCATGGGA GTTGTTACCT TCTACTCCTA TTTCCTCATG
TCCAAAGTTC TCGATTACTG TGAAAAATCC GGTCGCCGAC ACATCCGTTT CCGAGAACTA GCAGCTGATG TTTTAGGGTC
AGGATGGATG TTTTATTTTG TAATCTTCAT TCAAACGGCA ATCAACACTG GCGTTGGCGT TGGAGCAATC TTGCTTGCGG
GTGAATGCCT TGAGATCATG TACTCCAATA TTTCAGTTCA TGGATCCCTC AAATTGTACC ACTTTATAGC AATGGTGACA
GTGGTAATGA TAGTTTTATC TCAGCTTCCT TCTTTCCATT CCCTGCGACA CATCAACTTG TGTTCACTAC TTTTCGCCCT
TGGCTATACC CTACTCGTGG TTGTTGCCTG TATTCATGCA GGTACTTCAG AAAATGCCCC TCCAAGAGAC TATTCTTTAG
AACCTAAGAA GTCTGCAAGG ACCTTCAGTG CCTTCACGTC CCTCTCCATA CTTGCAGCAA TATTTGGGAA TGGCATATTA
CCCGAGATAC AAGCAACTCT GGCTCCCCCT GCCACTGGGA AGATGGTAAA AGGCCTTATT ATGTGTTATA CAGCAATTTT
TTTTACTTTC TACTCTGCAG CAGTTTCTGG ATATTGGGTG TTTGGAAACA AATCCAACTC AAACATTTTA AAGAGTCTGC
TACCAGATAG TGGACCTTCT TTGGCCCCAA CTTGGGTTCT TGCACTTGCA ATCACCTTTG TTCTTCTTCA GCTCTTTGCC
ATTGGCCTGG TTTATTCTCA AGTTGCTTAT GAGATAATGG AGAAGAAATC AGCTGATGTG AGGCAGGGGA TGTTTTCCAA
AAGAAATCTC ATTCCTCGCA TTATTCTCAG AACAATTTAC ACGATATGCT GTGGGTTTTT GGCAGCCATG TTGCCATTTT
TTGGAGACAT CAACGGTGTG GTTGGTGCTG TTGGTTTCAT CCCTTTGGAT TTCATTCTGC CGATGCTTAT GTACAACATG
ACATACAAGC CTCCAAAATC ATCCTTAACT TACTGGATCA ACCTCTCAAT TATAGTGGTG TTCACGGGTG CTGGAATCAT
GGGTGCATTC TCTTCCATAA GGAAATTGGT TCTTGATGCC AACCAGTTTA AGCTATTCAG CAGTGATGTT GTGGATTGA

>Vigan.01G044800.01
MTEPPKADIH NRHDEDADAG AAFVLQSKGQ WWHAGFHLTT AIVGPTILTL PYAFRGLGWG LGFLCLTTMG VVTFYSYFLM
SKVLDYCEKS GRRHIRFREL AADVLGSGWM FYFVIFIQTA INTGVGVGAI LLAGECLEIM YSNISVHGSL KLYHFIAMVT
VVMIVLSQLP SFHSLRHINL CSLLFALGYT LLVVVACIHA GTSENAPPRD YSLEPKKSAR TFSAFTSLSI LAAIFGNGIL
PEIQATLAPP ATGKMVKGLI MCYTAIFFTF YSAAVSGYWV FGNKSNSNIL KSLLPDSGPS LAPTWVLALA ITFVLLQLFA
IGLVYSQVAY EIMEKKSADV RQGMFSKRNL IPRIILRTIY TICCGFLAAM LPFFGDINGV VGAVGFIPLD FILPMLMYNM
TYKPPKSSLT YWINLSIIVV FTGAGIMGAF SSIRKLVLDA NQFKLFSSDV VD*