GBrowse Details

Vigan.01G044500.01

Basic Information:
Name: Vigan.01G044500.01
Multiple alignment
Variant Information
Position: Chr01:3221661..3224825 (+ strand)
Length: 3165
Functional Information:
Description: Similar to Uncharacterized protein. [I1K6A3, Glycine max]
GO: Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700)
Molecular Function: sequence-specific DNA binding (GO:0043565)
InterPro: DNA-binding WRKY (IPR003657)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.13,0.95,2.78,11.32,5.90,2.83,3.54, 5.79
Arabidopsis thaliana homolog: AT4G11070.1
Automatic updates:
Name: EU019564 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max transcription factor (WRKY20) mRNA, partial cds.
PubMed ID: 18384508 NCBI(pubmed)
Status: Known Variant
Name: KT031235 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max clone HN_CCL_109 WRKY transcription factor (Glyma08g02580.1) mRNA, complete cds.
PubMed ID: 26268547 NCBI(pubmed)
Status: Known Variant
Name: NM_001354170 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max WRKY transcription factor 46 (GMWRKY46), mRNA.
PubMed ID: 18384508 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr01:3221661..3222193 (+ strand)
Length: 533
Type: five_prime_UTR
Position: Chr01:3222194..3222522 (+ strand)
Length: 329
Type: CDS
Position: Chr01:3222636..3222764 (+ strand)
Length: 129
Type: CDS
Position: Chr01:3222883..3223510 (+ strand)
Length: 628
Type: CDS
Position: Chr01:3223511..3224825 (+ strand)
Length: 1315
Type: three_prime_UTR

>Vigan.01G044500.01 class=Sequence position=Chr01:3221661..3224825 (+ strand)
CTTGGATTCA ATCATATATC GCAGGAACAT GAACTTATGA TTAACCAATC ATATAACTTA ACCACACCAG GTGGACTCGG
TCACATTTTC CTATTCTCCA CACTCTCCAC TGACCAAATC TCGGTCTTAG CTGAAAAACT CGCTTTTCTC AGTCAAACTT
GGACTTTCAA CTCTCCAATC TTTTGCTCCT TTTTTTTCCA ACTCAAACCA CCCTTTAAAT ACAACCTTTT CATTCACCCA
AAAAAAACAT ACCTTACCTC ATCACCCTTT GCTCCTCTAA CCTCACTCCC GCTCTCTTCC ACGTCAAACC ACCAATCCTA
ATTCTGGCTA CGTCCATGGT CATTGCTTAC TACACTTCAT CACTCCCAGG ATCTCATAAA TCTCTTCAGC TTCAAACTCA
ACTGCAGAAA AAGAAACTAT TGGTTCTAGA TCCTAGTGCT TTTCCAGAAT AGAAGTCAGA CTATTGGGCA TGAGATAAAC
ATCAAGCATC ACCATCTCCT ATCATTGCCA CTATTATTAT AAACAACACA AAAATGGCGA GTGAATGGAG CTGGGAGCAG
AACACACTCA TCAATGAGCT AATTCAAGGG ATGGAGTTAG CAAGGAAGTT GAAGGAAGAC TTGAGACTGC CGTATTCAGT
TGACTCAAAA GACATGCTGC TGCAGAGGAT ACTATCTTCT TATGAAAAGG CTCTACTGAT TCTAAGATGC AATGCATCAA
CTTCCGACTT GCAGGCCACG AGTCAAGCAC CTGCAGCTTT GTTACCGGAG TCCCCAATAT CAGTCCATGG AAGTCCTCTG
AGTGAGGATC TTGATGGGGC CATCAAGGAT CACCAAGAAA CTCAACATGA TTCAAAGAAA AGGTGAATAT TACTAGACAG
ACTTGGAAGC AGTTTTCTGC CACATAAAAA CATAAACTGT GTCTGATTAT TATATTATAA CTCCTGACAA ATTATTTATA
TTTTATTGGC TTCAGAAAGA TAACGCCCAA ATGGATGGAT CATGTAAGAG TGAGCTGCGA GAGTGGTCTT GAAGGACCAC
AAGAAGATGG CTACAACTGG AGAAAATATG GTCAGAAAGA CATCCTCGGA GCAAAATATC CCAGGTGAGG GGATTTCCCG
TAATCATGTC ATGCTTTAAA AGATAATGAT ACATATAGTT AAGGATAAAA TTGACATGAC CAAGGCCAGC TTCTAATTCA
CAACCCATTA TATCACTTGC AGAAGTTACT ATAGGTGCAC CTTCCGCAAC ACACAGGGCT GTTGGGCAAC GAAGCAAGTG
CAGAGATCAG ATGAAGATCC CACAATATTT GACATAACCT ACAGAGGAAA GCATACCTGT TCTCAAGGAA ACAACGCCGT
TTTGCCACCT AAGTCACCAG ACAAACAAGA GAAGACACAC AGACATAACA TTGACATGCA CCATGCACAG GCATCACAAG
AAAGCCTTAC AAAGTTCAGA AACATCTTGT CTGTCAACAC AGATAAACTA GACAATGGAG ATATGGCATA TCCTTTCACT
TTCCCTTCGA CTTCATCTGG ATGCATGAAA CCATACAACC ACAGCTTGAT TCCTGGGACC CTAGAGAATG AGTACTTCTT
GAGCGATCAA TACCAAACGC ACCTGTTATC TCCAACAACA CCGGAATCAA ACTATCTCCC ATCCCCAACT TTCCAGATGA
ATGAGTTTGA CGGAATCTAC AACAAGCCTT ATTCAGACTC AGATATTAAT GAGATCATTT CCACCAACAC ATCAGCAACC
AATTCTCCAA TTCCCGATTT CAATTTCTCA CTTGATCCAG TGGAAATTGA CCCGAATTTC CCTTTCAACA CCCCAGGATT
TTTCTCCTGA TTGCACTATA AATGGAACAC AATGAGCAAT ATAGTCTTCC TAAAATAGGA CAACTCCAGG CAGAAGTAGA
ATTTTAGAAT AAAGAATCAG CAACTGCAGC ACTTATAAAT GTCATTCCTT TTAGTCAATA TTAGAATTAC GGTTTTGGCA
CAATTTAGCA GTTTGTAGAA TGTAATTTCA AATTTATAGG TGCTCCAAAT CCGTATTGCT ATTTGGTAAA ACCCCAATGC
CCCATCTTTA GTACAAGAGC ATAGTAGTCA GAAAGAACAA CTAACCAACC AAATTAAGTT ACAAGATTGC GTCATCTCAG
AAATAAATCA ATATTATAAG AGAGTTTTTA GAACACTAGT GAAGAGCATA AAAGAGAACG ACAGATCAAA AATTACACAT
CAAAATTGGA TTCGCTGGCC AAACCTTTGC AAGATTCCAT TCCAATCAAC AACTTAATTA CACATTGATA TAATAATATT
AACAACAAAA CGACTTCAAA TATCAAACCT GCAACCTGGG TTCCTTCCTT TACTCCTCCG AGCTTGAATT AGGAGTAGAT
GAAGTTTCAT CTTCTTGTGA ATTTTCAATT TTTCTAAGAC CCTCTCTGAG GCCCAACACA ATGAACAAGT TAGTGAGAGT
TAGAAGTGAC TCAGCCCCGC CATGTAACCA GTCGACATTG GACAAAGAAG TTCCATAATG AACCTTCGCT GTAGTGAGAA
ACACAAATCA CACGTCCATC TTCTTTAAAC TGAGCACATT TTCAGTAAAT TAACTTAAAA CTCACCGTAA ATTCCAGCAG
GTACTGTTCA ATTTTGCAGA GCCATGAAAA AAGGTTGAAA ACATATGAAA TCAGAGAGAG TAGTAGAATT ACAGTAACAA
AAGGGGCACA GACAGAGAGA GAGACTGACT TGTGGCGCCG ACAAAGGCGA GCAAGAAGTA GAAGCCAAAG AGGGTGAGGT
TTGGAGCAGT CTTGGACTTG GTAATGAAAT ATAAGAATCC GATATAAGGA AACAAAGAGA AGGCGAAAAG CTGAGAAGCG
ATGCTCTGGG AATCAATGGT GGGTGCCCAT GGATCAACCG GTAATGGCAA CCCGCACACG ATCCCTCCTC TTTTTCCGTT
ACAAGGGTTC CATTTGGTGC TTCTTCTGAG GCTGTTTACG TTGTCCTTTT GCAGAAAGCT GGTTGGAGGG TTCAGAAAGT
TGGGGGCTTT ACAGAGGGAT GCCAGAGGCA GGGACAACGA CAACTTCATC GTACCAGCCA TTTCGCTGCT CTCTCTTCTA
TCTCATCTCT TCCATCATGC AACACCCGCC ACCGTTCAAT ATCGT

>Vigan.01G044500.01
CTTGGATTCA ATCATATATC GCAGGAACAT GAACTTATGA TTAACCAATC ATATAACTTA ACCACACCAG GTGGACTCGG
TCACATTTTC CTATTCTCCA CACTCTCCAC TGACCAAATC TCGGTCTTAG CTGAAAAACT CGCTTTTCTC AGTCAAACTT
GGACTTTCAA CTCTCCAATC TTTTGCTCCT TTTTTTTCCA ACTCAAACCA CCCTTTAAAT ACAACCTTTT CATTCACCCA
AAAAAAACAT ACCTTACCTC ATCACCCTTT GCTCCTCTAA CCTCACTCCC GCTCTCTTCC ACGTCAAACC ACCAATCCTA
ATTCTGGCTA CGTCCATGGT CATTGCTTAC TACACTTCAT CACTCCCAGG ATCTCATAAA TCTCTTCAGC TTCAAACTCA
ACTGCAGAAA AAGAAACTAT TGGTTCTAGA TCCTAGTGCT TTTCCAGAAT AGAAGTCAGA CTATTGGGCA TGAGATAAAC
ATCAAGCATC ACCATCTCCT ATCATTGCCA CTATTATTAT AAACAACACA AAAATGGCGA GTGAATGGAG CTGGGAGCAG
AACACACTCA TCAATGAGCT AATTCAAGGG ATGGAGTTAG CAAGGAAGTT GAAGGAAGAC TTGAGACTGC CGTATTCAGT
TGACTCAAAA GACATGCTGC TGCAGAGGAT ACTATCTTCT TATGAAAAGG CTCTACTGAT TCTAAGATGC AATGCATCAA
CTTCCGACTT GCAGGCCACG AGTCAAGCAC CTGCAGCTTT GTTACCGGAG TCCCCAATAT CAGTCCATGG AAGTCCTCTG
AGTGAGGATC TTGATGGGGC CATCAAGGAT CACCAAGAAA CTCAACATGA TTCAAAGAAA AGAAAGATAA CGCCCAAATG
GATGGATCAT GTAAGAGTGA GCTGCGAGAG TGGTCTTGAA GGACCACAAG AAGATGGCTA CAACTGGAGA AAATATGGTC
AGAAAGACAT CCTCGGAGCA AAATATCCCA GAAGTTACTA TAGGTGCACC TTCCGCAACA CACAGGGCTG TTGGGCAACG
AAGCAAGTGC AGAGATCAGA TGAAGATCCC ACAATATTTG ACATAACCTA CAGAGGAAAG CATACCTGTT CTCAAGGAAA
CAACGCCGTT TTGCCACCTA AGTCACCAGA CAAACAAGAG AAGACACACA GACATAACAT TGACATGCAC CATGCACAGG
CATCACAAGA AAGCCTTACA AAGTTCAGAA ACATCTTGTC TGTCAACACA GATAAACTAG ACAATGGAGA TATGGCATAT
CCTTTCACTT TCCCTTCGAC TTCATCTGGA TGCATGAAAC CATACAACCA CAGCTTGATT CCTGGGACCC TAGAGAATGA
GTACTTCTTG AGCGATCAAT ACCAAACGCA CCTGTTATCT CCAACAACAC CGGAATCAAA CTATCTCCCA TCCCCAACTT
TCCAGATGAA TGAGTTTGAC GGAATCTACA ACAAGCCTTA TTCAGACTCA GATATTAATG AGATCATTTC CACCAACACA
TCAGCAACCA ATTCTCCAAT TCCCGATTTC AATTTCTCAC TTGATCCAGT GGAAATTGAC CCGAATTTCC CTTTCAACAC
CCCAGGATTT TTCTCCTGAT TGCACTATAA ATGGAACACA ATGAGCAATA TAGTCTTCCT AAAATAGGAC AACTCCAGGC
AGAAGTAGAA TTTTAGAATA AAGAATCAGC AACTGCAGCA CTTATAAATG TCATTCCTTT TAGTCAATAT TAGAATTACG
GTTTTGGCAC AATTTAGCAG TTTGTAGAAT GTAATTTCAA ATTTATAGGT GCTCCAAATC CGTATTGCTA TTTGGTAAAA
CCCCAATGCC CCATCTTTAG TACAAGAGCA TAGTAGTCAG AAAGAACAAC TAACCAACCA AATTAAGTTA CAAGATTGCG
TCATCTCAGA AATAAATCAA TATTATAAGA GAGTTTTTAG AACACTAGTG AAGAGCATAA AAGAGAACGA CAGATCAAAA
ATTACACATC AAAATTGGAT TCGCTGGCCA AACCTTTGCA AGATTCCATT CCAATCAACA ACTTAATTAC ACATTGATAT
AATAATATTA ACAACAAAAC GACTTCAAAT ATCAAACCTG CAACCTGGGT TCCTTCCTTT ACTCCTCCGA GCTTGAATTA
GGAGTAGATG AAGTTTCATC TTCTTGTGAA TTTTCAATTT TTCTAAGACC CTCTCTGAGG CCCAACACAA TGAACAAGTT
AGTGAGAGTT AGAAGTGACT CAGCCCCGCC ATGTAACCAG TCGACATTGG ACAAAGAAGT TCCATAATGA ACCTTCGCTG
TAGTGAGAAA CACAAATCAC ACGTCCATCT TCTTTAAACT GAGCACATTT TCAGTAAATT AACTTAAAAC TCACCGTAAA
TTCCAGCAGG TACTGTTCAA TTTTGCAGAG CCATGAAAAA AGGTTGAAAA CATATGAAAT CAGAGAGAGT AGTAGAATTA
CAGTAACAAA AGGGGCACAG ACAGAGAGAG AGACTGACTT GTGGCGCCGA CAAAGGCGAG CAAGAAGTAG AAGCCAAAGA
GGGTGAGGTT TGGAGCAGTC TTGGACTTGG TAATGAAATA TAAGAATCCG ATATAAGGAA ACAAAGAGAA GGCGAAAAGC
TGAGAAGCGA TGCTCTGGGA ATCAATGGTG GGTGCCCATG GATCAACCGG TAATGGCAAC CCGCACACGA TCCCTCCTCT
TTTTCCGTTA CAAGGGTTCC ATTTGGTGCT TCTTCTGAGG CTGTTTACGT TGTCCTTTTG CAGAAAGCTG GTTGGAGGGT
TCAGAAAGTT GGGGGCTTTA CAGAGGGATG CCAGAGGCAG GGACAACGAC AACTTCATCG TACCAGCCAT TTCGCTGCTC
TCTCTTCTAT CTCATCTCTT CCATCATGCA ACACCCGCCA CCGTTCAATA TCGT

>Vigan.01G044500.01
ATGGCGAGTG AATGGAGCTG GGAGCAGAAC ACACTCATCA ATGAGCTAAT TCAAGGGATG GAGTTAGCAA GGAAGTTGAA
GGAAGACTTG AGACTGCCGT ATTCAGTTGA CTCAAAAGAC ATGCTGCTGC AGAGGATACT ATCTTCTTAT GAAAAGGCTC
TACTGATTCT AAGATGCAAT GCATCAACTT CCGACTTGCA GGCCACGAGT CAAGCACCTG CAGCTTTGTT ACCGGAGTCC
CCAATATCAG TCCATGGAAG TCCTCTGAGT GAGGATCTTG ATGGGGCCAT CAAGGATCAC CAAGAAACTC AACATGATTC
AAAGAAAAGA AAGATAACGC CCAAATGGAT GGATCATGTA AGAGTGAGCT GCGAGAGTGG TCTTGAAGGA CCACAAGAAG
ATGGCTACAA CTGGAGAAAA TATGGTCAGA AAGACATCCT CGGAGCAAAA TATCCCAGAA GTTACTATAG GTGCACCTTC
CGCAACACAC AGGGCTGTTG GGCAACGAAG CAAGTGCAGA GATCAGATGA AGATCCCACA ATATTTGACA TAACCTACAG
AGGAAAGCAT ACCTGTTCTC AAGGAAACAA CGCCGTTTTG CCACCTAAGT CACCAGACAA ACAAGAGAAG ACACACAGAC
ATAACATTGA CATGCACCAT GCACAGGCAT CACAAGAAAG CCTTACAAAG TTCAGAAACA TCTTGTCTGT CAACACAGAT
AAACTAGACA ATGGAGATAT GGCATATCCT TTCACTTTCC CTTCGACTTC ATCTGGATGC ATGAAACCAT ACAACCACAG
CTTGATTCCT GGGACCCTAG AGAATGAGTA CTTCTTGAGC GATCAATACC AAACGCACCT GTTATCTCCA ACAACACCGG
AATCAAACTA TCTCCCATCC CCAACTTTCC AGATGAATGA GTTTGACGGA ATCTACAACA AGCCTTATTC AGACTCAGAT
ATTAATGAGA TCATTTCCAC CAACACATCA GCAACCAATT CTCCAATTCC CGATTTCAAT TTCTCACTTG ATCCAGTGGA
AATTGACCCG AATTTCCCTT TCAACACCCC AGGATTTTTC TCCTGA

>Vigan.01G044500.01
MASEWSWEQN TLINELIQGM ELARKLKEDL RLPYSVDSKD MLLQRILSSY EKALLILRCN ASTSDLQATS QAPAALLPES
PISVHGSPLS EDLDGAIKDH QETQHDSKKR KITPKWMDHV RVSCESGLEG PQEDGYNWRK YGQKDILGAK YPRSYYRCTF
RNTQGCWATK QVQRSDEDPT IFDITYRGKH TCSQGNNAVL PPKSPDKQEK THRHNIDMHH AQASQESLTK FRNILSVNTD
KLDNGDMAYP FTFPSTSSGC MKPYNHSLIP GTLENEYFLS DQYQTHLLSP TTPESNYLPS PTFQMNEFDG IYNKPYSDSD
INEIISTNTS ATNSPIPDFN FSLDPVEIDP NFPFNTPGFF S*