GBrowse Details

Vigan.01G029000.01

Basic Information:
Name: Vigan.01G029000.01
Multiple alignment
Variant Information
Position: Chr01:1999662..2004838 (+ strand)
Length: 5177
Functional Information:
Description: Similar to 7SK snRNA methylphosphate capping enzyme. [G7L862, Medicago truncatula]
GO: Biological Process: tRNA modification (GO:0006400)
Molecular Function: methyltransferase activity (GO:0008168)
Molecular Function: tRNA (guanine-N7-)-methyltransferase activity (GO:0008176)
InterPro: tRNA (guanine-N-7) methyltransferase (IPR003358)
Bicoid-interacting 3 (IPR010675)
Bin3-type S-adenosyl-L-methionine binding domain (IPR024160)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:11.02,10.70,4.48,5.49,8.39,6.05,8.61,4.31
Arabidopsis thaliana homolog: AT5G51130.1
Structure :
Position: Chr01:1999662..1999800 (+ strand)
Length: 139
Type: five_prime_UTR
Position: Chr01:1999801..1999881 (+ strand)
Length: 81
Type: CDS
Position: Chr01:1999969..2000083 (+ strand)
Length: 115
Type: CDS
Position: Chr01:2000229..2000276 (+ strand)
Length: 48
Type: CDS
Position: Chr01:2000931..2001204 (+ strand)
Length: 274
Type: CDS
Position: Chr01:2003233..2003320 (+ strand)
Length: 88
Type: CDS
Position: Chr01:2003695..2003760 (+ strand)
Length: 66
Type: CDS
Position: Chr01:2004138..2004206 (+ strand)
Length: 69
Type: CDS
Position: Chr01:2004325..2004414 (+ strand)
Length: 90
Type: CDS
Position: Chr01:2004415..2004838 (+ strand)
Length: 424
Type: three_prime_UTR

>Vigan.01G029000.01 class=Sequence position=Chr01:1999662..2004838 (+ strand)
GTAAATTAGG CAGAAGGAAA TATCAATTTT GAATGTTCAT TATAGAATGC CAACCCTCTA AACCCCAAAT CATAGAGGAG
GGTTTTATTG CAGGTGAGGG AAAAACATAG AGAAGAGAAG AAGAGAAGGA GGCGATTCAA TGGAAACCCA AAAGCAGAGC
AGTAAAAAGC GGAAACAAGT TTTCCCATTC GGAAACTACA GGAGTTACTA TGGATATCGA GTATTCTTCT TCACGTTCAT
TTGTTAGCGT TTTATTGAGT TTAAGGTTGT CCATGTTCGA TGTTTTGTTA ATTTGATGTT GTTTCAGATT GATCAAGGCA
CGGATGAAGA TCCTCGATTG AAAGTGTTAA GAAAGGAATG GTTTGAAGGG AAGGAGTGTC TTGATATTGG CTGCAACAAC
GGGATAATCA CTATACAGAT TGGTAATTTT CTCCTTGTTT CCTTCATTTT TTTTGTTTCA ATGATTTATG CCTTCAAGTA
AGCTATCATT CGAATAGCTA TTAGTCTGAA TATTGCTGTA AAGTAAATAA CTATTTGCAT TTCATGCTCA TTGCTTTTCC
CCCACAGCAC AGAAGTTTTG CTGCCGGAGC ATTCTTGGAA TTGACATTGA TTCTGGTAAG ATGCTTATCT ATTTTAATTT
CTATTGCCTA AAGGTATTTT TTGTAACTTA AAATTCAGCT TTGTTCTGTA TATGTTTCTT TCTTACTCCG TATGCCGAGC
ATAACATAAT TCTAATGTGT AATTCTTGAA ATTCTAATTG ATGTTGTTCT GTCATGAACA GTAAAAATAA TATTTCTTTT
TCTATAGTTA TAGTGAAAAC AGTCTATGGA AACATAAAAT ATTTCCTTAC GGCCTCAATT TATGAATTGA ATAGGGTTTA
ACAATTATGT TACTTAAACC AACTCAAGCT ATATTCTCCT TGTAGTATTG TATATGCAAC TTGACAAGTG GCTAATAGGC
AGTATACTTC TCTAGTAAGT AACTTTTATG ATTTAAAATC AGCATAGAAT GAAACAGTTA GTTTATAAAA GTTATATTAG
AAATTGATTT AACTCTATCT CAATGAAAAA AGAGTGTAAA GATGCTCTGA ATTTTGTTTC TGGTGTCAGT ATTGCATACT
TATCGATAAG TTGTTTTCAA TCATGTCAAT ATCTTATTCA TAATTTAGCA AAAGGTAGTA TTAAGTTTAA ACTCCTTATT
TTACTTTTGA ACTTGCCAAT TGGGTAGCAC TAATTTTCTT AATTGATTTT TTTATGCTCA ATGCGCTAGA TCGAGTTCAG
GATGCATATT GGAATCTCAG AAAATCTGCT AGATTGAGCT CTTCTGGGAA TAAACCTGTG AAAGCCTCCA AACTTCAGGA
CAAGGATCAT GCTGATGATT CAGGCAACAG AGTCACTGCA TTGTCTAGAG TTGATACGAA GGAGATTTCA GAGAAACATT
CTTCTCCAGA GCAAATTGAT CTGTTTACTA TAGTTTCATT TAAACGAGAA AATTTTGTTC AGAGTCGACA TCCACCAGGA
AAGAACTATG ATACAATCCT TTGGTAAGTT GCTGAGTTGG TTGTTTTTTC CCCTTGTTTC ACTTCTTGAA ACATATTTTG
GGCCAAAACT TTTAAGGTGA GGGACTGAGG GAGGTAGAAA TTTGCCATGT CTTATGCCCT ATTGGAAAAG TCCTGTTCAA
ATTTGTTTGA ATTTGAATTT CTGTACTTTC TAGTCCTTTT TTTGGATTGA CTTCCACAGG ATAGTTGCTA TTTATTGGAA
ATAGTTTGGG CATATCCTAA ACCGAAAAGT TATCTCAAGA GCTAGGAGTG CTTTGGCTAT ATTCCTAGTT AATGTGAGAC
ATCCTAACAC CCTCCACTCA CATCCACCAA TGGATAACTA AAGGGTAATT TTGCATGATT GGACATGTGT GGATTGCCCA
ATATCAAGAC TAGATACGTG GTCCATTGTT ACCAGTATCT TTTGATTCTT GATGCAATAT GTTTTGACTC AAGTAGCTAG
CAATATGAAT CATTGAAAAA AATCACTGTG GTGTGATTCT TGAATCCAAC CATGAATCAG AGGTCCAAGT ATCACTAAAT
TACCATTAGA TGAATTATGT GACTCTAGGC TGTGATTTGC ACACCAGACT GGATCAGGTT ATGCACGACT GACTGGCTCT
GAAAAGACCA AAAGAATAAA ATTTTATGTT CTCAACTCAT TCTTTTTTAC TTCTTTCCAC TCTTCTTTGA CCTTCCTCTT
CTCAACTCTA ATACCTTTCT TTGATACGTT TCTTTTGGTA TAGTAGCAAC TACTTAAAGA TGGTGATTTT TTTTTTCGCT
TGTGTGACCT GGAAATTGTA AATTTCATAC GATGCTCGTT TTTTCTTTTT AAACATGAAT TTCATTAGCA ACCATGTCAT
TAAATTTTAT TTTATAGGTT AAACTCTTTA AATTATTCCT CCCTCGTAAA TGTCAACTAT ACTAAAGGAC CCTGCTGTGA
GAAAGCTTCT TACTGTGGAA GCTATGAGCA ACGGTCATTG TACTCAGTCT TACCCTTTCT TATGAAAAGA GTCTGAAGGA
CCCTGCTGTG AGAAAGCTTC TTACTGTGGA AGCTATGAGC AACGGTCATT GTACTCAGTC TTACCCTTTC TTATGAAAAG
AGTTTGAAGG ACCCTGTTGT GAGAAAGCTT CTTACTGTCG AAGCTATGAG CAACGGTCAT TGTACTCAGT CTTACCCTTT
CTTATGAAAA GAGTCTGTTT CTGAATTTGA ACTCATGCCA ACCCCAGACC TTGGTGCAAG TTTACTGCGA TTCCAGGTTT
TGCCTCCTTC CTCCTAAATG TAGGCACCAT ATTCAAAATA ATTTCTGACA ATTCGGGTCC ATCAAATGCT ACCACAGTTT
TGGTTCTTTT TGTAGATGCT GGTATCCATC GAGTTTGTCA TGCCAATATC ATGCATGTTT TATCAAACAA TATATTAATT
TGTATATTGT GTGTGGTCCA TAATTTTAAT TTGGGGTCAA TATGTTTTAG GATTTTTTTT TAGTTATTGA TTATGAATTT
GTACTTCTAT CATATGTCTT TGTTAGTTTA TCGACTACCA CATTTTATTA TTAATCCTGA ATCTTGCCAT TCATGATACG
GTTAAAATCA CAATTCAGAG AATTGACATT CCGGTTCACC ATTTGAATCT TGATTCAACT TCCATGTCTG GCACTATACT
GATAATAATA TAATTCAGCC TCCAGCTAAC TTGAAGGGAA AGATTGCCCA AGTCTTGTAA TAAACACTTT GTGGCCATAT
TCCTATTCTA TGTGTGACAT CTTTACACTA TCCTAATGGA TATGTCCATA TTGTACTTTT TTATTCTTAA TGATTGGATA
TTTCTGATAT TGCATTTTTA ATCATGATTA CACATTACTT TTATCGACCA AGGACTTGCA TTTTGAATTA TTAAGCTGCG
TGAAGAAAGA CATTCTGAAG TTGGTTTTGA CTTAACCCTT GTTCTATAAC ATCGTTATCT GAATACGCTT GTTATGAATT
GTCTTCAATG TGCTGCTTAT GTTATTATAC AAGTTATCTT TTCCTTTGTA GTTTGAGTGT AACAAAGTGG ATACATCTAA
ATTGGGGAGA TGACGGCTTA ATTACTTTAT TTTCAGAGAT TTGGAAACTG CTCCGACCTG TAAGTATTAT CTCCTTTCAT
CATCCTATGG TTTTTCTTTC TACTAGATGT GTTGACCACT GAATATATAA GTGCTCCAAA AGGAACTGAA AAAACGCATG
ATATATTCGG ACCTATTTGG TCAGATAAGT TGTTCATGGT GAGATGATCT CTTCTGCAAA TCTATTCCCA CCCTTCCTTT
CTCTTTATCC TTGTAGCCAT GGATGTTTTC TTCTACTCCC TTTCTCAAGT TCCATCACCT CCCTCTACTC CATAGACTTT
TTACTTTTCT TTTTCTTCCA GATTGGTTTA ATCTTTACTT TTTGATTTAA TAATGCACAT GATGTTATTA TATTTTGTTG
TATATGTAAA AACATATTCT TTCTTTTGTG CAGGGTGGCA TTTTTGTGGT GGAACCTCAA CCATGGAAGT CATACGAAAG
CAATCGTAGT GTCTCAGAGG TGATAATTTG CTAGCCTTCA TTTCTGTGAT TATCATCTTA ATATTATTGA AGGGGTGCTG
GGAAGTATAA ACTATAAACC TTTGAATGCA TACTTTGGCA AGGTTACAAA GTTTACGTAG TTATCTTTGA TCTATTCATC
TTGTAAAATC TCTGCATGAT CTGGAATCAT TTTTAAAAGT GGAAAATGTT TTCTTGAAAT AAACAAATCC TTAGCTTCAA
TGAATGTATA TAATTGTATT TTCTTCTGTA ATAGAACAAC TAATGCGTTA TGAATCTGCT GATATTTTAC TACTGTTTTT
AAATTTCTTT AGTCCTAGCT GGATAATGCT AAAAATAAGA AGGGCTATTG AATTATTTTT TTTTCCCATT ATGCAGACCA
CTGCTGCCAA CTACCGTAAT ATTACAATTC GTCCAGAACA ATTTCAGGAA ATATTACTAG ATAAGGTTTG CGTTCAACAT
TTCTTGGAAT ACTATCTTCC TCTTTTGGTA ACCAGCATTT TTTCATTGCC AATTTATCAT GATTTTTTTC AGATTCTAAT
GGCTGGTGTT TAAATTTACC CAGATTGGAT TTCGAACAGT AGAAGACATC ACTTCCGGTT TGACACTTAG CAAGACTGGT
TTCAATAGAC CAATTTTGGT TTTCCGCAAA TGATCTCTGC AGGGTCAGGT GCAGAGTCAA TGTCATTTAA CATGGAGTAG
TTTTACTTTT GCTCCACATA GATGTGGCTG TTATATGTTG CCATCAATGC TGGCTCACAG ATCGCAATCT TGCTTGCAGT
GCACCTACTG TTCACGACGA AAACTTGATA TGCATGGAGC ATCCTTTGTG AGAATACCAG TATTAAAACA AATTGAGTTG
AAGGGACTTG GAATGTAGAG GAAAATGCAC GCTAAAATAT TTATATCTTT CGTGTAAATG CGAATGGCTT AAAAAATTTA
CTCCACTTAA TTTAAGTTTT AAGCTAAGAA ATGGGAAGTA ATTTCTCTTT TATTTTATAG ATAGAATGGT TGGTTTCTAT
TATTTTTCAA TGTCCTCTTG GAGTATTTAT TCTAAATATG CATAAGGTCT ATTTCAG

>Vigan.01G029000.01
GTAAATTAGG CAGAAGGAAA TATCAATTTT GAATGTTCAT TATAGAATGC CAACCCTCTA AACCCCAAAT CATAGAGGAG
GGTTTTATTG CAGGTGAGGG AAAAACATAG AGAAGAGAAG AAGAGAAGGA GGCGATTCAA TGGAAACCCA AAAGCAGAGC
AGTAAAAAGC GGAAACAAGT TTTCCCATTC GGAAACTACA GGAGTTACTA TGGATATCGA ATTGATCAAG GCACGGATGA
AGATCCTCGA TTGAAAGTGT TAAGAAAGGA ATGGTTTGAA GGGAAGGAGT GTCTTGATAT TGGCTGCAAC AACGGGATAA
TCACTATACA GATTGCACAG AAGTTTTGCT GCCGGAGCAT TCTTGGAATT GACATTGATT CTGATCGAGT TCAGGATGCA
TATTGGAATC TCAGAAAATC TGCTAGATTG AGCTCTTCTG GGAATAAACC TGTGAAAGCC TCCAAACTTC AGGACAAGGA
TCATGCTGAT GATTCAGGCA ACAGAGTCAC TGCATTGTCT AGAGTTGATA CGAAGGAGAT TTCAGAGAAA CATTCTTCTC
CAGAGCAAAT TGATCTGTTT ACTATAGTTT CATTTAAACG AGAAAATTTT GTTCAGAGTC GACATCCACC AGGAAAGAAC
TATGATACAA TCCTTTGTTT GAGTGTAACA AAGTGGATAC ATCTAAATTG GGGAGATGAC GGCTTAATTA CTTTATTTTC
AGAGATTTGG AAACTGCTCC GACCTGGTGG CATTTTTGTG GTGGAACCTC AACCATGGAA GTCATACGAA AGCAATCGTA
GTGTCTCAGA GACCACTGCT GCCAACTACC GTAATATTAC AATTCGTCCA GAACAATTTC AGGAAATATT ACTAGATAAG
ATTGGATTTC GAACAGTAGA AGACATCACT TCCGGTTTGA CACTTAGCAA GACTGGTTTC AATAGACCAA TTTTGGTTTT
CCGCAAATGA TCTCTGCAGG GTCAGGTGCA GAGTCAATGT CATTTAACAT GGAGTAGTTT TACTTTTGCT CCACATAGAT
GTGGCTGTTA TATGTTGCCA TCAATGCTGG CTCACAGATC GCAATCTTGC TTGCAGTGCA CCTACTGTTC ACGACGAAAA
CTTGATATGC ATGGAGCATC CTTTGTGAGA ATACCAGTAT TAAAACAAAT TGAGTTGAAG GGACTTGGAA TGTAGAGGAA
AATGCACGCT AAAATATTTA TATCTTTCGT GTAAATGCGA ATGGCTTAAA AAATTTACTC CACTTAATTT AAGTTTTAAG
CTAAGAAATG GGAAGTAATT TCTCTTTTAT TTTATAGATA GAATGGTTGG TTTCTATTAT TTTTCAATGT CCTCTTGGAG
TATTTATTCT AAATATGCAT AAGGTCTATT TCAG

>Vigan.01G029000.01
ATGGAAACCC AAAAGCAGAG CAGTAAAAAG CGGAAACAAG TTTTCCCATT CGGAAACTAC AGGAGTTACT ATGGATATCG
AATTGATCAA GGCACGGATG AAGATCCTCG ATTGAAAGTG TTAAGAAAGG AATGGTTTGA AGGGAAGGAG TGTCTTGATA
TTGGCTGCAA CAACGGGATA ATCACTATAC AGATTGCACA GAAGTTTTGC TGCCGGAGCA TTCTTGGAAT TGACATTGAT
TCTGATCGAG TTCAGGATGC ATATTGGAAT CTCAGAAAAT CTGCTAGATT GAGCTCTTCT GGGAATAAAC CTGTGAAAGC
CTCCAAACTT CAGGACAAGG ATCATGCTGA TGATTCAGGC AACAGAGTCA CTGCATTGTC TAGAGTTGAT ACGAAGGAGA
TTTCAGAGAA ACATTCTTCT CCAGAGCAAA TTGATCTGTT TACTATAGTT TCATTTAAAC GAGAAAATTT TGTTCAGAGT
CGACATCCAC CAGGAAAGAA CTATGATACA ATCCTTTGTT TGAGTGTAAC AAAGTGGATA CATCTAAATT GGGGAGATGA
CGGCTTAATT ACTTTATTTT CAGAGATTTG GAAACTGCTC CGACCTGGTG GCATTTTTGT GGTGGAACCT CAACCATGGA
AGTCATACGA AAGCAATCGT AGTGTCTCAG AGACCACTGC TGCCAACTAC CGTAATATTA CAATTCGTCC AGAACAATTT
CAGGAAATAT TACTAGATAA GATTGGATTT CGAACAGTAG AAGACATCAC TTCCGGTTTG ACACTTAGCA AGACTGGTTT
CAATAGACCA ATTTTGGTTT TCCGCAAATG A

>Vigan.01G029000.01
METQKQSSKK RKQVFPFGNY RSYYGYRIDQ GTDEDPRLKV LRKEWFEGKE CLDIGCNNGI ITIQIAQKFC CRSILGIDID
SDRVQDAYWN LRKSARLSSS GNKPVKASKL QDKDHADDSG NRVTALSRVD TKEISEKHSS PEQIDLFTIV SFKRENFVQS
RHPPGKNYDT ILCLSVTKWI HLNWGDDGLI TLFSEIWKLL RPGGIFVVEP QPWKSYESNR SVSETTAANY RNITIRPEQF
QEILLDKIGF RTVEDITSGL TLSKTGFNRP ILVFRK*