GBrowse Details

Vigan.01G028400.01

Basic Information:
Name: Vigan.01G028400.01
Multiple alignment
Variant Information
Position: Chr01:1964535..1967179 (+ strand)
Length: 2645
Functional Information:
Description: Similar to Auxin-induced protein. [V7CQ36, Phaseolus vulgaris]
GO: Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
Cellular Component: nucleus (GO:0005634)
Molecular Function: protein dimerization activity (GO:0046983)
InterPro: AUX/IAA protein (IPR003311)
Aux/IAA-ARF-dimerisation (IPR011525)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.09,2.36,10.70,2.37,10.90,23.67,23.41,23.81
Automatic updates:
Name: NM_001255354 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max auxin-responsive protein IAA27-like (LOC100795749), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:1964535..1964930 (+ strand)
Length: 396
Type: five_prime_UTR
Position: Chr01:1964931..1965334 (+ strand)
Length: 404
Type: CDS
Position: Chr01:1966038..1966261 (+ strand)
Length: 224
Type: CDS
Position: Chr01:1966338..1966482 (+ strand)
Length: 145
Type: CDS
Position: Chr01:1966588..1966702 (+ strand)
Length: 115
Type: CDS
Position: Chr01:1966703..1967179 (+ strand)
Length: 477
Type: three_prime_UTR

>Vigan.01G028400.01 class=Sequence position=Chr01:1964535..1967179 (+ strand)
AAATAAGCAA AGTATGGCGG ATACTTTGTG TGGATTGTCG GAGTAGTTGG TCACAAAAAG ATTCACAAAA ATTTATAAAA
AACTAAAAAG GAAAAACAGC CTTCAAAGAA TTTTTTTAAA TTTGTAGAAT AAAGCGGAAA CAGTTCCGCG TTTTCTTTTG
CAAACTGCAT CCTCGTTCTT TGTTTAATGT TGCCACTTCC CTGTCATATT TATTTTTTGA TTCCCTTCAA TGCAATTGGG
TAACACTACT TAACAGAGCA GAGAGAAAAG CTTCAATCAC TCGTTCACTC ACATAACATC AGATATATAT CTTTCTACTG
TGGTGTTGTG ATTATTTAAT TCCATATATT CTCTCTTTTC TTGATTTGTG TTGTGAAACA GTTAAAAGTA GAGTTGATGT
CTGAGCCATT GGAAGAGGTT CCTTCAATGA AAGGAGGGTG CGAAGAAGGG TTGAACCTGA GGGCCACTGA GCTAAGGCTT
GGGTTGCCAG GGCGTGAGTC ACCTGAGAGG GAGGGCGCGT TTAAGGCTGT GGTGGTGTCT GGGTCCAAAA GGGGTTTCTC
TGATGCCATT GATGGAGGTT CTGGAAACTG GAATGGTGGA TCTGAAGTGG GTTTGGGAAA AGATGTTGTC TTGTTCTCTC
CGAGGGGAAC TGTTAGTGCT GCCAAGTCTC TCACCCTCAC TGCAACAGAC TGCACCAAAC AGCCTACTGT TTTGGGTGCT
TCTGTTCTCA AAGAAACTGT TCCACACTCT CCAAAACCGC TGCATGAGAA GAAACCTCAG ATTTCTGCTC CAGCTGCGAA
GTATATATTT TACTTTATCC TTGTTTCTTG CCATTACCTA TTAGATAAGT TTGTATGCTG CTTACTGTTT TTTGTTCGGG
TTTGTTACAT TGTTTCTTTC TCTGTTTTAT TTTATCTTAG TTTGTCGATG TTGGTTCGGA CTTTATTAAA TTATTTGATG
TGTTTGTGTT GTCTCTGTTT GGTGTTTATA GTTTTTTGTT TATGTTTTCA AGAAATTGGA TGCAAGATGT TTCTTCTGGT
ACTGAGTAGG TGGATAAGCG AGTTTCTTTC TTTCTTTTCT GTTGTAACCA GTTGGAATTT ACCTCAAGCT TTGGTTTCTA
ACTCGTTTTT GGTTAGCGTT GCGTGATCCA TGTAGTTTGA ATTGATTCCA TATACTGGGA TTAAACTTTG TTTTTGTTAT
TCCATCAGAA AATAGTATGA AATGAACAAT CTTAGTCTGT TGCCGCTGGT TATATTCTCA TGTTGGTCTC TAGTGCTATT
TCTTGTCTTC TATGTAATTC AGAACATTCT TTCTATGTTA ATAATGATCT TATAGCTACT TTGGTTGTTC CACAACTTTT
CTTGGATGTC TTGGTTGGTT GTCTGTGATC TTTGTTTTTG GTGTATGATT GAGATTTCAC TTCTCCAAGT ATGATTTTCT
GTTCTTCCTG TTACTGAAAA AAATTCAGCC TATCATTGTG TAATTTTTGG TTGTTTGAAT CAGGGCGCAA GTTGTGGGGT
GGCCACCAAT CCGTTCTTTC AGGAAGAACT CAATGGCTCA GCCTCAGAAG AATGAAGATG CTGAGGCAGA AGCCAAGTCT
GAATGTCTTT ATGTTAAAGT CAGCATGGAA GGTGCTCCAT ACTTGAGGAA AGTGGATCTT AATAGTTTTG GCACTTACAA
GGAACTCTCT TTGGCACTCG AAAAGATGTT TAGTTGTTTT ACAATCAGTA AGTTCCCTTC TACTCCACTT GCTCTGATGC
ATATCAGCAA ATATTCTGAT GATGTTTTTA CTGACAAGAT CAGGTCAATG TGGCTCTTAT GGGATTTCTT CTAGTCGAGA
AAAATTAAGT GAAAGTAGAT TGATGGATCT TCTTCATGGT TCAGAATATG TTCTTACATA TGAAGACAAG GATGGAGATT
GGATGCTAGT TGGTGATGTT CCCTGGGAGT AAGTGCAATT TCATGATTAA TAGAAGATGT AATGTAATTC CTTTATATGT
TTTTCATTTT GTTCAAGGAA GCATATCTAA AGTGATTCTA ACTGTTCTTT TAGGATGTTC ACTGAATCTT GCAAGAGGCT
GAGGATAATG AAGAGTTCTG AAGCAATTGG GCTAGGTAGC TCCAAAATTA ATCTCTTATA CTCTGTTTTC CATCACCCAG
AATTATGAGT AGTCATAATT CTGGTGTGTA TGTTTATTGC TATACTGATA TGAGTTGTAA TCACTGCAGC ACCTAGGGCG
GTGGAAAAGT GCAAAAGTCG CAACTAATGG ACTGGTGTAT GGTTCTGTGG TGTGATCCTG AAGGATGAAA GATGAGATTT
AAGCATATAA TACCTTATTT CTTATGTATA ATTTTCTATA TAGGAGATTG GGGTGTCCTA AACTTTTTAT TGGGCAAGTT
ATATTGATGA CAACATGTTA GTTTTTGTTG TAGCCGTCTA TATCATGTTG ATGTAGAGGT TTAAGGTTTT AGGTTGTTGT
TCTCCCACAC TTCAATTATG TAAATTTTGT AGTACTCCTT CCCCTTTCTC TGTAAGAGAG CTTTTGTTTG TCTTGCCAAA
CTAAGAAAAC AAAGTCACAC TTTCTATATG TGCATTTCAC CACTCCTATA TTGTAAAGTT AAATACTTAT TTTTAATCGA
TAGTG

>Vigan.01G028400.01
AAATAAGCAA AGTATGGCGG ATACTTTGTG TGGATTGTCG GAGTAGTTGG TCACAAAAAG ATTCACAAAA ATTTATAAAA
AACTAAAAAG GAAAAACAGC CTTCAAAGAA TTTTTTTAAA TTTGTAGAAT AAAGCGGAAA CAGTTCCGCG TTTTCTTTTG
CAAACTGCAT CCTCGTTCTT TGTTTAATGT TGCCACTTCC CTGTCATATT TATTTTTTGA TTCCCTTCAA TGCAATTGGG
TAACACTACT TAACAGAGCA GAGAGAAAAG CTTCAATCAC TCGTTCACTC ACATAACATC AGATATATAT CTTTCTACTG
TGGTGTTGTG ATTATTTAAT TCCATATATT CTCTCTTTTC TTGATTTGTG TTGTGAAACA GTTAAAAGTA GAGTTGATGT
CTGAGCCATT GGAAGAGGTT CCTTCAATGA AAGGAGGGTG CGAAGAAGGG TTGAACCTGA GGGCCACTGA GCTAAGGCTT
GGGTTGCCAG GGCGTGAGTC ACCTGAGAGG GAGGGCGCGT TTAAGGCTGT GGTGGTGTCT GGGTCCAAAA GGGGTTTCTC
TGATGCCATT GATGGAGGTT CTGGAAACTG GAATGGTGGA TCTGAAGTGG GTTTGGGAAA AGATGTTGTC TTGTTCTCTC
CGAGGGGAAC TGTTAGTGCT GCCAAGTCTC TCACCCTCAC TGCAACAGAC TGCACCAAAC AGCCTACTGT TTTGGGTGCT
TCTGTTCTCA AAGAAACTGT TCCACACTCT CCAAAACCGC TGCATGAGAA GAAACCTCAG ATTTCTGCTC CAGCTGCGAA
GGCGCAAGTT GTGGGGTGGC CACCAATCCG TTCTTTCAGG AAGAACTCAA TGGCTCAGCC TCAGAAGAAT GAAGATGCTG
AGGCAGAAGC CAAGTCTGAA TGTCTTTATG TTAAAGTCAG CATGGAAGGT GCTCCATACT TGAGGAAAGT GGATCTTAAT
AGTTTTGGCA CTTACAAGGA ACTCTCTTTG GCACTCGAAA AGATGTTTAG TTGTTTTACA ATCAGTCAAT GTGGCTCTTA
TGGGATTTCT TCTAGTCGAG AAAAATTAAG TGAAAGTAGA TTGATGGATC TTCTTCATGG TTCAGAATAT GTTCTTACAT
ATGAAGACAA GGATGGAGAT TGGATGCTAG TTGGTGATGT TCCCTGGGAG ATGTTCACTG AATCTTGCAA GAGGCTGAGG
ATAATGAAGA GTTCTGAAGC AATTGGGCTA GGTAGCTCCA AAATTAATCT CTTATACTCT GTTTTCCATC ACCCAGAATT
ATGAGTAGTC ATAATTCTGG TGTGTATGTT TATTGCTATA CTGATATGAG TTGTAATCAC TGCAGCACCT AGGGCGGTGG
AAAAGTGCAA AAGTCGCAAC TAATGGACTG GTGTATGGTT CTGTGGTGTG ATCCTGAAGG ATGAAAGATG AGATTTAAGC
ATATAATACC TTATTTCTTA TGTATAATTT TCTATATAGG AGATTGGGGT GTCCTAAACT TTTTATTGGG CAAGTTATAT
TGATGACAAC ATGTTAGTTT TTGTTGTAGC CGTCTATATC ATGTTGATGT AGAGGTTTAA GGTTTTAGGT TGTTGTTCTC
CCACACTTCA ATTATGTAAA TTTTGTAGTA CTCCTTCCCC TTTCTCTGTA AGAGAGCTTT TGTTTGTCTT GCCAAACTAA
GAAAACAAAG TCACACTTTC TATATGTGCA TTTCACCACT CCTATATTGT AAAGTTAAAT ACTTATTTTT AATCGATAGT
G

>Vigan.01G028400.01
ATGTCTGAGC CATTGGAAGA GGTTCCTTCA ATGAAAGGAG GGTGCGAAGA AGGGTTGAAC CTGAGGGCCA CTGAGCTAAG
GCTTGGGTTG CCAGGGCGTG AGTCACCTGA GAGGGAGGGC GCGTTTAAGG CTGTGGTGGT GTCTGGGTCC AAAAGGGGTT
TCTCTGATGC CATTGATGGA GGTTCTGGAA ACTGGAATGG TGGATCTGAA GTGGGTTTGG GAAAAGATGT TGTCTTGTTC
TCTCCGAGGG GAACTGTTAG TGCTGCCAAG TCTCTCACCC TCACTGCAAC AGACTGCACC AAACAGCCTA CTGTTTTGGG
TGCTTCTGTT CTCAAAGAAA CTGTTCCACA CTCTCCAAAA CCGCTGCATG AGAAGAAACC TCAGATTTCT GCTCCAGCTG
CGAAGGCGCA AGTTGTGGGG TGGCCACCAA TCCGTTCTTT CAGGAAGAAC TCAATGGCTC AGCCTCAGAA GAATGAAGAT
GCTGAGGCAG AAGCCAAGTC TGAATGTCTT TATGTTAAAG TCAGCATGGA AGGTGCTCCA TACTTGAGGA AAGTGGATCT
TAATAGTTTT GGCACTTACA AGGAACTCTC TTTGGCACTC GAAAAGATGT TTAGTTGTTT TACAATCAGT CAATGTGGCT
CTTATGGGAT TTCTTCTAGT CGAGAAAAAT TAAGTGAAAG TAGATTGATG GATCTTCTTC ATGGTTCAGA ATATGTTCTT
ACATATGAAG ACAAGGATGG AGATTGGATG CTAGTTGGTG ATGTTCCCTG GGAGATGTTC ACTGAATCTT GCAAGAGGCT
GAGGATAATG AAGAGTTCTG AAGCAATTGG GCTAGGTAGC TCCAAAATTA ATCTCTTATA CTCTGTTTTC CATCACCCAG
AATTATGA

>Vigan.01G028400.01
MSEPLEEVPS MKGGCEEGLN LRATELRLGL PGRESPEREG AFKAVVVSGS KRGFSDAIDG GSGNWNGGSE VGLGKDVVLF
SPRGTVSAAK SLTLTATDCT KQPTVLGASV LKETVPHSPK PLHEKKPQIS APAAKAQVVG WPPIRSFRKN SMAQPQKNED
AEAEAKSECL YVKVSMEGAP YLRKVDLNSF GTYKELSLAL EKMFSCFTIS QCGSYGISSS REKLSESRLM DLLHGSEYVL
TYEDKDGDWM LVGDVPWEMF TESCKRLRIM KSSEAIGLGS SKINLLYSVF HHPEL*