GBrowse Details

Vigan.01G022400.01

Basic Information:
Name: Vigan.01G022400.01
Multiple alignment
Variant Information
Position: Chr01:1434549..1436775 (- strand)
Length: 2227
Functional Information:
Description: Similar to Uncharacterized protein. [K7KRL4, Glycine max]
GO: Cellular Component: intracellular (GO:0005622)
Molecular Function: protein binding (GO:0005515)
Molecular Function: zinc ion binding (GO:0008270)
InterPro: Zinc finger, B-box (IPR000315)
CCT domain (IPR010402)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.51,0.13,2.36,91.00,0.23,6.10,0.41,6.19
Automatic updates:
Name: NM_001317436 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max zinc finger protein CONSTANS-LIKE 16-like (LOC100812563), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001317660 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max zinc finger protein CONSTANS-LIKE 16-like (LOC100793296), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:1434549..1434756 (- strand)
Length: 208
Type: three_prime_UTR
Position: Chr01:1434757..1434984 (- strand)
Length: 228
Type: CDS
Position: Chr01:1435249..1436127 (- strand)
Length: 879
Type: CDS
Position: Chr01:1436128..1436775 (- strand)
Length: 648
Type: five_prime_UTR

>Vigan.01G022400.01 class=Sequence position=Chr01:1434549..1436775 (- strand)
GAATTATAAA AGCAAGACAA CAAAAAGGGT CACGATCAAA TTTTAATACA AAACTCACAC TAACCCCAGT AGAGTAGTAG
ACCCAAAACC AAATGGGTCC ATGAGAAATC CCATAATCAG AAAGGGAACC AATGGGAATT CAGAGAACAA GATGAACATC
AAATCTCCAG CCAATAAACA CTGGGATGAG GCCAGATGGT AGGGCCAAAA CCCCCCACTA GTAAATTACC AAAAGTGCAT
GGCCAGAGAG GGAGAGCACC CTATCGAGTA AGAGAAAGTT TGATGTAACA TGGTTAACAG ATAATTTGTC TTTTAATCAT
TTGATGAGAA GTTTAATCTT TAAGTTTGTA TATATATACA GGAACATTTA TAAGAAAGAT AACCTTTTTT CTAAGAAAAA
ACCAGTCTCT TAAATAAATC CTTCTACATT AAAAGACTGT GTTTTTTTTT CTAAAATACC TCAGACAAAA CGAAAATAGA
CAGACCCCAC TGCCACACCA CGCTGTCAAG TCTGAACACA CACTAACAAT AATTGAACCA TTTTCCTATC TGATTCTGAG
CAAATAAATA TATGAAAAGC ATCTCAATAT TCCATTGTTA CTTTCATTTC AAACTTCACA AACCAAAAAA TAGCAACGAT
TGTCCACGAT GAGAGACATG AAAGATGCAG GTGCCTTGGG AGCCAAGACA GCACGAGCCT GCGATAGTTG CATAAGCAGA
AGAGCAAGGT GGTTCTGTGC GGCTGATAAT GCTTTTCTCT GCCATGGCTG CGACACCTTG GTTCATTCCG CCAACCAGTT
AGCTAGCAGG CACGAAAGGG TTCGGCTTCA AACTGCATCC TCTAAGGTAA CCACCACCAC CACGCACGCA TGGCACAGTG
GATTCACACG CAAGGCAAGA ACCCCACGTC ACAACAACAA CAAACACTTT GCACTGCAAC AACGTCTCAA AGAAGAAGTT
CTCTTCAACA ACAGCAGTGT TCTTCCCCTG GTTCCGGAGC TGGGAAGGGA AGAACAAGAA CCTGTGGTTG TGGATAATGA
CGAGACGGAG GAACAGATGC TATGTCGCGT GCCCGTGTTC GACAATTATG ATGTGAGAAC AGATGACTTG GACAGTTTTT
CCGACATGGA TTTCGCGGAG TTTGCTGCTG ATGTTGAAAA CCTACTTGAT AAAGAAGACG ATGAAATAAG TGAGCGTGTG
GGAGGGGGAG TTCAGGGTGC AATGGCGAAG GTTAAGGATG AAGAGGACGT TGATGGTGAT GTAGCGTGTT ATCTGGAGTC
AGTTTTTGAC ATGACGAACG ATGATGCCTT TCATTGGAAT AGCATTGAGT CCGTGTTGTC AGATACACGG GAAAAGGAGT
GTGTGGTGGC GAGTGACGGT GCTGTTGGTG AAGAAGGAGG AACAAAGAGA GACATATTTT TGAGACTGAA CTACGATGAG
GTTATAACCG CATGGTCTAG CCAAGGTTCT TCTCCCTGGA CAACTTCAAA CCCACCTAAG TTCAACTCTG GCTATGACTT
CTGCTTGGTA CTACCTCTAC TTCTTGTTAA TTTTCATCTT TTACATGAAT TACGTTTGTA TGTTCAGATT AAAATTTGAA
AAGTTAAGTT TGAATTAATG TTATTTTGGA AGCGGGGTTT GCAAATTTTG CTTTTTGAAA GGGTGTTGTA GGACTCTCAA
ATGAAAACCA AACGTTCCTT TCATCTCTTT GAGTAAAATG CTAGCAATTA TGCTCTTTAC ATCTTGCATG TGTGAGCTGT
GGTTGAGATG TGATTATTTA TTATTTTTCA GGGTCTGAGT GGTGTAGATG GGGACGTAAG AGCCTTAAGG GGTGACCTAG
ACGGAGGAAG AGAGGCAAGA GTGTCGAGGT ACAGAGAGAA GAGAAGGACT CGTTTGTTTG CAAAGAAAAT AAGATATGAA
GTGAGAAAGT TGAACGCAGA AAAAAGGCCC AGAATGAAAG GTCGTTTTGT GAAGAGAACA TGCTTTGTGG GGGCGAATGC
TTTTCCTGCT TACCAATGAC ATCTATCAGT TAACGGATCC ATCTTTGCTA TTTCTGCAAA TTTGGATCAA TACTTGGTTT
GGCTATATAT GTATATATAG CCTGTATTAT ATTAAACTAG TAATAATATT ACTGGGCAGT CTTAATTTTA CTAGACTTGT
TGCTTGGGAT ATTTCTGTTT ATATATATAT CTCCGGCAGG TTTAATTAGT AATTAGTACT AATTGAC

>Vigan.01G022400.01
GAATTATAAA AGCAAGACAA CAAAAAGGGT CACGATCAAA TTTTAATACA AAACTCACAC TAACCCCAGT AGAGTAGTAG
ACCCAAAACC AAATGGGTCC ATGAGAAATC CCATAATCAG AAAGGGAACC AATGGGAATT CAGAGAACAA GATGAACATC
AAATCTCCAG CCAATAAACA CTGGGATGAG GCCAGATGGT AGGGCCAAAA CCCCCCACTA GTAAATTACC AAAAGTGCAT
GGCCAGAGAG GGAGAGCACC CTATCGAGTA AGAGAAAGTT TGATGTAACA TGGTTAACAG ATAATTTGTC TTTTAATCAT
TTGATGAGAA GTTTAATCTT TAAGTTTGTA TATATATACA GGAACATTTA TAAGAAAGAT AACCTTTTTT CTAAGAAAAA
ACCAGTCTCT TAAATAAATC CTTCTACATT AAAAGACTGT GTTTTTTTTT CTAAAATACC TCAGACAAAA CGAAAATAGA
CAGACCCCAC TGCCACACCA CGCTGTCAAG TCTGAACACA CACTAACAAT AATTGAACCA TTTTCCTATC TGATTCTGAG
CAAATAAATA TATGAAAAGC ATCTCAATAT TCCATTGTTA CTTTCATTTC AAACTTCACA AACCAAAAAA TAGCAACGAT
TGTCCACGAT GAGAGACATG AAAGATGCAG GTGCCTTGGG AGCCAAGACA GCACGAGCCT GCGATAGTTG CATAAGCAGA
AGAGCAAGGT GGTTCTGTGC GGCTGATAAT GCTTTTCTCT GCCATGGCTG CGACACCTTG GTTCATTCCG CCAACCAGTT
AGCTAGCAGG CACGAAAGGG TTCGGCTTCA AACTGCATCC TCTAAGGTAA CCACCACCAC CACGCACGCA TGGCACAGTG
GATTCACACG CAAGGCAAGA ACCCCACGTC ACAACAACAA CAAACACTTT GCACTGCAAC AACGTCTCAA AGAAGAAGTT
CTCTTCAACA ACAGCAGTGT TCTTCCCCTG GTTCCGGAGC TGGGAAGGGA AGAACAAGAA CCTGTGGTTG TGGATAATGA
CGAGACGGAG GAACAGATGC TATGTCGCGT GCCCGTGTTC GACAATTATG ATGTGAGAAC AGATGACTTG GACAGTTTTT
CCGACATGGA TTTCGCGGAG TTTGCTGCTG ATGTTGAAAA CCTACTTGAT AAAGAAGACG ATGAAATAAG TGAGCGTGTG
GGAGGGGGAG TTCAGGGTGC AATGGCGAAG GTTAAGGATG AAGAGGACGT TGATGGTGAT GTAGCGTGTT ATCTGGAGTC
AGTTTTTGAC ATGACGAACG ATGATGCCTT TCATTGGAAT AGCATTGAGT CCGTGTTGTC AGATACACGG GAAAAGGAGT
GTGTGGTGGC GAGTGACGGT GCTGTTGGTG AAGAAGGAGG AACAAAGAGA GACATATTTT TGAGACTGAA CTACGATGAG
GTTATAACCG CATGGTCTAG CCAAGGTTCT TCTCCCTGGA CAACTTCAAA CCCACCTAAG TTCAACTCTG GCTATGACTT
CTGCTTGGGT CTGAGTGGTG TAGATGGGGA CGTAAGAGCC TTAAGGGGTG ACCTAGACGG AGGAAGAGAG GCAAGAGTGT
CGAGGTACAG AGAGAAGAGA AGGACTCGTT TGTTTGCAAA GAAAATAAGA TATGAAGTGA GAAAGTTGAA CGCAGAAAAA
AGGCCCAGAA TGAAAGGTCG TTTTGTGAAG AGAACATGCT TTGTGGGGGC GAATGCTTTT CCTGCTTACC AATGACATCT
ATCAGTTAAC GGATCCATCT TTGCTATTTC TGCAAATTTG GATCAATACT TGGTTTGGCT ATATATGTAT ATATAGCCTG
TATTATATTA AACTAGTAAT AATATTACTG GGCAGTCTTA ATTTTACTAG ACTTGTTGCT TGGGATATTT CTGTTTATAT
ATATATCTCC GGCAGGTTTA ATTAGTAATT AGTACTAATT GAC

>Vigan.01G022400.01
ATGAGAGACA TGAAAGATGC AGGTGCCTTG GGAGCCAAGA CAGCACGAGC CTGCGATAGT TGCATAAGCA GAAGAGCAAG
GTGGTTCTGT GCGGCTGATA ATGCTTTTCT CTGCCATGGC TGCGACACCT TGGTTCATTC CGCCAACCAG TTAGCTAGCA
GGCACGAAAG GGTTCGGCTT CAAACTGCAT CCTCTAAGGT AACCACCACC ACCACGCACG CATGGCACAG TGGATTCACA
CGCAAGGCAA GAACCCCACG TCACAACAAC AACAAACACT TTGCACTGCA ACAACGTCTC AAAGAAGAAG TTCTCTTCAA
CAACAGCAGT GTTCTTCCCC TGGTTCCGGA GCTGGGAAGG GAAGAACAAG AACCTGTGGT TGTGGATAAT GACGAGACGG
AGGAACAGAT GCTATGTCGC GTGCCCGTGT TCGACAATTA TGATGTGAGA ACAGATGACT TGGACAGTTT TTCCGACATG
GATTTCGCGG AGTTTGCTGC TGATGTTGAA AACCTACTTG ATAAAGAAGA CGATGAAATA AGTGAGCGTG TGGGAGGGGG
AGTTCAGGGT GCAATGGCGA AGGTTAAGGA TGAAGAGGAC GTTGATGGTG ATGTAGCGTG TTATCTGGAG TCAGTTTTTG
ACATGACGAA CGATGATGCC TTTCATTGGA ATAGCATTGA GTCCGTGTTG TCAGATACAC GGGAAAAGGA GTGTGTGGTG
GCGAGTGACG GTGCTGTTGG TGAAGAAGGA GGAACAAAGA GAGACATATT TTTGAGACTG AACTACGATG AGGTTATAAC
CGCATGGTCT AGCCAAGGTT CTTCTCCCTG GACAACTTCA AACCCACCTA AGTTCAACTC TGGCTATGAC TTCTGCTTGG
GTCTGAGTGG TGTAGATGGG GACGTAAGAG CCTTAAGGGG TGACCTAGAC GGAGGAAGAG AGGCAAGAGT GTCGAGGTAC
AGAGAGAAGA GAAGGACTCG TTTGTTTGCA AAGAAAATAA GATATGAAGT GAGAAAGTTG AACGCAGAAA AAAGGCCCAG
AATGAAAGGT CGTTTTGTGA AGAGAACATG CTTTGTGGGG GCGAATGCTT TTCCTGCTTA CCAATGA

>Vigan.01G022400.01
MRDMKDAGAL GAKTARACDS CISRRARWFC AADNAFLCHG CDTLVHSANQ LASRHERVRL QTASSKVTTT TTHAWHSGFT
RKARTPRHNN NKHFALQQRL KEEVLFNNSS VLPLVPELGR EEQEPVVVDN DETEEQMLCR VPVFDNYDVR TDDLDSFSDM
DFAEFAADVE NLLDKEDDEI SERVGGGVQG AMAKVKDEED VDGDVACYLE SVFDMTNDDA FHWNSIESVL SDTREKECVV
ASDGAVGEEG GTKRDIFLRL NYDEVITAWS SQGSSPWTTS NPPKFNSGYD FCLGLSGVDG DVRALRGDLD GGREARVSRY
REKRRTRLFA KKIRYEVRKL NAEKRPRMKG RFVKRTCFVG ANAFPAYQ*