GBrowse Details

Vigan.01G014800.01

Basic Information:
Name: Vigan.01G014800.01
Multiple alignment
Variant Information
Position: Chr01:896633..900406 (+ strand)
Length: 3774
Functional Information:
Description: Similar to Circadian clock-associated FKF1. [B9MST1, Glycine max]
GO: Biological Process: signal transduction (GO:0007165)
Molecular Function: signal transducer activity (GO:0004871)
Molecular Function: protein binding (GO:0005515)
InterPro: PAS domain (IPR000014)
PAC motif (IPR001610)
F-box domain (IPR001810)
Galactose oxidase/kelch, beta-propeller (IPR011043)
Kelch repeat type 2 (IPR011498)
Kelch-type beta propeller (IPR015915)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:90.41,94.14,0.79,17.27,6.65,25.20,30.66,0.92
Arabidopsis thaliana homolog: AT1G68050.1, AT2G18915.2, AT5G57360.2
Automatic updates:
Name: NM_001248957 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max circadian clock-associated FKF1 (FKF1), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:896633..896916 (+ strand)
Length: 284
Type: five_prime_UTR
Position: Chr01:896917..897191 (+ strand)
Length: 275
Type: CDS
Position: Chr01:898490..900095 (+ strand)
Length: 1606
Type: CDS
Position: Chr01:900096..900406 (+ strand)
Length: 311
Type: three_prime_UTR

>Vigan.01G014800.01 class=Sequence position=Chr01:896633..900406 (+ strand)
GTCGGAATTC ACTTCCAGAT ATTTTCTATC AAAATATCAT CTCACCTTAG TGTTCCCCAC GTTGACTCCA TTCACCTTCA
CATTCGCCCT TCTTTTCCCC CTTAAATTAC CAATCTGCCA CTATTCTCAT CTCCCCCCAT ACCCACTCGT AATTTCCCTC
TCTCTTCGGG GCATTTCCGT CACATCATTT AACCGACTTT AACGAGAAGA GCGAGAGAGA AAAGAAAGAG AGTTTGGTGT
TATTTTTCAT TGTTGCAGTT GCAGAAGAAG AAGAAAAAGA AAAAATGGCT ATGGCAAAAG AGAAAGAGGA AGATGAAGAG
GAGGTTCAGA CCTGTGGGAA GAGGTTGAAA TGCATGAGGA ATGATGAAGA AGATGATAAT GGTGTTGATG AAGAAGAGAG
CGAGCTTCCT CTGAAACCCG GGATTTTCTT CTACCCGACA ACCCCAACTT CCTTTGTTGT CTCTGATGCT CTTGAACCTG
ATTTCCCGGT CATATATGTC AACAAGGTCT TTGAAATCTC CACTGGGTAT CGTGCCGACG AGGCCCTCGG TCTCAACTGG
TTAGAACTTT CTTCCATTTC TCCCTCTTTT TTGTGCAAAT TCCGACCTCT TAACATCTGG GGTTTTTCTG TTTTGTGCAT
TTGACTCTGA AATTTACCTG GTTGGGTTGA ATTAAACTTC CTCAAACTAG AACCCCTTTC TGTGCCTGTC AGATTGTTCT
GTTTATTCAG ATCTATGTTT AAGCTCAGAT TTTTTTTTGT GTTCCATTTT GTCATCTAGT TAAGAGATGA GATTCTACTG
TGTCAAAATT CATAATTCAG AAACATCTTA TGGCTTTTGC GAACTACATT TCACTGAACT GTGAATTCTG ATTGGTAGTG
TTTTATCCTC TGTTGTCCAT TTTTCGGCAA TTTTTTATCT GCTATGGTTA GCTCTTCTAT TGAACTTCTT GTTTCTCCTT
TTTTTTTTAT CATCTCTCAA GCTGGAGTAT TTTTTTTTTC GTCCTTCCTT TTGGAACCCT TGTTTTTTAC CTTGTTACAA
TATGATTTGT GAAAGTTGCG AATGGCCGAT ACTTCTATCT TCCTTGTTAG TGTCATAATA TTATTGCTGG TGTGAATTTT
CAACTAAATT TATTAAGTAT CCACAATTTT TATTAATGTT CAAATGTAGC AAAGATACAT GTGACTTTAA AATAATTTGA
AAATGTCATG TTTTGTCCAT TGAAGATAGC AATTTTCTAT CAAATTTGGT GGAATGTTTG GTTTTAAGAG TTTTTGGTGT
CTATAGTTTG AGTTTGGTTT AGTTTTGGTT CCCAGATTAA AAGTGATTAT TATTTCAGGG TCCCTAATTT GAAGAAAGTT
CACATTTAGT CCTTAAGATT TATTTTCTGT GATCATCTAA GAACTAAAAC AGGGTTGTGA AACTAAAGAA TAACTTTTTA
ATTTAGATGA CCAAAAACAA ACTTGAATCA AATTTAGGGA CCTGAAAATA TTTAAGTCTT AAGAAAATGG ATACTTAAAA
TATTATGATA TAAGGTTTGT CAACTGTTTG AGCCTTTGCT TCAACTAACT CCTGAGAAAA TTTTTGATAG AGGATATTGA
TTAAAAATGT GACATTCTTG TTTTCAACAG TAGGGAAGGT AGCCGGTTAA GCTTTTGAGT TTGCATTCCT GTAAATCCTT
CTTGCAGTGC CTTACTCAAT CACCAAATTT GAAACAATTT GTTTTGAAAC TTTAGTTTTA AGTGTATCAA ATGGCATCCT
GTGATCCATA ATGGGATAAG ACTTTGTTAT ATACTGATCA GTCAGGGTTA TTTTAGAAGA ATGGCCAATA ATTGTTTTAA
AATTTCTTTT GTTTCAGTCG GTTCTTACAG TATAGAGATC CTCGAGCTCA GAGGCGACAC CCTTTGGTGG ACCCTGTTGT
TGTGTCTGAG ATCAGAAGAT GTCTTGAGGA AGGTGTTGAG TTCCAAGGTG AACTTTTGAA TTTCAGAAAG GACGGCACGC
CATTGGTGAA CAGACTAAGA CTTGCACCAA TTCATGACGA TGATGGGACT GTGACACACG TAATAGGTAT CCAACTCTTT
TCTGAGGCAA ATATAGATCT GAACCGACTC TCATATCCAG TATTCAAAGA GACTTGCAAT CAGGATTTTT CCAAGAATGG
TAAATATTCT CCAAAGGGTG GACAATGTTT GTACAGTCAG CAGCAAGAGA TGTGCGGCAT TCTTCAGCTT TCTGATGAAG
TCTTGGCTCA CAACATTTTG TCACGCTTGA CACCAAGGGA TGTTGCATCC ATTGGGTCTG TATGTAGAAG AATACGTCAG
TTAACAAAGA ATGAGCATGT CAGGAAGATG GTATGTCAGA ATGCTTGGGG CAAAGAAGTG ACAGGAACAT TGGAACTGAT
GACCAAGAAG TTAGGATGGG GTCGTCTGAC TCGGGAACTC ACCACCCTGG AGGCTGTTTG TTGGAGAAAA CTGACAGTTG
GAGGAGCAGT GGAGCCTTCA CGCTGCAATT TCAGTGCTTG TGCTGCAGGA AACCGACTAG TATTGTTTGG AGGTGAAGGA
GTGGACATGC AGCCTATGGA TGACACTTTT GTTCTAAATC TTGACGCTAA AAATCCAGAA TGGCGCAGGG TTAGTGTGAA
ATCATCCCCA CCTGGAAGAT GGGGCCACAC ACTCTCATGT TTAAATGGTT CTTGGTTGGT GGTTTTTGGA GGCTGTGGTA
GGCAAGGACT GCTCAATGAT GTGTTTGTGC TTGATTTGGA TGCTCAACAG CCAACATGGA GGGAAGTCTG TGGTGGAACC
CCACCTCTTC CCAGATCATG GCATAGTTCT TGCACAATTG AAGGGTCGAA ATTGGTGGTC TCCGGTGGGT GCACGGATGC
AGGTGTACTT CTCAGTGACA CGTATTTACT GGATCTCACA ACGGAGAATC CAACATGGAG AGAAATTCCA ACATCATGGG
CTCCTCCATC TCGGTTGGGG CACTCACTCT CGGTGTATGG GAGGACAAAG CTTCTGATGT TTGGTGGACT TGCCAAGAGT
GGACACTTGC GGCTACGATC AGGTGAGGCT TATACAATTG ACTTGGAAGA TGAACAACCA CAGTGGAGGC AGCTAGAATG
TAGTGCATTC ACGGGATTAG CAAGTCAAAA TGCTGTTGTT CCTCCTCCTA GACTGGATCA TGTTGCTGTG AGTATGCCTT
GTGGGAGGAT CATTATATTT GGAGGTTCCA TTGCGGGTCT TCACTCACCA TCTCAGCTCT TTCTCTTGGA CCCTTCTGAA
GAGAAACCAT CTTGGAGGAT CCTCAATGTT CCAGGGCAAC CACCTAAGTT TGCTTGGGGT CATAGCACTT GTGTGGTTGG
AGGGACTAGG GTACTGGTGT TGGGGGGACA CACTGGGGAG GAGTGGATAC TCAATGAGTT GCATGAGTTA TGCCTGGCAA
GTCGTCAGGA TTCTGACCTG TAAAGGGCAT AAAACCAGAC CCTCTTCTCT CAGAACAAGA TTTTTGTTGC AAAATAGGTT
TTGGGTGGGT TTTGTTTAGC AGTTTGGTTT TGTATATGAA CTATATCATA TGATTGTTGT ATGACATGAC GTGTGTATTA
CCACTGTTTT TTGAATGATG TGTGATGCCA TCTGGCTCCT CTACCCTCTA TGACTATGAC ACTAGGAAAC AAACTTCTGT
ACATCATAGA GTTCTTGCCT CTTGTATCAT CCCTCCTTTT TCTTTTACTA TTAGTTTTGT TAATAATTAA TTCTTTTATT
ATTGTTTCTT ATCA

>Vigan.01G014800.01
GTCGGAATTC ACTTCCAGAT ATTTTCTATC AAAATATCAT CTCACCTTAG TGTTCCCCAC GTTGACTCCA TTCACCTTCA
CATTCGCCCT TCTTTTCCCC CTTAAATTAC CAATCTGCCA CTATTCTCAT CTCCCCCCAT ACCCACTCGT AATTTCCCTC
TCTCTTCGGG GCATTTCCGT CACATCATTT AACCGACTTT AACGAGAAGA GCGAGAGAGA AAAGAAAGAG AGTTTGGTGT
TATTTTTCAT TGTTGCAGTT GCAGAAGAAG AAGAAAAAGA AAAAATGGCT ATGGCAAAAG AGAAAGAGGA AGATGAAGAG
GAGGTTCAGA CCTGTGGGAA GAGGTTGAAA TGCATGAGGA ATGATGAAGA AGATGATAAT GGTGTTGATG AAGAAGAGAG
CGAGCTTCCT CTGAAACCCG GGATTTTCTT CTACCCGACA ACCCCAACTT CCTTTGTTGT CTCTGATGCT CTTGAACCTG
ATTTCCCGGT CATATATGTC AACAAGGTCT TTGAAATCTC CACTGGGTAT CGTGCCGACG AGGCCCTCGG TCTCAACTGT
CGGTTCTTAC AGTATAGAGA TCCTCGAGCT CAGAGGCGAC ACCCTTTGGT GGACCCTGTT GTTGTGTCTG AGATCAGAAG
ATGTCTTGAG GAAGGTGTTG AGTTCCAAGG TGAACTTTTG AATTTCAGAA AGGACGGCAC GCCATTGGTG AACAGACTAA
GACTTGCACC AATTCATGAC GATGATGGGA CTGTGACACA CGTAATAGGT ATCCAACTCT TTTCTGAGGC AAATATAGAT
CTGAACCGAC TCTCATATCC AGTATTCAAA GAGACTTGCA ATCAGGATTT TTCCAAGAAT GGTAAATATT CTCCAAAGGG
TGGACAATGT TTGTACAGTC AGCAGCAAGA GATGTGCGGC ATTCTTCAGC TTTCTGATGA AGTCTTGGCT CACAACATTT
TGTCACGCTT GACACCAAGG GATGTTGCAT CCATTGGGTC TGTATGTAGA AGAATACGTC AGTTAACAAA GAATGAGCAT
GTCAGGAAGA TGGTATGTCA GAATGCTTGG GGCAAAGAAG TGACAGGAAC ATTGGAACTG ATGACCAAGA AGTTAGGATG
GGGTCGTCTG ACTCGGGAAC TCACCACCCT GGAGGCTGTT TGTTGGAGAA AACTGACAGT TGGAGGAGCA GTGGAGCCTT
CACGCTGCAA TTTCAGTGCT TGTGCTGCAG GAAACCGACT AGTATTGTTT GGAGGTGAAG GAGTGGACAT GCAGCCTATG
GATGACACTT TTGTTCTAAA TCTTGACGCT AAAAATCCAG AATGGCGCAG GGTTAGTGTG AAATCATCCC CACCTGGAAG
ATGGGGCCAC ACACTCTCAT GTTTAAATGG TTCTTGGTTG GTGGTTTTTG GAGGCTGTGG TAGGCAAGGA CTGCTCAATG
ATGTGTTTGT GCTTGATTTG GATGCTCAAC AGCCAACATG GAGGGAAGTC TGTGGTGGAA CCCCACCTCT TCCCAGATCA
TGGCATAGTT CTTGCACAAT TGAAGGGTCG AAATTGGTGG TCTCCGGTGG GTGCACGGAT GCAGGTGTAC TTCTCAGTGA
CACGTATTTA CTGGATCTCA CAACGGAGAA TCCAACATGG AGAGAAATTC CAACATCATG GGCTCCTCCA TCTCGGTTGG
GGCACTCACT CTCGGTGTAT GGGAGGACAA AGCTTCTGAT GTTTGGTGGA CTTGCCAAGA GTGGACACTT GCGGCTACGA
TCAGGTGAGG CTTATACAAT TGACTTGGAA GATGAACAAC CACAGTGGAG GCAGCTAGAA TGTAGTGCAT TCACGGGATT
AGCAAGTCAA AATGCTGTTG TTCCTCCTCC TAGACTGGAT CATGTTGCTG TGAGTATGCC TTGTGGGAGG ATCATTATAT
TTGGAGGTTC CATTGCGGGT CTTCACTCAC CATCTCAGCT CTTTCTCTTG GACCCTTCTG AAGAGAAACC ATCTTGGAGG
ATCCTCAATG TTCCAGGGCA ACCACCTAAG TTTGCTTGGG GTCATAGCAC TTGTGTGGTT GGAGGGACTA GGGTACTGGT
GTTGGGGGGA CACACTGGGG AGGAGTGGAT ACTCAATGAG TTGCATGAGT TATGCCTGGC AAGTCGTCAG GATTCTGACC
TGTAAAGGGC ATAAAACCAG ACCCTCTTCT CTCAGAACAA GATTTTTGTT GCAAAATAGG TTTTGGGTGG GTTTTGTTTA
GCAGTTTGGT TTTGTATATG AACTATATCA TATGATTGTT GTATGACATG ACGTGTGTAT TACCACTGTT TTTTGAATGA
TGTGTGATGC CATCTGGCTC CTCTACCCTC TATGACTATG ACACTAGGAA ACAAACTTCT GTACATCATA GAGTTCTTGC
CTCTTGTATC ATCCCTCCTT TTTCTTTTAC TATTAGTTTT GTTAATAATT AATTCTTTTA TTATTGTTTC TTATCA

>Vigan.01G014800.01
ATGGCTATGG CAAAAGAGAA AGAGGAAGAT GAAGAGGAGG TTCAGACCTG TGGGAAGAGG TTGAAATGCA TGAGGAATGA
TGAAGAAGAT GATAATGGTG TTGATGAAGA AGAGAGCGAG CTTCCTCTGA AACCCGGGAT TTTCTTCTAC CCGACAACCC
CAACTTCCTT TGTTGTCTCT GATGCTCTTG AACCTGATTT CCCGGTCATA TATGTCAACA AGGTCTTTGA AATCTCCACT
GGGTATCGTG CCGACGAGGC CCTCGGTCTC AACTGTCGGT TCTTACAGTA TAGAGATCCT CGAGCTCAGA GGCGACACCC
TTTGGTGGAC CCTGTTGTTG TGTCTGAGAT CAGAAGATGT CTTGAGGAAG GTGTTGAGTT CCAAGGTGAA CTTTTGAATT
TCAGAAAGGA CGGCACGCCA TTGGTGAACA GACTAAGACT TGCACCAATT CATGACGATG ATGGGACTGT GACACACGTA
ATAGGTATCC AACTCTTTTC TGAGGCAAAT ATAGATCTGA ACCGACTCTC ATATCCAGTA TTCAAAGAGA CTTGCAATCA
GGATTTTTCC AAGAATGGTA AATATTCTCC AAAGGGTGGA CAATGTTTGT ACAGTCAGCA GCAAGAGATG TGCGGCATTC
TTCAGCTTTC TGATGAAGTC TTGGCTCACA ACATTTTGTC ACGCTTGACA CCAAGGGATG TTGCATCCAT TGGGTCTGTA
TGTAGAAGAA TACGTCAGTT AACAAAGAAT GAGCATGTCA GGAAGATGGT ATGTCAGAAT GCTTGGGGCA AAGAAGTGAC
AGGAACATTG GAACTGATGA CCAAGAAGTT AGGATGGGGT CGTCTGACTC GGGAACTCAC CACCCTGGAG GCTGTTTGTT
GGAGAAAACT GACAGTTGGA GGAGCAGTGG AGCCTTCACG CTGCAATTTC AGTGCTTGTG CTGCAGGAAA CCGACTAGTA
TTGTTTGGAG GTGAAGGAGT GGACATGCAG CCTATGGATG ACACTTTTGT TCTAAATCTT GACGCTAAAA ATCCAGAATG
GCGCAGGGTT AGTGTGAAAT CATCCCCACC TGGAAGATGG GGCCACACAC TCTCATGTTT AAATGGTTCT TGGTTGGTGG
TTTTTGGAGG CTGTGGTAGG CAAGGACTGC TCAATGATGT GTTTGTGCTT GATTTGGATG CTCAACAGCC AACATGGAGG
GAAGTCTGTG GTGGAACCCC ACCTCTTCCC AGATCATGGC ATAGTTCTTG CACAATTGAA GGGTCGAAAT TGGTGGTCTC
CGGTGGGTGC ACGGATGCAG GTGTACTTCT CAGTGACACG TATTTACTGG ATCTCACAAC GGAGAATCCA ACATGGAGAG
AAATTCCAAC ATCATGGGCT CCTCCATCTC GGTTGGGGCA CTCACTCTCG GTGTATGGGA GGACAAAGCT TCTGATGTTT
GGTGGACTTG CCAAGAGTGG ACACTTGCGG CTACGATCAG GTGAGGCTTA TACAATTGAC TTGGAAGATG AACAACCACA
GTGGAGGCAG CTAGAATGTA GTGCATTCAC GGGATTAGCA AGTCAAAATG CTGTTGTTCC TCCTCCTAGA CTGGATCATG
TTGCTGTGAG TATGCCTTGT GGGAGGATCA TTATATTTGG AGGTTCCATT GCGGGTCTTC ACTCACCATC TCAGCTCTTT
CTCTTGGACC CTTCTGAAGA GAAACCATCT TGGAGGATCC TCAATGTTCC AGGGCAACCA CCTAAGTTTG CTTGGGGTCA
TAGCACTTGT GTGGTTGGAG GGACTAGGGT ACTGGTGTTG GGGGGACACA CTGGGGAGGA GTGGATACTC AATGAGTTGC
ATGAGTTATG CCTGGCAAGT CGTCAGGATT CTGACCTGTA A

>Vigan.01G014800.01
MAMAKEKEED EEEVQTCGKR LKCMRNDEED DNGVDEEESE LPLKPGIFFY PTTPTSFVVS DALEPDFPVI YVNKVFEIST
GYRADEALGL NCRFLQYRDP RAQRRHPLVD PVVVSEIRRC LEEGVEFQGE LLNFRKDGTP LVNRLRLAPI HDDDGTVTHV
IGIQLFSEAN IDLNRLSYPV FKETCNQDFS KNGKYSPKGG QCLYSQQQEM CGILQLSDEV LAHNILSRLT PRDVASIGSV
CRRIRQLTKN EHVRKMVCQN AWGKEVTGTL ELMTKKLGWG RLTRELTTLE AVCWRKLTVG GAVEPSRCNF SACAAGNRLV
LFGGEGVDMQ PMDDTFVLNL DAKNPEWRRV SVKSSPPGRW GHTLSCLNGS WLVVFGGCGR QGLLNDVFVL DLDAQQPTWR
EVCGGTPPLP RSWHSSCTIE GSKLVVSGGC TDAGVLLSDT YLLDLTTENP TWREIPTSWA PPSRLGHSLS VYGRTKLLMF
GGLAKSGHLR LRSGEAYTID LEDEQPQWRQ LECSAFTGLA SQNAVVPPPR LDHVAVSMPC GRIIIFGGSI AGLHSPSQLF
LLDPSEEKPS WRILNVPGQP PKFAWGHSTC VVGGTRVLVL GGHTGEEWIL NELHELCLAS RQDSDL*