GBrowse Details

Vigan.01G011400.01

Basic Information:
Name: Vigan.01G011400.01
Multiple alignment
Variant Information
Position: Chr01:710274..715512 (+ strand)
Length: 5239
Functional Information:
Description: Similar to Uncharacterized protein. [I1KQE2, Glycine max]
GO: Biological Process: transmembrane transport (GO:0055085)
Cellular Component: mitochondrial outer membrane (GO:0005741)
InterPro: Porin domain (IPR023614)
Eukaryotic porin/Tom40 (IPR027246)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:34.30,42.00,29.08,18.74,52.90,62.44,50.74,21.16
Arabidopsis thaliana homolog: AT3G20000.1
Automatic updates:
Name: NM_001255676 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max mitochondrial import receptor subunit TOM40 homolog 1-like (RSDV1-LIKE), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:710274..710531 (+ strand)
Length: 258
Type: five_prime_UTR
Position: Chr01:710532..710640 (+ strand)
Length: 109
Type: CDS
Position: Chr01:710726..710807 (+ strand)
Length: 82
Type: CDS
Position: Chr01:710893..710995 (+ strand)
Length: 103
Type: CDS
Position: Chr01:711078..711173 (+ strand)
Length: 96
Type: CDS
Position: Chr01:711521..711571 (+ strand)
Length: 51
Type: CDS
Position: Chr01:711758..711823 (+ strand)
Length: 66
Type: CDS
Position: Chr01:713298..713399 (+ strand)
Length: 102
Type: CDS
Position: Chr01:713685..713753 (+ strand)
Length: 69
Type: CDS
Position: Chr01:713830..713913 (+ strand)
Length: 84
Type: CDS
Position: Chr01:715084..715179 (+ strand)
Length: 96
Type: CDS
Position: Chr01:715288..715344 (+ strand)
Length: 57
Type: CDS
Position: Chr01:715345..715512 (+ strand)
Length: 168
Type: three_prime_UTR

>Vigan.01G011400.01 class=Sequence position=Chr01:710274..715512 (+ strand)
GTGTGTAATG GCGTGATTGG GAGGAAGTAA ACTGCTAGGT ATAATGATTG AAAACGGGTC GGGTCGGTTC GGGTGGGTTA
AAGTTTGAGA TGGAAACACA ATGTGGTGTA GTGAGTATAA GCTTGTCCTA CTCGGAAAGT GAATTAGGGT TTTAGCAGTG
GTGGAAGGTT GTTGAGGACT GAGGAGGGTT TTAGAATCAG ATTTGTTCGT TCCTTCTCTC TCTCTCTCAC TCTCTTTCAC
TCTCTCTCTG TGATTCCAAT GGAGACTCCT GTTCCTCCTC CTCCTGCCGC CGCCGCCGAT AAAGTGGTGG ATTACTTCAA
TCTTCCATGT CCAATTCCCT TCGAGGAGCT TCATCGCGAA GCTATGAGTT AGTTCCTTTC TTCGTTTCAA TCTCCCGGCT
CAGTTTGATT TTTACTAGTT TGTAATGTTT TAATTTGTTC GTTTTCCGAC AGTGTCGTTG AAGCCAGATC TTTTTGAGGG
CATGCGTTTT GATTTCACCA AGATGCTCAA TCAGAAGTTC ACTCTCAATC ACAGGTTTCT TTACTTTTCT CTTCTTTCTT
TCTATTTTTA TTTTAATTCG ATTTAGTTGT GTAAAGCCTG TTTGTTGTTG GGTGATCAGC GTCTTGATGG GACCAACTGA
GATTCCCTCT CAGTCGACGG AGACAATTAA GATTCCAACT GCTCACTATG AGTTTGGCTC AACCTTCATT GATCATCCTA
GGGTAATTGG GTTTCGTTCA ATGGCCTTTC AGCTTGTTTT TTTTTTTTGT ATGGTGCTTT TTCATTGATG ATGCTGTTCT
ACAGTTGTTG CTTTGGGGGA GGATTTTGAC TGACGGGAGG CTCAATGCTA GAGTCAAGTG TGATTTGTCT GAAAATCTCA
CGTTTAAAGC CAATGCTCAG GTACGTCTGT GATCGTTTCA AGTATGAGTA ATGCTGCCTG TAATTTGCCT GTTTTTCGCA
TCCTTTGTGC TTTGCTACAT CTTTGGTTAG TTAACATATA TTTTTTAGAT TCTATCGTGA AAACAAGAGT TTGTACTATT
TTCTGATTTC TACTTTCAAG CGGTGCCACT TGTGACTTAT TAGTGCTAGG AAAAGTATGT AGAAGTGCCG TTGAATATTC
GATCTATTTC TTTGCGAAGT ATTTGGTTTA TTCGACCTCT TACTCCTGCC CATTCTCATG TTTTTTTCAC TTTTTCTTTC
TTTTCGTCTT TTCTCATTAT AATCTTCTCT CTTGTTTGCA TGTACAGCTT ACGAATGAAC CACATATGTC TCATGGGATG
TTCAACTTTG ATTACAAGGT TAGCTAGTTT ACCATTTCTT GACTAAGTCA TTCAATGCCT CCCTACTCTC CTAGTCAATT
TTTTTGCACG TTCTTTTCGT TAAATTTTAT CATTTGATAG ACATTTATTG CGACCGAGTT TCTCAATAGA TGTTCTATGT
ATATCTTTTC CCTGTTTAAA GATTCATTAT ATTATATTTT CCAGGGAAAA GACTATAGGA CACAGTTTCA ACTCGGGAAT
GGAGCCTTAC TTGGAGCAAG TTATATTCAG GTGTGGAATC TCCAGACGTT TTGCAGTATT TTTTTCTAAC AAATAAATTG
TGAAGTATTT GTTTATTCTG GTAAATACAC TGATTTGGTT CTTATACTAT TCTCTTGTTT AAATGCTTAT TTTGAAGTAT
TTGTTCAATG ACGTCCTTTT TATCTTGTTT CTGAAAATTT GCAACTTTTT GCAAGCAAAA TGGTTGATGA GGGGAGGTGG
CAGCTGATGG GAGAAAGAGG CTAGTAATTT TTTTTCTTGG GGAAGAGGGG CTGATGAGCG AATCTAGAAA GAGGCTAGGT
ATATTTTAGT TTTCCGAGTG ATCCTGAATT GGGTTAGTCT CCACCCTAAA CAATCCCACA ATTGGGAGGT TTATTTTATT
AGACATATTA TCATGTATAT GCTGTTATAA TAGTATTAAA GAAGTACTGT ACAAGACTTA GGAAATATTG AAAATATATT
AATATGTAAT TGTTGTGTCA TATTACAAGC CAAATATCAA ATAATATTTA AAAAATTATG AACACAATGT TACAAATAAA
AAACTATAAT TATTAAATCA ATTAGTATGT ATATTAGAGT TTGGCTATAT TGCTGTTCTG CTAACCACTA CAGCAATTTT
TGGAGGTGGC TGCCCATGTA GCTGCCTACT ATTAACTATG GGAAATTGGC TATCAGTCAT CAACATTTCT TCTAAAAAAG
TGCGTCAACA TTTCCTTTAA AATGGTTTTC TTGTTTAGAT CTTTAGTTTC ATTCAGTTCC TGTGGACATT ATATGCTTCC
TTGGAAATAA TTTTGCTTGT CACTTTTTTA TTTTATTTTA TTGTTTCCGG GGAAGGGGAG GGGTTAGATG ATTTATAATT
AGTGACATTA GATTTAACTA GCTATTAATA TCATCTGGGT TTCAAGTAGC ACCACAATAG CAGCGTAGCA ATCCCTGGCT
TCTATTGGTG CTGTAGTGAA GCTGTTCCTT TCTGCAGATG CTTTGGGGAT AGTAGGAATT GTTTGCGATA GCTCCATTCC
CACAAGTGCT GAGCCTCGCT CTTGTGCTGT TTTATTTGCC TCAATTTTAC TTTTTCTATT TTACATTTTC GTTTAAAGCA
TAGTATAGTA CAATAATAAC GATAGTAATA AAAAAAATTC AGAGTAACTA CTACATTGCT AACAAGATTT TGGGAAGACC
ACTCTGCACT GCTTCTCCTG ATTTGACACT GATCGATATT TAATATTTGA CAGTTGTAGA ATTTCTCTCA TCTAATTGGC
CTATTGTTGT GTGAGATGCA TTTGCTATTG TGATCAGTTC CTTCCTTCTG GTTTGCATTT ATGCAATATT TACATTATGT
CTGCTTTAGA GCATTATTCT TCTAAGAAAT TGCTGAGCAT TACTCTTTTA ATTTCCTTAA CCGCTTTATA TTTTATAAGT
GCTACAATTG ATGCATGTCT GTGAACTTGT TTAAATCATT ACTCAAAACA TCATCTTTGT GCAGAGTGTG ACACAGCACT
TATCATTGGG TGGGGAGGTA TTTTGGGCTG GTCAGCATAG GAAGTCTGGT GTTGGTTATG CTGCTCGCTA CAACACTGAT
AAAATGGTAT GCTTGTGCAA GACTTAGCCC CCTGTTCAAA CTCTTTCATA TTTGTTTATT GATCCTTAAA TTGCTATATT
GATATTGGCA AATTTTAATA GTTTGTTATT AAAAGCTGCC TGGACAAAAG CACCAATACA CTTGCACAAA TTATTTAGAG
GATATGCTAT GTTTTTATTT GTCTACGTGT GAACCATTGG TTATATTGCA TTGTATCTTA TTCTATTTTT CAGTGATTCC
TTTTCCCTTA GTGATTACTA CTAATTCTTT CGTTTGCATT CCTACATTTA GGTTGCTACA GGGCAAGTTG CTAGCACTGG
AATGGTTCTT CTAAGCTATG TTCAGAAGGT ATCTGAGAAG GTAAGTTGAT AATCACATTG TAGATTTGTG TTGTTTTCAA
TTCAAATTTA GTTTTTACAC AAAATGTTCC TTTCAGGTTT CTCTAGCATC TGAATTTATG TGCAACTACT TGTCAAGAGA
TGTCACGGCT AGCTTTGGTT ATGACTACAT CCTTAGACAG GTAGTTTTCT CTTTCATGAA TTCAATCGTT GATTGGAATT
TGAATGTAAT ACAGCATGAA TGTGGTTATG TTAACTTGTG AACCCGTTAG ACGTTTTATT TCACATTGGT TATAATAGAG
ATTTCTTGTG CATCTATATC CGTGCATTTG GGTTTAAAAC TTGCAGGAAT GGAAGGGATG AAGGAAAAAT TGACATTTAC
CAACCCCTAC ATCACATCTA GATACCTTTT CAAGTTTCAC TCTCCCTTGC TGTTCAATTC AATTTAACAG CAGACATAAT
AACACCATCA AAAACTTGCG AATTTAATAT ATGCCTCACT TCATTCTCCA ATTGTCAAGA GGCAAATTTT CCACTGGAAC
AAGTGGCCAT TAGCAGTAGG TAGTGCACTA AATGTGAAAC TTTCCATATT ATTAGTTTAC TTTTTGATTC TATCATCAGT
CCATTCTTTT TTGCATCTTT TTAAAATATT TACTATATAG AGTCAAGGCC TAACGATTTT TGCATTGTTT TATCATTCCC
TGTATATTGT GTTGAGAATT ACTTTTCTGG TTTTGTCCTT GTCAACAATT TTACATCAGG AGCTGTGCAC TGGGGTATCT
GCTAATTTGA GCCATAACTA GTCTTGAATT ATTAATATCT TATTAGTTCA CCTATGGTAT TTAGAACATT GCTAATTTTT
CATGTTATAG TCGTTACAAA TGTTTGAACT ATGCAAGGAA CGACATGTTT GTTTTCCTTG GCCAATTTTA ATGAGCCCAA
AACTTGTGTC TTTTATGAAA TTTGATGGGA GTTTATTACT TGAGCCAATT TTCAAGTTTG AAGAAGAGGA AAAGGAAAAA
AAATGTTGAG CTGAATTTGA GAATATGCAG AAAAAGAAAC TGACCTACCT TTGGGTAATT TCAATCAGAA GATAACGAAA
AAGAAATTGA ATTTTTTTTT CTGAGGCTTC CCCGCTTCAA AGGTGATTAG GATTATACTG TGACAGAAAT GTTTCTTACA
AGAAATCATG TGGATTATTT TGGATCAATG AGTTGATTAC TTGACTGTAA AGCCATTTAA AGTTCTACTT TTGAACTTGA
TAAGAATGAT GCATTAGTAA TTGATATTGT CCACTTTTAA GGTAATCAGG TTTCTTATCT ACTTTGCACA TCTTGCCTTG
GTTATTGTAG TGCCGCCTTA GGGGAAAGAT AGATTCCAAT GGCTGTGTTG CTGCTTTTTT GGAGGAGCGA TTAAATATGG
GTCTGAATTT TATTCTTTCT GCAGAGGTTA GGCCTTTCTC TGTACTCGTT TTTCCAATGC TATTTTGTTT CATTAACTGC
TCGTTTCAGA TTTTGCATTT TGTCTTGACA TGTTTTCATA TGCATTCATT TCAGCTTGAC CACAGGAAAA AAGACTACAA
ATTTGGGTTT GGTTTGACCG TTGGAGAATA AGTAAGCAGG ACTAGAATTG TGTTTCATTG CTTTAGGCAG CTTAGCAAGC
TTCCTTGCAT CTTTTTCCTT GTTGGAGATT TTTCTTTCCA AAAAAGAAAA GAGGAAATAT CGTTTGTGTC GGGAAACACT
ATTTTCAATC CACAAGTAGC TGCAGAATTT TCAGTAGTC

>Vigan.01G011400.01
GTGTGTAATG GCGTGATTGG GAGGAAGTAA ACTGCTAGGT ATAATGATTG AAAACGGGTC GGGTCGGTTC GGGTGGGTTA
AAGTTTGAGA TGGAAACACA ATGTGGTGTA GTGAGTATAA GCTTGTCCTA CTCGGAAAGT GAATTAGGGT TTTAGCAGTG
GTGGAAGGTT GTTGAGGACT GAGGAGGGTT TTAGAATCAG ATTTGTTCGT TCCTTCTCTC TCTCTCTCAC TCTCTTTCAC
TCTCTCTCTG TGATTCCAAT GGAGACTCCT GTTCCTCCTC CTCCTGCCGC CGCCGCCGAT AAAGTGGTGG ATTACTTCAA
TCTTCCATGT CCAATTCCCT TCGAGGAGCT TCATCGCGAA GCTATGATGT CGTTGAAGCC AGATCTTTTT GAGGGCATGC
GTTTTGATTT CACCAAGATG CTCAATCAGA AGTTCACTCT CAATCACAGC GTCTTGATGG GACCAACTGA GATTCCCTCT
CAGTCGACGG AGACAATTAA GATTCCAACT GCTCACTATG AGTTTGGCTC AACCTTCATT GATCATCCTA GGTTGTTGCT
TTGGGGGAGG ATTTTGACTG ACGGGAGGCT CAATGCTAGA GTCAAGTGTG ATTTGTCTGA AAATCTCACG TTTAAAGCCA
ATGCTCAGCT TACGAATGAA CCACATATGT CTCATGGGAT GTTCAACTTT GATTACAAGG GAAAAGACTA TAGGACACAG
TTTCAACTCG GGAATGGAGC CTTACTTGGA GCAAGTTATA TTCAGAGTGT GACACAGCAC TTATCATTGG GTGGGGAGGT
ATTTTGGGCT GGTCAGCATA GGAAGTCTGG TGTTGGTTAT GCTGCTCGCT ACAACACTGA TAAAATGGTT GCTACAGGGC
AAGTTGCTAG CACTGGAATG GTTCTTCTAA GCTATGTTCA GAAGGTATCT GAGAAGGTTT CTCTAGCATC TGAATTTATG
TGCAACTACT TGTCAAGAGA TGTCACGGCT AGCTTTGGTT ATGACTACAT CCTTAGACAG TGCCGCCTTA GGGGAAAGAT
AGATTCCAAT GGCTGTGTTG CTGCTTTTTT GGAGGAGCGA TTAAATATGG GTCTGAATTT TATTCTTTCT GCAGAGCTTG
ACCACAGGAA AAAAGACTAC AAATTTGGGT TTGGTTTGAC CGTTGGAGAA TAAGTAAGCA GGACTAGAAT TGTGTTTCAT
TGCTTTAGGC AGCTTAGCAA GCTTCCTTGC ATCTTTTTCC TTGTTGGAGA TTTTTCTTTC CAAAAAAGAA AAGAGGAAAT
ATCGTTTGTG TCGGGAAACA CTATTTTCAA TCCACAAGTA GCTGCAGAAT TTTCAGTAGT C

>Vigan.01G011400.01
ATGGAGACTC CTGTTCCTCC TCCTCCTGCC GCCGCCGCCG ATAAAGTGGT GGATTACTTC AATCTTCCAT GTCCAATTCC
CTTCGAGGAG CTTCATCGCG AAGCTATGAT GTCGTTGAAG CCAGATCTTT TTGAGGGCAT GCGTTTTGAT TTCACCAAGA
TGCTCAATCA GAAGTTCACT CTCAATCACA GCGTCTTGAT GGGACCAACT GAGATTCCCT CTCAGTCGAC GGAGACAATT
AAGATTCCAA CTGCTCACTA TGAGTTTGGC TCAACCTTCA TTGATCATCC TAGGTTGTTG CTTTGGGGGA GGATTTTGAC
TGACGGGAGG CTCAATGCTA GAGTCAAGTG TGATTTGTCT GAAAATCTCA CGTTTAAAGC CAATGCTCAG CTTACGAATG
AACCACATAT GTCTCATGGG ATGTTCAACT TTGATTACAA GGGAAAAGAC TATAGGACAC AGTTTCAACT CGGGAATGGA
GCCTTACTTG GAGCAAGTTA TATTCAGAGT GTGACACAGC ACTTATCATT GGGTGGGGAG GTATTTTGGG CTGGTCAGCA
TAGGAAGTCT GGTGTTGGTT ATGCTGCTCG CTACAACACT GATAAAATGG TTGCTACAGG GCAAGTTGCT AGCACTGGAA
TGGTTCTTCT AAGCTATGTT CAGAAGGTAT CTGAGAAGGT TTCTCTAGCA TCTGAATTTA TGTGCAACTA CTTGTCAAGA
GATGTCACGG CTAGCTTTGG TTATGACTAC ATCCTTAGAC AGTGCCGCCT TAGGGGAAAG ATAGATTCCA ATGGCTGTGT
TGCTGCTTTT TTGGAGGAGC GATTAAATAT GGGTCTGAAT TTTATTCTTT CTGCAGAGCT TGACCACAGG AAAAAAGACT
ACAAATTTGG GTTTGGTTTG ACCGTTGGAG AATAA

>Vigan.01G011400.01
METPVPPPPA AAADKVVDYF NLPCPIPFEE LHREAMMSLK PDLFEGMRFD FTKMLNQKFT LNHSVLMGPT EIPSQSTETI
KIPTAHYEFG STFIDHPRLL LWGRILTDGR LNARVKCDLS ENLTFKANAQ LTNEPHMSHG MFNFDYKGKD YRTQFQLGNG
ALLGASYIQS VTQHLSLGGE VFWAGQHRKS GVGYAARYNT DKMVATGQVA STGMVLLSYV QKVSEKVSLA SEFMCNYLSR
DVTASFGYDY ILRQCRLRGK IDSNGCVAAF LEERLNMGLN FILSAELDHR KKDYKFGFGL TVGE*