GBrowse Details

Vigan.01G008300.01

Basic Information:
Name: Vigan.01G008300.01
Multiple alignment
Variant Information
Position: Chr01:508963..511956 (+ strand)
Length: 2994
Functional Information:
Description: Similar to uncharacterized LOC101217184. [XP_004160428.1, Cucumis sativus]
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:12.18,10.83,13.46,110.18,4.20,5.29,3.13,26.65
Arabidopsis thaliana homolog: AT1G18060.1
Automatic updates:
Name: NM_001248475 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100305950 (LOC100305950), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:508963..509033 (+ strand)
Length: 71
Type: five_prime_UTR
Position: Chr01:509034..509285 (+ strand)
Length: 252
Type: CDS
Position: Chr01:509597..509779 (+ strand)
Length: 183
Type: CDS
Position: Chr01:509889..509948 (+ strand)
Length: 60
Type: CDS
Position: Chr01:511379..511666 (+ strand)
Length: 288
Type: CDS
Position: Chr01:511667..511956 (+ strand)
Length: 290
Type: three_prime_UTR

>Vigan.01G008300.01 class=Sequence position=Chr01:508963..511956 (+ strand)
ATATAATAAA CAAAAATGGT TGAGAAGTGA AGTGAGATAT ATTATTATTA TAGCATCACT TGTAATCATA AATGGCATCG
AACTCAATTC ACATGTTGTT CGTTTCTTCC TTCAGTTTGT GTTTCCCAAA TTCATCTCGC TTTCAACTTT CAAAGCTCTC
ACCACAATTT AAACCTCTGA ATTCCATTCC TCTCAGTGGA AGGAAACACT GCAACATTGT TCGATTTCCC AGAGAAAGAA
CAAGGACCAG AGCAACCATT GATGATGTTG AAACAGACCA ACTTTCCTCA ACACCCATTG TTGAGAATGA GAAAGCCAAA
AAGGTACCAT CTTACACTTT GGGGTTCCCC ATCAATGTTT CAAGCTTTGT TTGTTTCGTT TCTTAGATAC TGTTGGAAAG
TCTTCGAATT GAGTTCTCTA ATGTTCAGCT TAAATTTCTA CTCGCATGTT TTGTTCTGTG TTAAAAAATA TTGATTCTGG
GGCTAGAATT GATTTTTGAG TTAAAAAAAC GCCTGTCAGT CTTTCATTTC GAAAATTTGA TATGTTTGGT GGTTTAGATT
ATTTTTTTCA TTTTCATTTT GAATTACTAT TTGGATTCTG TGTTGGTTTT GATTTAATTT CAGTATTTGC TTAGGATGTA
GAGGAAAGTG TGAAAGTGTT AAAAGATGCA GCTAAGACAA GAAAGGTTGC AGCAGAGGAG GTTCTTTCTG CACTGTCTAT
CCTTGAGAAA GCAAAAGTTG ATCCTTCTGG TTTTTTTGAA ACCCTCGGTG GCAATAAATC TCCTGGGAGG ACCTGGATGC
TGATTTTTAC TGCTGAGGTT AACCTACTTT TTTGGTAGCT CTTCATTTGG CTATAATTGT GTTCCTTACT ATGCGTGTTT
ACGGTCATCT GCACTAAACA ATGTCTGCTT TTGTGCTGAA TTTTAGAAAA AATTAAAAGG TGGTCGGTAT TTTCCTCTCA
CAGCAGTTCA GAGGTTTGAT GCCACTGTAA GACTCTTTCC CATGAACCTA TTCGTTCTTT TTGCATACGT GTCCAGTGTT
TGTAGTCAAA GTATCAAGTT TACTTTCATC TGTCTGTTGA TAAGTTTTCA ATTTTTCATG TTATGAAAGG TGTGTTCACT
TTCAATAAAT TTCGACCATC ACTAATGAAC GTGTTAGAAA ATGTTTTGCT AGCTTTACAT TTCTTGTGTG TTATTGAGTT
TTGAACTGAT GTTCTTTCTA GCTGGCAAAA CATGGGAAAC CTTGACACAT GAAACGTTTG ATGGGTACTA ATAAAATGTT
GTTTTAATCT TTAGCCTTTA AGATATTGTT CTGTCGTACA TTAACTGATT CTCTGACCAA CATTCGGTGT TCATTACTTC
CTTCTGAAAT TATTAGTCTG TGCCTGATGT CAAGTTTGTT TCTTTATCTT TATCAGTTTT TGAATGCGTA TATGATGTCA
ATCATCACAC CATTTGGTTT CCCATCCCTT AAAACACACC GAGTCACCTT GGGAGAAGAC ATTTTTTATT TGAATCCCTT
GTGGAGGAGC CAATTTCCAT CCTTTCTCTC AGTTCTGGAT CTAATTCAAT TTTTTTAAAC TTAATTTATT TATAGAAGAG
AGAGAACTGT TAACTTTGCA TTGAATATTG TGATATAGTA GTTACTTTTA TCATCTTAAT CTATGGCTGT GAGGATTTAG
GTTGTCTGGC AAAAGTAGTT GATGAGTAGA AGCTATTAGC TAAAAGTTGA AAACACTTAG TTTATTGAAT TAAAAATGTT
GTGTAAAAGT CAGATATTGA ACTGGCTAAA TAGATATAAA ATGACTTAAG AGTACATGCT CATATGATAC TCTACACATA
TACTTTTCTG CAATACATGG TCTATATTAA TGGAGGTGAT AACTGAAGAA TTTTATTTAT GTTCTGAGGA TAAAATGGAA
AAAAAATGTT ATATAATTAT ATGTTCAAAC ACTACTTCAA GTACCATCTG AAAAAAATGC TAGAAAACAG TGAGATAAGC
CTGGTTATCA AATATCTCTA TTTTGGTCAA ACAATTTCAG TAGCTAGTCA AATATGTCAG CTGAAGTAAT TTGTCTGTCT
TTGAGAAAAG CTGAAATATC TTGTCAAACA GTCTTAGGTG AAAAACTGAA AATCAAATAT TGCTCTGTTT TCTTTAAGCC
ACTTAAATGA AGTCAGGGAA ATTAGACCTC CGCCACTTCA TTCAGAAAGA AGACTATTGT GCATGTATGA GTTAATAAGG
CCTCTCTAAA GTTGTTTTTT GATTGCCTTC TTAGCCCTTT TCATACAGGA AAAGTTGTAT TCCTGTTGTC AGTTTCATTC
TTTGTAAATT TTCTATATGC CAAATCAATG TCTTTGAATA AAAGCTTGGT GCTTCTGTCT AATTTGGAAT ATTAAGTTAT
GCTGATGAAT CATTAGGCAA AGAGGATCGA AAATGGAGTA TATCTTGGAC CCATCGGACA GTTAACATTT GAAGGCAGAC
TTTCATGGAA AAAGAGAATA CTGGCTTTTG TTTTTGAGAA CATACGAGTA AAACTTGGAC CCTTTCAACC TCTACAGATC
AGTCTAGGAA AAAAGGAAGA TAGGGAACCG GACAATAAGG ATCCTTTCTT CATCTGGTTT TATGTTGATG AGGAAATTGC
GGTTGCTCGA GGCCGGAGTG GAGGAACTGC ATTCTGGTGC CGGTGTCGGC GGGTCAATAA CTGATTCTTT CTAACTTTTT
TTGTTTTGAA CTTTCTTTTC AACTTCTGAA TTTGGATGGA GTGATTTATG TATATATGTA AGCATTTAAC TTCAGTTGGA
GGTAAACATA ATTGTTCTTG TATATTATTG TATAATTATA TTGAAGTTCG TGTGTTTCAT GATATTACTG ATGTTGGGGC
ATTTGTGAAG AAATCATTGT TCACCAACTA AAGGAAGAAA AAGGGAATTT GAGAAGTAGG AGAATAGGAG GAAAAGAAGA
TTCACCACCA GGTCTGCTTA CATAATTGAA CAGG

>Vigan.01G008300.01
ATATAATAAA CAAAAATGGT TGAGAAGTGA AGTGAGATAT ATTATTATTA TAGCATCACT TGTAATCATA AATGGCATCG
AACTCAATTC ACATGTTGTT CGTTTCTTCC TTCAGTTTGT GTTTCCCAAA TTCATCTCGC TTTCAACTTT CAAAGCTCTC
ACCACAATTT AAACCTCTGA ATTCCATTCC TCTCAGTGGA AGGAAACACT GCAACATTGT TCGATTTCCC AGAGAAAGAA
CAAGGACCAG AGCAACCATT GATGATGTTG AAACAGACCA ACTTTCCTCA ACACCCATTG TTGAGAATGA GAAAGCCAAA
AAGGATGTAG AGGAAAGTGT GAAAGTGTTA AAAGATGCAG CTAAGACAAG AAAGGTTGCA GCAGAGGAGG TTCTTTCTGC
ACTGTCTATC CTTGAGAAAG CAAAAGTTGA TCCTTCTGGT TTTTTTGAAA CCCTCGGTGG CAATAAATCT CCTGGGAGGA
CCTGGATGCT GATTTTTACT GCTGAGAAAA AATTAAAAGG TGGTCGGTAT TTTCCTCTCA CAGCAGTTCA GAGGTTTGAT
GCCACTGCAA AGAGGATCGA AAATGGAGTA TATCTTGGAC CCATCGGACA GTTAACATTT GAAGGCAGAC TTTCATGGAA
AAAGAGAATA CTGGCTTTTG TTTTTGAGAA CATACGAGTA AAACTTGGAC CCTTTCAACC TCTACAGATC AGTCTAGGAA
AAAAGGAAGA TAGGGAACCG GACAATAAGG ATCCTTTCTT CATCTGGTTT TATGTTGATG AGGAAATTGC GGTTGCTCGA
GGCCGGAGTG GAGGAACTGC ATTCTGGTGC CGGTGTCGGC GGGTCAATAA CTGATTCTTT CTAACTTTTT TTGTTTTGAA
CTTTCTTTTC AACTTCTGAA TTTGGATGGA GTGATTTATG TATATATGTA AGCATTTAAC TTCAGTTGGA GGTAAACATA
ATTGTTCTTG TATATTATTG TATAATTATA TTGAAGTTCG TGTGTTTCAT GATATTACTG ATGTTGGGGC ATTTGTGAAG
AAATCATTGT TCACCAACTA AAGGAAGAAA AAGGGAATTT GAGAAGTAGG AGAATAGGAG GAAAAGAAGA TTCACCACCA
GGTCTGCTTA CATAATTGAA CAGG

>Vigan.01G008300.01
ATGGCATCGA ACTCAATTCA CATGTTGTTC GTTTCTTCCT TCAGTTTGTG TTTCCCAAAT TCATCTCGCT TTCAACTTTC
AAAGCTCTCA CCACAATTTA AACCTCTGAA TTCCATTCCT CTCAGTGGAA GGAAACACTG CAACATTGTT CGATTTCCCA
GAGAAAGAAC AAGGACCAGA GCAACCATTG ATGATGTTGA AACAGACCAA CTTTCCTCAA CACCCATTGT TGAGAATGAG
AAAGCCAAAA AGGATGTAGA GGAAAGTGTG AAAGTGTTAA AAGATGCAGC TAAGACAAGA AAGGTTGCAG CAGAGGAGGT
TCTTTCTGCA CTGTCTATCC TTGAGAAAGC AAAAGTTGAT CCTTCTGGTT TTTTTGAAAC CCTCGGTGGC AATAAATCTC
CTGGGAGGAC CTGGATGCTG ATTTTTACTG CTGAGAAAAA ATTAAAAGGT GGTCGGTATT TTCCTCTCAC AGCAGTTCAG
AGGTTTGATG CCACTGCAAA GAGGATCGAA AATGGAGTAT ATCTTGGACC CATCGGACAG TTAACATTTG AAGGCAGACT
TTCATGGAAA AAGAGAATAC TGGCTTTTGT TTTTGAGAAC ATACGAGTAA AACTTGGACC CTTTCAACCT CTACAGATCA
GTCTAGGAAA AAAGGAAGAT AGGGAACCGG ACAATAAGGA TCCTTTCTTC ATCTGGTTTT ATGTTGATGA GGAAATTGCG
GTTGCTCGAG GCCGGAGTGG AGGAACTGCA TTCTGGTGCC GGTGTCGGCG GGTCAATAAC TGA

>Vigan.01G008300.01
MASNSIHMLF VSSFSLCFPN SSRFQLSKLS PQFKPLNSIP LSGRKHCNIV RFPRERTRTR ATIDDVETDQ LSSTPIVENE
KAKKDVEESV KVLKDAAKTR KVAAEEVLSA LSILEKAKVD PSGFFETLGG NKSPGRTWML IFTAEKKLKG GRYFPLTAVQ
RFDATAKRIE NGVYLGPIGQ LTFEGRLSWK KRILAFVFEN IRVKLGPFQP LQISLGKKED REPDNKDPFF IWFYVDEEIA
VARGRSGGTA FWCRCRRVNN *