GBrowse Details

Vigan.01G004200.01

Basic Information:
Name: Vigan.01G004200.01
Multiple alignment
Variant Information
Position: Chr01:275186..280019 (+ strand)
Length: 4834
Functional Information:
Description: Similar to Uncharacterized protein. [I1KQL1, Glycine max]
GO: Molecular Function: protein binding (GO:0005515)
InterPro: Sel1-like (IPR006597)
Tetratricopeptide-like helical (IPR011990)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:41.80,52.53,16.48,14.04,28.60,69.51,19.81,12.03
Arabidopsis thaliana homolog: AT1G18260.1, AT1G73570.1
Automatic updates:
Name: NM_001249985 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max SEL-1 (LOC732556), mRNA.
PubMed ID: 15978049 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr01:275186..275359 (+ strand)
Length: 174
Type: five_prime_UTR
Position: Chr01:275360..275881 (+ strand)
Length: 522
Type: CDS
Position: Chr01:275994..276485 (+ strand)
Length: 492
Type: CDS
Position: Chr01:276585..276800 (+ strand)
Length: 216
Type: CDS
Position: Chr01:277864..278187 (+ strand)
Length: 324
Type: CDS
Position: Chr01:278304..278546 (+ strand)
Length: 243
Type: CDS
Position: Chr01:279468..279686 (+ strand)
Length: 219
Type: CDS
Position: Chr01:279687..280019 (+ strand)
Length: 333
Type: three_prime_UTR

>Vigan.01G004200.01 class=Sequence position=Chr01:275186..280019 (+ strand)
GAGGAATTCT GACGTGGCAA TTTCTTAGTG GAGAGAGGTA CATCAAGAAA CGTGGCAAGA GAAGTTGAAG ATTATAATTG
CAAGAATACC CCTGCAACTG CGTTTCCTTC CCATTTAGTC CCAAAAACTG TGCGTGATTG CAATCCTCGT CCGTACAGCA
CCGCGGCAAG AAGCATGTCT CGCCCCAAGT GGTTTTTCCT CTCTCTCGCG CTCTCTCTCT CTCTCCTCAC TCTCTCTCGC
TCCGTCGCCG CACGCCAATT CGTGCTCGTG CTATCTCAGG AAGACTTCAA GGACGACCCT GGCGCCGAAC CCGATTCCTC
CGCCGAATGG GACGAGCTCG GCGATGGAGA CGCCCACAAA TCCGAGGAGG ACCTCGACCC TGGTTCATGG CGCCCCATCT
TCGAGCCCCC CTCCGGAGAA CCCCAGCCTC TCTCGGAACC CGATGCTGCC TACTACTCCG CCGTCGACAA GCTCATGTCC
GGTAACCCCG CCCTCATTGA GGACGGCGCC GCAGAGATCG CTGCTGCAGC CGAGACCGGC CATCCCGCCG CGCAATCGGT
TCTAGGGTTT TTGTGGGAAA TGGGGCTTTT GAGAGAGCGA AGCAAGGGGA AGGCGTTTTT ATATCACCAC TTCGCCGCCG
AGGGCGGCAA CATGCAGTCC AAGATGGCTT TGGCTTATAA GTACACGCGT CAAGACGTGA GTGTGGCTTC TCCTCCTTTT
TCCTTTCTTT TCCCCTTTCT GATTCGTGCT TCATTTCTCT TTACGATCTC TGTGAATAGT GTGATAAATT GCATCACTAT
TGGTACAGAT GTTTGACAAA GCTGTTAATC TGTATGCTGA ATTAGCTGAA GTGGCAGTGA ATAATTTTCT GATTTCGAAA
GATTCTCCTG TGATTGAACC GGTTAGGCTC CACAATGGGG CTGAGGAGAA CAAGGAGGCT CTGAGAAAAT CAAAGGGGGA
AGAGGATGAG GACTTTCAGA TACTGGAGTA TCAAGCCCAG AAGGGGAATG CTGTTGCCAT GTACAAAGTT GGCCTCTTTT
ACTACTTTGG CCTTAGGGGA TTGAGGCGTG ATCATTCCAA GGCGCTGTCG TGGTTTTTGA AGGCTGTGGA GAAGGGAGAG
CCCCGATCTA TGGAGCTTCT TGGAGAGATC TATGCTAGGG GAGCAGGTGT TGAGAGAAAC TACACCAAAG CGTTTGAGTG
GCTGACGCTT GCTTCCAGGC ACCAACTGTA TTCTGCTTAT AATGGGATGG GATATTTGTA TGTCAAAGGC TATGGAGTTG
ACCAGAAGAA TTACACTAAA GTAGGAATGT GGTTATATTT CCACCTAGTC ATTATTTGTC TCCCTTTCTG TGCGTATGTC
TAGTTATCAT TGACTTATGA TATCATTTGT AAATCACAGG CAAAGGAGTA TTTTGAAAAG GCTGCAGAGA ATGATGAGGT
TGGGGGGCAC TATAACTTGG GTGTCATGTA TCTCAAGGGA ATTGGAGTTA AGAGGGATGT TAAGCTGGCT TGTAAGTTCT
TTGTGGTGGC TGCTAACAAT GGTCAACCAA AAGCGTTCTA CCAGTTGGCT AAGATTTTCC ACAATGGTGT TGGGTTCAAG
AAGAATATTC ACTTGGTAAG TTGATCAATT CTTTCTTTTG TGAACGTGTT GCTAAATCTG AAGGATAGAT GTATGTGACA
GTCTGATGGT AATATGATTT TCACGTAATT TTAATACAAT GTGATATATT TCAGGATATG TAAGAGATAT ATTTAACTTC
GAGTTGTCTA ATGTCAGTTC AATCATATTT TATTAACTGC GGTTTTCTGC TGATGACCCA ATTATTTGTT CATCTTTTCT
TAAATTGGTT GATCTGTGGG GTTCATCAGT ATGTCAGTCT AAAAATTTGG GCTGACAGTT ATTCTTAAAT GTTACTGAAT
ATTGCTTTAA TGTGTTTTGA TGCTTGCACC AGCAGAATGA AATTGATCAA AAGGCTGATT GAAATTTGGG ACTGATGATT
ATAAAATGAT TCAATTATAA TATACTAAGA TACAATCCTT TATCTACTTA CAATTAGAAG GACAACTACC ACCTTTGAAA
ACGAGGAGTC CTCACTGTTT CATATTTTTT AGTTAATTAG ATGAGGATTA TGGTATGTTG GTTAATCTGA AGTATATAAT
TTTCCAAACT GTAGTATGAA AGCTATAAAA CTAAGAATTG AATGGTCCTA AACAGAGATA ATGAGTGTCT ACTTATCCAA
AAGGGACATC GACTAGTGAT GCTTGAGGAT TTTGTTAATT TTTTCGTGTT TTGTATACCC ACTCTTCTTA TTATTGATAG
CAGTGACATC TGAATGCTTT AGATTTTATG TGTAGTTCTT GCAAGTTCTG TGTTGAGTGG TGCGTATATG GATGCATGAC
TGATAGGGTG CAAGTAGTCT TCATTTTTGT TTGTGTTCTC TAATACATCC CCTGTTTGTA GCTTTTTGTA CAGCAATGGC
TCATACACAC ATATTTTGGG CAATACCATT TGAGATCATA TCTATGATTC ATTTACACGT AGCAGCGATT ATTAGAGAAA
CTTAATCTGA GTACTGGCCT TAAATTAAGT TAATGAAATG CTGTATTTTT AATGACTATT CTGTCATCAA AGTTTCTGCC
AACAAAGTAT GTTCTAACAT TCCTTTCTGG TTTTTTAGGC TACTGCACTG TACAAACTAG TTGCAGAGCG GGGTCCCTGG
AGTTCTTTGT CTAGATGGGC TCTAGAATCA TACTTAAAAG GTGATCTTGG CAAGGCATTT ATGTTGTATT CAAGAATGGC
TGAGATGGGG TATGAGGTGG CACAAAGTAA TGCTGCTTGG ATTCTTGATA AATACGGGGA ACGTAGCATG TGCATGGGTG
AATCTGGATT TTGCACTGAT GCAGAAAGGC ATCAGAGGGC ACATTCTCTG TGGTGGCAAG CTTCTGAGCA GGGTAATGAA
CATGCTGCTT TACTCATTGG AGATGCATAT TACTATGGTC GGGTATGTGG TTTTGGGATG AATTGACTCT GCAATGCTAT
GAATTCAATT TCTGCCATTG TTCTCTCTTG CCCTGCAATT TTTTCACTTT CTTGTGTTTT CCTTCTACCT CATGTCAGGG
TACAGCCAGG GATTATGAGC GAGCTGCTGA AGCTTACATG CATGCCAAAT CACAATCTAA TGCACAAGCC ATGTTCAATC
TTGGATACAT GCATGAGCAT GGACAAGGAC TTCCATTTGA CCTTCATCTA GCCAAGCGGT ACTATGATGA AGCTCTGGAT
CATGATCGTG CCGCAAAGTT GCCAGTAACA CTGGCTCTTT CAAGCTTGTG GGTTCGTAAG AACTATGCTG ATAGTTTCAT
GGTGAGTTTC TTTGGTTTCC CTAATATCCC ATACATTGAA TATATTGATA TATATCTCTA ATTCCTGAAT AATCTTAGTA
AATGACATCG AGCTGTTTAT ATTTCATCAA CAAAGCTTAG TTCTTTGCCT TTTAATGAGT GGGATACAGA GAGAAAATGT
ATGGTTGTTA TAGACTGAAT AGTACGACGG TTTATACTAC AGTGACCCAA TAGGAATCAC TTGTAACAAA CTAACGAAGT
CAATTACAGC TAACTCATAA CATCTATCTA TAGTTGCTGT TAGAGTTTTA TTTGATACAA AGGAGTTATG CACTCAAATT
CGGCAACTGG CTTATTTGGT GTATAATCTC TTAATATTGC GTAAAGACAC TGCATCACTA AGTTCACCGC CTTTTTCTTT
GTCATCACCC CGTATCATGA CTGGAATTCA AGTTTGAATT GGAATCCAAC GTTGCATAGA AATGGACAAG TTTAAAATAT
AAGAAAAAAA GATACATATG CTTATTATCT TGTGTATGTA TGCTCGTGAC CCATTAGTGA ATATCAAAGT AATCAGACGA
GTATAATGGA GTTGGTGGTC GATCATGGAA TGCTAATGTA CTCTTGCAAC CTGCCTGGCC TTGAATCAAG TCTGGGTGTT
GGAGAGATTA TAATGTGAAT GGACTCACAT TTAAAAGAGT TGGAGTCATA CGGTACATAG AGATAAGCAA GTTAAACAAT
ATATAAGAAA GATTAACAAA GTTATCACTG TAAGGTTTTG GGTTGAGTGT GTTTTCATGT TCTCTTATGT AATAAATAAA
CATCTACCTG ATGCTTTCAG ATTTCCAAAC AGTCTACCAT TTGTGGCCTC AATATGTAAC TTTTCCAACA ATATTTCAGG
TTTCTCACTG TTGGATTGCA TGTGCTTTTT GTTTTTTATC AGGTCCACGT GATTGATTCA TTGCCAGAAC TGTATCCTAA
ATTAGAAGCT TGGGTGGAGA ATGTGCTCAT GGAGGAGGGA AATGCTACCA TTTTGACCCT CTTTGCATGC CTCATAACTG
TGTTATATCT CCGCGAGAGG CAACGAAGGC AAGCTGGTGT TGCAGCTGGA GAGGTGGCTC AACCAAATCT CCCCAACGAG
CTTGGTGTAC CTGCACGCTA GTTCGGCTTG CCCTTCCCTA TTACATACAA TCTGTCTTCA GTTATAGGCC AAACCGTACC
ATAGGGAAAC CTATAAGTGC ATTGTAGATA TTCATTTGTA AGTTAGGGGA ACGGCTTTCA CACTTTTTCA CATAGCCCAA
TATGAGAGCT CAAGAAAGAT CCTCACTAAG TAAGATTTTG TATCTTTTGT GATCGACTTT ACAGAGTAAT TTCACTAACC
GGCACAGAAC CTCTTGAAGT TCTTTTAGAT TTTATATACT CCTAAAGTAC TTCTCATTGA CACTGATTTC AACATTAAAT
AAATGGGTCC TTGTTTATGG TATCACAATT AATT

>Vigan.01G004200.01
GAGGAATTCT GACGTGGCAA TTTCTTAGTG GAGAGAGGTA CATCAAGAAA CGTGGCAAGA GAAGTTGAAG ATTATAATTG
CAAGAATACC CCTGCAACTG CGTTTCCTTC CCATTTAGTC CCAAAAACTG TGCGTGATTG CAATCCTCGT CCGTACAGCA
CCGCGGCAAG AAGCATGTCT CGCCCCAAGT GGTTTTTCCT CTCTCTCGCG CTCTCTCTCT CTCTCCTCAC TCTCTCTCGC
TCCGTCGCCG CACGCCAATT CGTGCTCGTG CTATCTCAGG AAGACTTCAA GGACGACCCT GGCGCCGAAC CCGATTCCTC
CGCCGAATGG GACGAGCTCG GCGATGGAGA CGCCCACAAA TCCGAGGAGG ACCTCGACCC TGGTTCATGG CGCCCCATCT
TCGAGCCCCC CTCCGGAGAA CCCCAGCCTC TCTCGGAACC CGATGCTGCC TACTACTCCG CCGTCGACAA GCTCATGTCC
GGTAACCCCG CCCTCATTGA GGACGGCGCC GCAGAGATCG CTGCTGCAGC CGAGACCGGC CATCCCGCCG CGCAATCGGT
TCTAGGGTTT TTGTGGGAAA TGGGGCTTTT GAGAGAGCGA AGCAAGGGGA AGGCGTTTTT ATATCACCAC TTCGCCGCCG
AGGGCGGCAA CATGCAGTCC AAGATGGCTT TGGCTTATAA GTACACGCGT CAAGACATGT TTGACAAAGC TGTTAATCTG
TATGCTGAAT TAGCTGAAGT GGCAGTGAAT AATTTTCTGA TTTCGAAAGA TTCTCCTGTG ATTGAACCGG TTAGGCTCCA
CAATGGGGCT GAGGAGAACA AGGAGGCTCT GAGAAAATCA AAGGGGGAAG AGGATGAGGA CTTTCAGATA CTGGAGTATC
AAGCCCAGAA GGGGAATGCT GTTGCCATGT ACAAAGTTGG CCTCTTTTAC TACTTTGGCC TTAGGGGATT GAGGCGTGAT
CATTCCAAGG CGCTGTCGTG GTTTTTGAAG GCTGTGGAGA AGGGAGAGCC CCGATCTATG GAGCTTCTTG GAGAGATCTA
TGCTAGGGGA GCAGGTGTTG AGAGAAACTA CACCAAAGCG TTTGAGTGGC TGACGCTTGC TTCCAGGCAC CAACTGTATT
CTGCTTATAA TGGGATGGGA TATTTGTATG TCAAAGGCTA TGGAGTTGAC CAGAAGAATT ACACTAAAGC AAAGGAGTAT
TTTGAAAAGG CTGCAGAGAA TGATGAGGTT GGGGGGCACT ATAACTTGGG TGTCATGTAT CTCAAGGGAA TTGGAGTTAA
GAGGGATGTT AAGCTGGCTT GTAAGTTCTT TGTGGTGGCT GCTAACAATG GTCAACCAAA AGCGTTCTAC CAGTTGGCTA
AGATTTTCCA CAATGGTGTT GGGTTCAAGA AGAATATTCA CTTGGCTACT GCACTGTACA AACTAGTTGC AGAGCGGGGT
CCCTGGAGTT CTTTGTCTAG ATGGGCTCTA GAATCATACT TAAAAGGTGA TCTTGGCAAG GCATTTATGT TGTATTCAAG
AATGGCTGAG ATGGGGTATG AGGTGGCACA AAGTAATGCT GCTTGGATTC TTGATAAATA CGGGGAACGT AGCATGTGCA
TGGGTGAATC TGGATTTTGC ACTGATGCAG AAAGGCATCA GAGGGCACAT TCTCTGTGGT GGCAAGCTTC TGAGCAGGGT
AATGAACATG CTGCTTTACT CATTGGAGAT GCATATTACT ATGGTCGGGG TACAGCCAGG GATTATGAGC GAGCTGCTGA
AGCTTACATG CATGCCAAAT CACAATCTAA TGCACAAGCC ATGTTCAATC TTGGATACAT GCATGAGCAT GGACAAGGAC
TTCCATTTGA CCTTCATCTA GCCAAGCGGT ACTATGATGA AGCTCTGGAT CATGATCGTG CCGCAAAGTT GCCAGTAACA
CTGGCTCTTT CAAGCTTGTG GGTTCGTAAG AACTATGCTG ATAGTTTCAT GGTCCACGTG ATTGATTCAT TGCCAGAACT
GTATCCTAAA TTAGAAGCTT GGGTGGAGAA TGTGCTCATG GAGGAGGGAA ATGCTACCAT TTTGACCCTC TTTGCATGCC
TCATAACTGT GTTATATCTC CGCGAGAGGC AACGAAGGCA AGCTGGTGTT GCAGCTGGAG AGGTGGCTCA ACCAAATCTC
CCCAACGAGC TTGGTGTACC TGCACGCTAG TTCGGCTTGC CCTTCCCTAT TACATACAAT CTGTCTTCAG TTATAGGCCA
AACCGTACCA TAGGGAAACC TATAAGTGCA TTGTAGATAT TCATTTGTAA GTTAGGGGAA CGGCTTTCAC ACTTTTTCAC
ATAGCCCAAT ATGAGAGCTC AAGAAAGATC CTCACTAAGT AAGATTTTGT ATCTTTTGTG ATCGACTTTA CAGAGTAATT
TCACTAACCG GCACAGAACC TCTTGAAGTT CTTTTAGATT TTATATACTC CTAAAGTACT TCTCATTGAC ACTGATTTCA
ACATTAAATA AATGGGTCCT TGTTTATGGT ATCACAATTA ATT

>Vigan.01G004200.01
ATGTCTCGCC CCAAGTGGTT TTTCCTCTCT CTCGCGCTCT CTCTCTCTCT CCTCACTCTC TCTCGCTCCG TCGCCGCACG
CCAATTCGTG CTCGTGCTAT CTCAGGAAGA CTTCAAGGAC GACCCTGGCG CCGAACCCGA TTCCTCCGCC GAATGGGACG
AGCTCGGCGA TGGAGACGCC CACAAATCCG AGGAGGACCT CGACCCTGGT TCATGGCGCC CCATCTTCGA GCCCCCCTCC
GGAGAACCCC AGCCTCTCTC GGAACCCGAT GCTGCCTACT ACTCCGCCGT CGACAAGCTC ATGTCCGGTA ACCCCGCCCT
CATTGAGGAC GGCGCCGCAG AGATCGCTGC TGCAGCCGAG ACCGGCCATC CCGCCGCGCA ATCGGTTCTA GGGTTTTTGT
GGGAAATGGG GCTTTTGAGA GAGCGAAGCA AGGGGAAGGC GTTTTTATAT CACCACTTCG CCGCCGAGGG CGGCAACATG
CAGTCCAAGA TGGCTTTGGC TTATAAGTAC ACGCGTCAAG ACATGTTTGA CAAAGCTGTT AATCTGTATG CTGAATTAGC
TGAAGTGGCA GTGAATAATT TTCTGATTTC GAAAGATTCT CCTGTGATTG AACCGGTTAG GCTCCACAAT GGGGCTGAGG
AGAACAAGGA GGCTCTGAGA AAATCAAAGG GGGAAGAGGA TGAGGACTTT CAGATACTGG AGTATCAAGC CCAGAAGGGG
AATGCTGTTG CCATGTACAA AGTTGGCCTC TTTTACTACT TTGGCCTTAG GGGATTGAGG CGTGATCATT CCAAGGCGCT
GTCGTGGTTT TTGAAGGCTG TGGAGAAGGG AGAGCCCCGA TCTATGGAGC TTCTTGGAGA GATCTATGCT AGGGGAGCAG
GTGTTGAGAG AAACTACACC AAAGCGTTTG AGTGGCTGAC GCTTGCTTCC AGGCACCAAC TGTATTCTGC TTATAATGGG
ATGGGATATT TGTATGTCAA AGGCTATGGA GTTGACCAGA AGAATTACAC TAAAGCAAAG GAGTATTTTG AAAAGGCTGC
AGAGAATGAT GAGGTTGGGG GGCACTATAA CTTGGGTGTC ATGTATCTCA AGGGAATTGG AGTTAAGAGG GATGTTAAGC
TGGCTTGTAA GTTCTTTGTG GTGGCTGCTA ACAATGGTCA ACCAAAAGCG TTCTACCAGT TGGCTAAGAT TTTCCACAAT
GGTGTTGGGT TCAAGAAGAA TATTCACTTG GCTACTGCAC TGTACAAACT AGTTGCAGAG CGGGGTCCCT GGAGTTCTTT
GTCTAGATGG GCTCTAGAAT CATACTTAAA AGGTGATCTT GGCAAGGCAT TTATGTTGTA TTCAAGAATG GCTGAGATGG
GGTATGAGGT GGCACAAAGT AATGCTGCTT GGATTCTTGA TAAATACGGG GAACGTAGCA TGTGCATGGG TGAATCTGGA
TTTTGCACTG ATGCAGAAAG GCATCAGAGG GCACATTCTC TGTGGTGGCA AGCTTCTGAG CAGGGTAATG AACATGCTGC
TTTACTCATT GGAGATGCAT ATTACTATGG TCGGGGTACA GCCAGGGATT ATGAGCGAGC TGCTGAAGCT TACATGCATG
CCAAATCACA ATCTAATGCA CAAGCCATGT TCAATCTTGG ATACATGCAT GAGCATGGAC AAGGACTTCC ATTTGACCTT
CATCTAGCCA AGCGGTACTA TGATGAAGCT CTGGATCATG ATCGTGCCGC AAAGTTGCCA GTAACACTGG CTCTTTCAAG
CTTGTGGGTT CGTAAGAACT ATGCTGATAG TTTCATGGTC CACGTGATTG ATTCATTGCC AGAACTGTAT CCTAAATTAG
AAGCTTGGGT GGAGAATGTG CTCATGGAGG AGGGAAATGC TACCATTTTG ACCCTCTTTG CATGCCTCAT AACTGTGTTA
TATCTCCGCG AGAGGCAACG AAGGCAAGCT GGTGTTGCAG CTGGAGAGGT GGCTCAACCA AATCTCCCCA ACGAGCTTGG
TGTACCTGCA CGCTAG

>Vigan.01G004200.01
MSRPKWFFLS LALSLSLLTL SRSVAARQFV LVLSQEDFKD DPGAEPDSSA EWDELGDGDA HKSEEDLDPG SWRPIFEPPS
GEPQPLSEPD AAYYSAVDKL MSGNPALIED GAAEIAAAAE TGHPAAQSVL GFLWEMGLLR ERSKGKAFLY HHFAAEGGNM
QSKMALAYKY TRQDMFDKAV NLYAELAEVA VNNFLISKDS PVIEPVRLHN GAEENKEALR KSKGEEDEDF QILEYQAQKG
NAVAMYKVGL FYYFGLRGLR RDHSKALSWF LKAVEKGEPR SMELLGEIYA RGAGVERNYT KAFEWLTLAS RHQLYSAYNG
MGYLYVKGYG VDQKNYTKAK EYFEKAAEND EVGGHYNLGV MYLKGIGVKR DVKLACKFFV VAANNGQPKA FYQLAKIFHN
GVGFKKNIHL ATALYKLVAE RGPWSSLSRW ALESYLKGDL GKAFMLYSRM AEMGYEVAQS NAAWILDKYG ERSMCMGESG
FCTDAERHQR AHSLWWQASE QGNEHAALLI GDAYYYGRGT ARDYERAAEA YMHAKSQSNA QAMFNLGYMH EHGQGLPFDL
HLAKRYYDEA LDHDRAAKLP VTLALSSLWV RKNYADSFMV HVIDSLPELY PKLEAWVENV LMEEGNATIL TLFACLITVL
YLRERQRRQA GVAAGEVAQP NLPNELGVPA R*