Variant information

Chr11:6118185 - 6129890

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 [SNPs] [Indels] [SSR-associated indels]

SNPs

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
6118599GA411750.771.00SYNONYMOUS_CODING(SILENT|agG/agA|R45|None|Vigan.11G053900.01)Vigna nepalensis
6118620CG341475.771.00NON_SYNONYMOUS_CODING(MISSENSE|atC/atG|I52M|None|Vigan.11G053900.01)Vigna nepalensis
6118678CA291104.771.00NON_SYNONYMOUS_CODING(MISSENSE|Cta/Ata|L72I|None|Vigan.11G053900.01)Vigna nepalensis
6119110CT501912.771.00INTRON(|||None|Vigan.11G053900.01)Vigna nepalensis
6119268GT251039.771.00INTRON(|||None|Vigan.11G053900.01)Vigna nepalensis
6119423AC431529.771.00INTRON(|||None|Vigan.11G053900.01)Vigna nepalensis
6120041AC522081.771.00INTRON(|||None|Vigan.11G053900.01)Vigna nepalensis
6120431TC632493.771.00INTRON(|||None|Vigan.11G053900.01), SPLICE_SITE_REGION(|||None|Vigan.11G053900.01)Vigna nepalensis
6120590TC652661.771.00SYNONYMOUS_CODING(SILENT|ctT/ctC|L132|None|Vigan.11G053900.01)Vigna nepalensis
6120968CG702748.771.00INTRON(|||None|Vigan.11G053900.01)Vigna nepalensis
6121530AC682818.771.00INTRON(|||None|Vigan.11G053900.01)Vigna nepalensis
6121949AG562286.771.00INTRON(|||None|Vigan.11G053900.01)Vigna nepalensis
6122213AG451981.771.00INTRON(|||None|Vigan.11G053900.01)Vigna nepalensis
6122222TG492146.771.00INTRON(|||None|Vigan.11G053900.01)Vigna nepalensis
6122289TC612476.771.00INTRON(|||None|Vigan.11G053900.01)Vigna nepalensis
6122302AG582399.771.00INTRON(|||None|Vigan.11G053900.01)Vigna nepalensis
6122714CA501904.771.00NON_SYNONYMOUS_CODING(MISSENSE|gCa/gAa|A388E|None|Vigan.11G053900.01)Vigna nepalensis
6124185AT562252.771.00INTRON(|||None|Vigan.11G053900.01)Vigna nepalensis
6124563TA542242.771.00INTRON(|||None|Vigan.11G053900.01)Vigna nepalensis
6124643GA652704.771.00INTRON(|||None|Vigan.11G053900.01)Vigna nepalensis
6124762GC642657.771.00INTRON(|||None|Vigan.11G053900.01)Vigna nepalensis
6125168AG662771.771.00DOWNSTREAM(|4863||None|Vigan.11G054000.01), INTRON(|||None|Vigan.11G053900.01)Vigna nepalensis
6125775GC562224.771.00DOWNSTREAM(|4256||None|Vigan.11G054000.01), INTRON(|||None|Vigan.11G053900.01)Vigna nepalensis
6126374TG471980.771.00DOWNSTREAM(|3657||None|Vigan.11G054000.01), INTRON(|||None|Vigan.11G053900.01)Vigna nepalensis
6126533CT482056.771.00DOWNSTREAM(|3498||None|Vigan.11G054000.01), INTRON(|||None|Vigan.11G053900.01)Vigna nepalensis
6126566TG582409.771.00DOWNSTREAM(|3465||None|Vigan.11G054000.01), INTRON(|||None|Vigan.11G053900.01)Vigna nepalensis
6126615CT672712.771.00DOWNSTREAM(|3416||None|Vigan.11G054000.01), INTRON(|||None|Vigan.11G053900.01)Vigna nepalensis
6126706CT582320.771.00DOWNSTREAM(|3325||None|Vigan.11G054000.01), INTRON(|||None|Vigan.11G053900.01)Vigna nepalensis
6127323TA602425.771.00DOWNSTREAM(|2708||None|Vigan.11G054000.01), INTRON(|||None|Vigan.11G053900.01)Vigna nepalensis
6127422AC491979.771.00DOWNSTREAM(|2609||None|Vigan.11G054000.01), INTRON(|||None|Vigan.11G053900.01)Vigna nepalensis
6127890AT441758.771.00DOWNSTREAM(|2141||None|Vigan.11G054000.01), INTRON(|||None|Vigan.11G053900.01)Vigna nepalensis
6128130CT491923.771.00DOWNSTREAM(|1901||None|Vigan.11G054000.01), INTRON(|||None|Vigan.11G053900.01)Vigna nepalensis
6128458AT522003.771.00DOWNSTREAM(|1573||None|Vigan.11G054000.01), INTRON(|||None|Vigan.11G053900.01)Vigna nepalensis
6129795GC602171.771.00DOWNSTREAM(|236||None|Vigan.11G054000.01), UTR_3_PRIME(|144||None|Vigan.11G053900.01)Vigna nepalensis

Indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
6125294CCT682179.731.00DOWNSTREAM(|4736||None|Vigan.11G054000.01), INTRON(|||None|Vigan.11G053900.01)Vigna nepalensis
6126418GTTTGTTTCATG542383.731.00DOWNSTREAM(|3612||None|Vigan.11G054000.01), INTRON(|||None|Vigan.11G053900.01)Vigna nepalensis
6127369TTC521816.731.00DOWNSTREAM(|2661||None|Vigan.11G054000.01), INTRON(|||None|Vigan.11G053900.01)Vigna nepalensis

SSR-associated indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
6118751(TC)16(TC)1518418.730.89INTRON(|||None|Vigan.11G053900.01)Vigna nepalensis
6119329(AT)19(AT)2618969.731.00INTRON(|||None|Vigan.11G053900.01)Vigna nepalensis