VIGGS:Variant information

Chr11:4506755 - 4510005

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[SNPs] [Indels]

SNPs

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
4506796	T	C	57	2196.77	1.00	UPSTREAM(\|3902\|\|None\|Vigan.11G040800.01), UTR_5_PRIME(\|113\|\|None\|Vigan.11G040700.01)	Vigna nepalensis
4507313	T	C	68	2643.77	1.00	INTRON(\|\|\|None\|Vigan.11G040700.01), UPSTREAM(\|3385\|\|None\|Vigan.11G040800.01)	Vigna nepalensis
4507330	T	C	75	2731.77	1.00	INTRON(\|\|\|None\|Vigan.11G040700.01), UPSTREAM(\|3368\|\|None\|Vigan.11G040800.01)	Vigna nepalensis
4507356	G	T	78	3415.77	1.00	INTRON(\|\|\|None\|Vigan.11G040700.01), UPSTREAM(\|3342\|\|None\|Vigan.11G040800.01)	Vigna nepalensis
4507381	T	C	83	3751.77	1.00	INTRON(\|\|\|None\|Vigan.11G040700.01), UPSTREAM(\|3317\|\|None\|Vigan.11G040800.01)	Vigna nepalensis
4507394	C	T	84	3717.77	1.00	INTRON(\|\|\|None\|Vigan.11G040700.01), UPSTREAM(\|3304\|\|None\|Vigan.11G040800.01)	Vigna nepalensis
4507624	T	A	64	2585.77	1.00	INTRON(\|\|\|None\|Vigan.11G040700.01), UPSTREAM(\|3074\|\|None\|Vigan.11G040800.01)	Vigna nepalensis
4507697	T	A	48	1931.77	1.00	INTRON(\|\|\|None\|Vigan.11G040700.01), UPSTREAM(\|3001\|\|None\|Vigan.11G040800.01)	Vigna nepalensis
4507741	A	G	56	2272.77	1.00	INTRON(\|\|\|None\|Vigan.11G040700.01), UPSTREAM(\|2957\|\|None\|Vigan.11G040800.01)	Vigna nepalensis
4508424	T	C	55	2420.77	1.00	INTRON(\|\|\|None\|Vigan.11G040700.01), UPSTREAM(\|2274\|\|None\|Vigan.11G040800.01)	Vigna nepalensis
4508427	G	A	52	2422.77	1.00	INTRON(\|\|\|None\|Vigan.11G040700.01), UPSTREAM(\|2271\|\|None\|Vigan.11G040800.01)	Vigna nepalensis
4508451	A	G	46	2052.77	1.00	INTRON(\|\|\|None\|Vigan.11G040700.01), UPSTREAM(\|2247\|\|None\|Vigan.11G040800.01)	Vigna nepalensis
4508629	T	G	58	2321.77	1.00	INTRON(\|\|\|None\|Vigan.11G040700.01), UPSTREAM(\|2069\|\|None\|Vigan.11G040800.01)	Vigna nepalensis
4508682	A	G	54	2222.77	1.00	INTRON(\|\|\|None\|Vigan.11G040700.01), UPSTREAM(\|2016\|\|None\|Vigan.11G040800.01)	Vigna nepalensis
4508766	A	C	52	2102.77	1.00	INTRON(\|\|\|None\|Vigan.11G040700.01), UPSTREAM(\|1932\|\|None\|Vigan.11G040800.01)	Vigna nepalensis
4508861	T	C	54	2185.77	1.00	INTRON(\|\|\|None\|Vigan.11G040700.01), UPSTREAM(\|1837\|\|None\|Vigan.11G040800.01)	Vigna nepalensis
4508876	T	C	52	2076.77	1.00	INTRON(\|\|\|None\|Vigan.11G040700.01), UPSTREAM(\|1822\|\|None\|Vigan.11G040800.01)	Vigna nepalensis
4509288	G	A	57	2345.77	1.00	NON_SYNONYMOUS_CODING(MISSENSE\|Ggc/Agc\|G236S\|None\|Vigan.11G040700.01), UPSTREAM(\|1410\|\|None\|Vigan.11G040800.01)	Vigna nepalensis

Indels

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
4507360	TGA	T	72	3332.73	1.00	INTRON(\|\|\|None\|Vigan.11G040700.01), UPSTREAM(\|3337\|\|None\|Vigan.11G040800.01)	Vigna nepalensis
4507385	A	AATACT	82	4030.73	1.00	INTRON(\|\|\|None\|Vigan.11G040700.01), UPSTREAM(\|3312\|\|None\|Vigan.11G040800.01)	Vigna nepalensis
4507386	G	GTTAA	82	4070.73	1.00	INTRON(\|\|\|None\|Vigan.11G040700.01), UPSTREAM(\|3311\|\|None\|Vigan.11G040800.01)	Vigna nepalensis
4507999	CT	C	54	1461.73	1.00	INTRON(\|\|\|None\|Vigan.11G040700.01), UPSTREAM(\|2698\|\|None\|Vigan.11G040800.01)	Vigna nepalensis