VIGGS:Variant information

Chr11:32848679 - 32858078

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SNPs

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
32848687	C	T	44	1719.77	1.00	DOWNSTREAM(\|2547\|\|None\|Vigan.11G203300.01), UTR_5_PRIME(\|183\|\|None\|Vigan.11G203400.01)	Vigna nepalensis
32848765	T	G	74	2825.77	1.00	DOWNSTREAM(\|2625\|\|None\|Vigan.11G203300.01), UTR_5_PRIME(\|105\|\|None\|Vigan.11G203400.01)	Vigna nepalensis
32849283	A	T	50	2015.77	1.00	DOWNSTREAM(\|3143\|\|None\|Vigan.11G203300.01), INTRON(\|\|\|None\|Vigan.11G203400.01)	Vigna nepalensis
32849359	C	G	47	1897.77	1.00	DOWNSTREAM(\|3219\|\|None\|Vigan.11G203300.01), INTRON(\|\|\|None\|Vigan.11G203400.01)	Vigna nepalensis
32849634	G	A	39	1612.77	1.00	DOWNSTREAM(\|3494\|\|None\|Vigan.11G203300.01), INTRON(\|\|\|None\|Vigan.11G203400.01)	Vigna nepalensis
32850286	A	G	43	1723.77	1.00	DOWNSTREAM(\|4146\|\|None\|Vigan.11G203300.01), INTRON(\|\|\|None\|Vigan.11G203400.01)	Vigna nepalensis
32850324	A	G	65	2467.77	1.00	DOWNSTREAM(\|4184\|\|None\|Vigan.11G203300.01), INTRON(\|\|\|None\|Vigan.11G203400.01)	Vigna nepalensis
32850382	C	T	77	3158.77	1.00	DOWNSTREAM(\|4242\|\|None\|Vigan.11G203300.01), INTRON(\|\|\|None\|Vigan.11G203400.01)	Vigna nepalensis
32850638	C	G	67	2679.77	1.00	DOWNSTREAM(\|4498\|\|None\|Vigan.11G203300.01), INTRON(\|\|\|None\|Vigan.11G203400.01)	Vigna nepalensis
32850685	G	A	47	1844.77	1.00	DOWNSTREAM(\|4545\|\|None\|Vigan.11G203300.01), INTRON(\|\|\|None\|Vigan.11G203400.01)	Vigna nepalensis
32850926	G	A	16	687.77	1.00	DOWNSTREAM(\|4786\|\|None\|Vigan.11G203300.01), INTRON(\|\|\|None\|Vigan.11G203400.01)	Vigna nepalensis
32850951	C	A	14	601.77	1.00	DOWNSTREAM(\|4811\|\|None\|Vigan.11G203300.01), INTRON(\|\|\|None\|Vigan.11G203400.01)	Vigna nepalensis
32850953	C	A	14	601.77	1.00	DOWNSTREAM(\|4813\|\|None\|Vigan.11G203300.01), INTRON(\|\|\|None\|Vigan.11G203400.01)	Vigna nepalensis
32850955	C	A	14	799.77	1.00	DOWNSTREAM(\|4815\|\|None\|Vigan.11G203300.01), INTRON(\|\|\|None\|Vigan.11G203400.01)	Vigna nepalensis
32851011	G	T	24	934.77	1.00	DOWNSTREAM(\|4871\|\|None\|Vigan.11G203300.01), INTRON(\|\|\|None\|Vigan.11G203400.01)	Vigna nepalensis
32851121	A	T	27	1095.77	1.00	DOWNSTREAM(\|4981\|\|None\|Vigan.11G203300.01), INTRON(\|\|\|None\|Vigan.11G203400.01)	Vigna nepalensis
32851660	C	G	66	2501.77	0.97	INTRON(\|\|\|None\|Vigan.11G203400.01)	Vigna nepalensis
32852048	G	T	91	371.77	0.19	INTRON(\|\|\|None\|Vigan.11G203400.01)	Vigna nepalensis
32852126	G	A	76	268.77	0.21	INTRON(\|\|\|None\|Vigan.11G203400.01)	Vigna nepalensis
32852158	T	G	66	2664.77	1.00	INTRON(\|\|\|None\|Vigan.11G203400.01)	Vigna nepalensis
32852446	T	C	42	1667.77	1.00	INTRON(\|\|\|None\|Vigan.11G203400.01)	Vigna nepalensis
32852635	T	C	58	2201.77	1.00	INTRON(\|\|\|None\|Vigan.11G203400.01)	Vigna nepalensis
32852758	G	A	46	1787.77	1.00	INTRON(\|\|\|None\|Vigan.11G203400.01)	Vigna nepalensis
32852776	C	A	42	1617.77	1.00	INTRON(\|\|\|None\|Vigan.11G203400.01)	Vigna nepalensis
32852859	T	A	62	2485.77	1.00	INTRON(\|\|\|None\|Vigan.11G203400.01)	Vigna nepalensis
32852872	C	T	62	2450.77	1.00	INTRON(\|\|\|None\|Vigan.11G203400.01)	Vigna nepalensis
32852973	G	A	72	2813.77	1.00	INTRON(\|\|\|None\|Vigan.11G203400.01)	Vigna nepalensis
32853010	A	G	72	3258.77	1.00	INTRON(\|\|\|None\|Vigan.11G203400.01)	Vigna nepalensis
32853013	T	C	72	3258.77	1.00	INTRON(\|\|\|None\|Vigan.11G203400.01)	Vigna nepalensis
32853193	G	A	68	2673.77	1.00	INTRON(\|\|\|None\|Vigan.11G203400.01)	Vigna nepalensis
32853238	T	A	61	2479.77	1.00	INTRON(\|\|\|None\|Vigan.11G203400.01)	Vigna nepalensis
32853325	C	T	59	1595.77	0.97	INTRON(\|\|\|None\|Vigan.11G203400.01)	Vigna nepalensis
32853375	G	A	55	2204.77	1.00	INTRON(\|\|\|None\|Vigan.11G203400.01)	Vigna nepalensis
32853441	G	A	53	2075.77	1.00	INTRON(\|\|\|None\|Vigan.11G203400.01)	Vigna nepalensis
32853516	G	A	51	2033.77	1.00	INTRON(\|\|\|None\|Vigan.11G203400.01)	Vigna nepalensis
32853635	T	C	61	2484.77	1.00	INTRON(\|\|\|None\|Vigan.11G203400.01)	Vigna nepalensis
32853766	G	T	48	2155.77	1.00	INTRON(\|\|\|None\|Vigan.11G203400.01)	Vigna nepalensis
32853775	T	C	48	2136.77	1.00	INTRON(\|\|\|None\|Vigan.11G203400.01)	Vigna nepalensis
32853838	A	G	48	1991.77	1.00	INTRON(\|\|\|None\|Vigan.11G203400.01)	Vigna nepalensis
32853921	G	A	32	1279.77	1.00	INTRON(\|\|\|None\|Vigan.11G203400.01)	Vigna nepalensis
32854008	G	A	33	1241.77	1.00	INTRON(\|\|\|None\|Vigan.11G203400.01)	Vigna nepalensis
32854053	A	C	26	994.77	1.00	INTRON(\|\|\|None\|Vigan.11G203400.01)	Vigna nepalensis
32854785	A	G	13	477.77	1.00	INTRON(\|\|\|None\|Vigan.11G203400.01)	Vigna nepalensis
32854803	C	T	19	687.77	1.00	INTRON(\|\|\|None\|Vigan.11G203400.01)	Vigna nepalensis
32854867	T	C	52	1785.77	1.00	INTRON(\|\|\|None\|Vigan.11G203400.01)	Vigna nepalensis
32854890	G	A	56	1933.77	1.00	INTRON(\|\|\|None\|Vigan.11G203400.01)	Vigna nepalensis
32854902	G	A	65	2859.77	1.00	INTRON(\|\|\|None\|Vigan.11G203400.01)	Vigna nepalensis
32854909	G	A	67	2916.77	1.00	INTRON(\|\|\|None\|Vigan.11G203400.01)	Vigna nepalensis
32854923	T	C	80	2922.77	1.00	INTRON(\|\|\|None\|Vigan.11G203400.01)	Vigna nepalensis
32855166	T	C	47	2084.77	1.00	INTRON(\|\|\|None\|Vigan.11G203400.01)	Vigna nepalensis
32855175	C	T	49	2180.77	1.00	INTRON(\|\|\|None\|Vigan.11G203400.01)	Vigna nepalensis
32855205	G	T	58	2296.77	1.00	INTRON(\|\|\|None\|Vigan.11G203400.01)	Vigna nepalensis
32855228	T	C	58	2288.77	1.00	INTRON(\|\|\|None\|Vigan.11G203400.01)	Vigna nepalensis
32855253	G	A	66	2571.77	1.00	INTRON(\|\|\|None\|Vigan.11G203400.01)	Vigna nepalensis
32855350	G	A	62	2426.77	1.00	INTRON(\|\|\|None\|Vigan.11G203400.01)	Vigna nepalensis
32855408	A	T	59	2586.77	1.00	INTRON(\|\|\|None\|Vigan.11G203400.01)	Vigna nepalensis
32855425	C	T	64	2896.77	1.00	INTRON(\|\|\|None\|Vigan.11G203400.01)	Vigna nepalensis
32855461	A	G	64	2698.77	0.98	INTRON(\|\|\|None\|Vigan.11G203400.01)	Vigna nepalensis
32855676	T	C	65	2667.77	1.00	INTRON(\|\|\|None\|Vigan.11G203400.01)	Vigna nepalensis
32855727	G	T	65	2599.77	1.00	INTRON(\|\|\|None\|Vigan.11G203400.01)	Vigna nepalensis
32855826	G	C	66	2974.77	1.00	INTRON(\|\|\|None\|Vigan.11G203400.01)	Vigna nepalensis
32855828	G	C	66	2974.77	1.00	INTRON(\|\|\|None\|Vigan.11G203400.01)	Vigna nepalensis
32855877	G	A	60	2711.77	1.00	INTRON(\|\|\|None\|Vigan.11G203400.01)	Vigna nepalensis
32855893	C	G	58	2606.77	1.00	INTRON(\|\|\|None\|Vigan.11G203400.01)	Vigna nepalensis
32856273	G	A	59	2291.77	1.00	SYNONYMOUS_CODING(SILENT\|ctG/ctA\|L132\|None\|Vigan.11G203400.01)	Vigna nepalensis
32856341	T	A	58	2326.77	1.00	INTRON(\|\|\|None\|Vigan.11G203400.01)	Vigna nepalensis
32856503	T	C	53	2151.77	1.00	INTRON(\|\|\|None\|Vigan.11G203400.01)	Vigna nepalensis
32856641	G	A	47	1869.77	1.00	INTRON(\|\|\|None\|Vigan.11G203400.01)	Vigna nepalensis
32856819	T	A	47	2173.77	1.00	INTRON(\|\|\|None\|Vigan.11G203400.01)	Vigna nepalensis
32856821	A	G	49	2173.77	1.00	INTRON(\|\|\|None\|Vigan.11G203400.01)	Vigna nepalensis
32856973	T	G	48	1904.77	1.00	INTRON(\|\|\|None\|Vigan.11G203400.01)	Vigna nepalensis
32857092	C	T	56	2264.77	1.00	INTRON(\|\|\|None\|Vigan.11G203400.01)	Vigna nepalensis
32857271	T	C	64	2593.77	1.00	INTRON(\|\|\|None\|Vigan.11G203400.01)	Vigna nepalensis
32857422	C	A	61	2390.77	1.00	INTRON(\|\|\|None\|Vigan.11G203400.01)	Vigna nepalensis
32857522	C	T	55	2243.77	1.00	INTRON(\|\|\|None\|Vigan.11G203400.01)	Vigna nepalensis
32857697	T	C	49	1974.77	1.00	UTR_3_PRIME(\|18\|\|None\|Vigan.11G203400.01)	Vigna nepalensis
32857710	G	T	50	1983.77	1.00	UTR_3_PRIME(\|31\|\|None\|Vigan.11G203400.01)	Vigna nepalensis
32857756	A	C	51	1960.77	1.00	UTR_3_PRIME(\|77\|\|None\|Vigan.11G203400.01)	Vigna nepalensis
32857791	A	G	51	1988.77	1.00	UTR_3_PRIME(\|112\|\|None\|Vigan.11G203400.01)	Vigna nepalensis
32857840	C	T	47	2059.77	1.00	UTR_3_PRIME(\|161\|\|None\|Vigan.11G203400.01)	Vigna nepalensis
32857847	T	C	47	2059.77	1.00	UTR_3_PRIME(\|168\|\|None\|Vigan.11G203400.01)	Vigna nepalensis
32857863	T	G	42	1879.77	1.00	UTR_3_PRIME(\|184\|\|None\|Vigan.11G203400.01)	Vigna nepalensis
32857870	G	C	42	1862.77	1.00	UTR_3_PRIME(\|191\|\|None\|Vigan.11G203400.01)	Vigna nepalensis

Indels

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
32849475	TA	T	53	1947.73	1.00	DOWNSTREAM(\|3336\|\|None\|Vigan.11G203300.01), INTRON(\|\|\|None\|Vigan.11G203400.01)	Vigna nepalensis
32850223	G	GA	43	1685.73	1.00	DOWNSTREAM(\|4084\|\|None\|Vigan.11G203300.01), INTRON(\|\|\|None\|Vigan.11G203400.01)	Vigna nepalensis
32850956	T	TATATATATATACATATATATATATATATAC	14	790.73	1.00	DOWNSTREAM(\|4817\|\|None\|Vigan.11G203300.01), INTRON(\|\|\|None\|Vigan.11G203400.01)	Vigna nepalensis
32851796	C	CT	47	1211.73	0.91	INTRON(\|\|\|None\|Vigan.11G203400.01)	Vigna nepalensis
32854187	C	CAAAATCCG	12	501.73	1.00	INTRON(\|\|\|None\|Vigan.11G203400.01)	Vigna nepalensis
32854204	T	TCAACTTAGGGC	7	277.77	1.00	INTRON(\|\|\|None\|Vigan.11G203400.01)	Vigna nepalensis
32854208	C	CTGTCACT	5	232.8	1.00	INTRON(\|\|\|None\|Vigan.11G203400.01)	Vigna nepalensis
32854816	CA	C	26	789.73	1.00	INTRON(\|\|\|None\|Vigan.11G203400.01)	Vigna nepalensis
32855443	C	CAATTTTCA	57	2932.73	1.00	INTRON(\|\|\|None\|Vigan.11G203400.01)	Vigna nepalensis
32855875	A	ATC	58	2662.73	1.00	INTRON(\|\|\|None\|Vigan.11G203400.01)	Vigna nepalensis
32857557	CTGTATA	C	56	2450.73	1.00	INTRON(\|\|\|None\|Vigan.11G203400.01)	Vigna nepalensis