VIGGS:Variant information

Chr11:16209504 - 16217819

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SNPs

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
16209508	A	C	51	2247.77	1.00	UPSTREAM(\|4944\|\|None\|Vigan.11G114500.01), UTR_5_PRIME(\|69\|\|None\|Vigan.11G114600.01)	Vigna nepalensis
16209514	G	A	51	2250.77	1.00	UPSTREAM(\|4950\|\|None\|Vigan.11G114500.01), UTR_5_PRIME(\|63\|\|None\|Vigan.11G114600.01)	Vigna nepalensis
16209719	G	T	51	2034.77	1.00	INTRON(\|\|\|None\|Vigan.11G114600.01)	Vigna nepalensis
16209732	T	C	48	1945.77	1.00	INTRON(\|\|\|None\|Vigan.11G114600.01)	Vigna nepalensis
16210061	T	C	44	1812.77	1.00	INTRON(\|\|\|None\|Vigan.11G114600.01)	Vigna nepalensis
16211290	C	T	58	2280.77	1.00	INTRON(\|\|\|None\|Vigan.11G114600.01), UPSTREAM(\|4269\|\|None\|Vigan.11G114700.01)	Vigna nepalensis
16212390	T	C	44	1835.77	1.00	INTRON(\|\|\|None\|Vigan.11G114600.01), UPSTREAM(\|3169\|\|None\|Vigan.11G114700.01)	Vigna nepalensis
16212441	A	G	32	1328.77	1.00	INTRON(\|\|\|None\|Vigan.11G114600.01), UPSTREAM(\|3118\|\|None\|Vigan.11G114700.01)	Vigna nepalensis
16212461	A	G	33	1410.77	1.00	INTRON(\|\|\|None\|Vigan.11G114600.01), UPSTREAM(\|3098\|\|None\|Vigan.11G114700.01)	Vigna nepalensis
16212577	G	A	43	106.77	0.14	INTRON(\|\|\|None\|Vigan.11G114600.01), UPSTREAM(\|2982\|\|None\|Vigan.11G114700.01)	Vigna nepalensis
16212578	G	A	44	106.77	0.14	INTRON(\|\|\|None\|Vigan.11G114600.01), UPSTREAM(\|2981\|\|None\|Vigan.11G114700.01)	Vigna nepalensis
16212676	G	A	46	263.77	0.22	INTRON(\|\|\|None\|Vigan.11G114600.01), UPSTREAM(\|2883\|\|None\|Vigan.11G114700.01)	Vigna nepalensis
16212689	G	A	45	295.77	0.22	INTRON(\|\|\|None\|Vigan.11G114600.01), UPSTREAM(\|2870\|\|None\|Vigan.11G114700.01)	Vigna nepalensis
16212714	G	A	55	1425.77	0.78	INTRON(\|\|\|None\|Vigan.11G114600.01), UPSTREAM(\|2845\|\|None\|Vigan.11G114700.01)	Vigna nepalensis
16212771	G	A	74	421.77	0.24	INTRON(\|\|\|None\|Vigan.11G114600.01), UPSTREAM(\|2788\|\|None\|Vigan.11G114700.01)	Vigna nepalensis
16212850	A	G	51	187.77	0.20	INTRON(\|\|\|None\|Vigan.11G114600.01), UPSTREAM(\|2709\|\|None\|Vigan.11G114700.01)	Vigna nepalensis
16213362	T	C	50	1913.77	1.00	INTRON(\|\|\|None\|Vigan.11G114600.01), UPSTREAM(\|2197\|\|None\|Vigan.11G114700.01)	Vigna nepalensis
16214335	T	C	42	1621.77	1.00	INTRON(\|\|\|None\|Vigan.11G114600.01), UPSTREAM(\|1224\|\|None\|Vigan.11G114700.01)	Vigna nepalensis
16217381	T	A	62	2844.77	1.00	DOWNSTREAM(\|999\|\|None\|Vigan.11G114700.01), INTRON(\|\|\|None\|Vigan.11G114600.01)	Vigna nepalensis
16217382	T	A	62	2902.77	1.00	DOWNSTREAM(\|1000\|\|None\|Vigan.11G114700.01), INTRON(\|\|\|None\|Vigan.11G114600.01)	Vigna nepalensis
16217389	T	G	65	2840.77	1.00	DOWNSTREAM(\|1007\|\|None\|Vigan.11G114700.01), INTRON(\|\|\|None\|Vigan.11G114600.01)	Vigna nepalensis
16217582	C	A	68	2798.77	1.00	DOWNSTREAM(\|1200\|\|None\|Vigan.11G114700.01), UTR_3_PRIME(\|90\|\|None\|Vigan.11G114600.01)	Vigna nepalensis

Indels

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
16209905	A	AT	48	1271.73	0.98	INTRON(\|\|\|None\|Vigan.11G114600.01)	Vigna nepalensis
16212981	TATATGAGC	T	59	1720.73	0.73	INTRON(\|\|\|None\|Vigan.11G114600.01), UPSTREAM(\|2577\|\|None\|Vigan.11G114700.01)	Vigna nepalensis
16214517	T	TG	12	494.73	1.00	INTRON(\|\|\|None\|Vigan.11G114600.01), UPSTREAM(\|1041\|\|None\|Vigan.11G114700.01)	Vigna nepalensis
16214518	A	ATGCTATATTATATTTGTTGGTTCAGAGG	11	494.73	1.00	INTRON(\|\|\|None\|Vigan.11G114600.01), UPSTREAM(\|1040\|\|None\|Vigan.11G114700.01)	Vigna nepalensis