VIGGS:Variant information

Chr11:12454894 - 12463943

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SNPs

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
12455218	T	A	50	1945.77	1.00	INTRON(\|\|\|None\|Vigan.11G096400.01), UPSTREAM(\|4383\|\|None\|Vigan.11G096300.01)	Vigna nepalensis
12455452	G	A	11	424.77	1.00	INTRON(\|\|\|None\|Vigan.11G096400.01), UPSTREAM(\|4617\|\|None\|Vigan.11G096300.01)	Vigna nepalensis
12455591	T	G	35	1387.77	1.00	INTRON(\|\|\|None\|Vigan.11G096400.01), UPSTREAM(\|4756\|\|None\|Vigan.11G096300.01)	Vigna nepalensis
12455662	T	A	56	2215.77	1.00	INTRON(\|\|\|None\|Vigan.11G096400.01), UPSTREAM(\|4827\|\|None\|Vigan.11G096300.01)	Vigna nepalensis
12455926	A	G	52	2176.77	1.00	INTRON(\|\|\|None\|Vigan.11G096400.01)	Vigna nepalensis
12455994	A	G	41	1637.77	1.00	NON_SYNONYMOUS_CODING(MISSENSE\|Atg/Gtg\|M64V\|None\|Vigan.11G096400.01)	Vigna nepalensis
12456019	C	G	44	1723.77	1.00	NON_SYNONYMOUS_CODING(MISSENSE\|gCc/gGc\|A72G\|None\|Vigan.11G096400.01)	Vigna nepalensis
12456053	C	G	43	1614.77	1.00	SYNONYMOUS_CODING(SILENT\|acC/acG\|T83\|None\|Vigan.11G096400.01)	Vigna nepalensis
12456488	T	C	51	2047.77	1.00	INTRON(\|\|\|None\|Vigan.11G096400.01)	Vigna nepalensis
12456716	A	G	42	1652.77	1.00	INTRON(\|\|\|None\|Vigan.11G096400.01)	Vigna nepalensis
12456948	T	G	54	2188.77	1.00	INTRON(\|\|\|None\|Vigan.11G096400.01)	Vigna nepalensis
12457111	A	T	55	2229.77	1.00	INTRON(\|\|\|None\|Vigan.11G096400.01)	Vigna nepalensis
12457691	T	C	50	2043.77	1.00	INTRON(\|\|\|None\|Vigan.11G096400.01)	Vigna nepalensis
12457850	T	C	69	2670.77	1.00	INTRON(\|\|\|None\|Vigan.11G096400.01)	Vigna nepalensis
12459147	C	T	51	1974.77	1.00	INTRON(\|\|\|None\|Vigan.11G096400.01)	Vigna nepalensis
12459186	C	A	53	2050.77	1.00	INTRON(\|\|\|None\|Vigan.11G096400.01)	Vigna nepalensis
12459464	A	G	63	2520.77	1.00	INTRON(\|\|\|None\|Vigan.11G096400.01)	Vigna nepalensis
12459504	C	A	61	2374.77	0.97	INTRON(\|\|\|None\|Vigan.11G096400.01)	Vigna nepalensis
12459547	A	G	65	132.77	0.12	INTRON(\|\|\|None\|Vigan.11G096400.01)	Vigna nepalensis
12459554	C	A	62	132.77	0.13	INTRON(\|\|\|None\|Vigan.11G096400.01)	Vigna nepalensis
12459555	T	A	64	132.77	0.12	INTRON(\|\|\|None\|Vigan.11G096400.01)	Vigna nepalensis
12459572	T	C	62	171.77	0.15	INTRON(\|\|\|None\|Vigan.11G096400.01)	Vigna nepalensis
12459579	A	G	64	273.77	0.17	INTRON(\|\|\|None\|Vigan.11G096400.01)	Vigna nepalensis
12459581	G	A	63	270.77	0.17	INTRON(\|\|\|None\|Vigan.11G096400.01)	Vigna nepalensis
12459585	C	A	62	309.77	0.18	INTRON(\|\|\|None\|Vigan.11G096400.01)	Vigna nepalensis
12459595	A	G	67	264.77	0.16	INTRON(\|\|\|None\|Vigan.11G096400.01)	Vigna nepalensis
12459601	G	A	65	219.77	0.15	INTRON(\|\|\|None\|Vigan.11G096400.01)	Vigna nepalensis
12459606	G	A	61	234.77	0.16	INTRON(\|\|\|None\|Vigan.11G096400.01)	Vigna nepalensis
12459706	C	T	66	2285.77	0.95	INTRON(\|\|\|None\|Vigan.11G096400.01)	Vigna nepalensis
12459832	C	T	64	222.77	0.16	INTRON(\|\|\|None\|Vigan.11G096400.01)	Vigna nepalensis
12459833	C	G	65	219.77	0.15	INTRON(\|\|\|None\|Vigan.11G096400.01)	Vigna nepalensis
12459834	C	T	65	258.77	0.15	INTRON(\|\|\|None\|Vigan.11G096400.01)	Vigna nepalensis
12459839	C	T	65	258.77	0.17	INTRON(\|\|\|None\|Vigan.11G096400.01)	Vigna nepalensis
12459858	A	T	67	306.77	0.18	INTRON(\|\|\|None\|Vigan.11G096400.01)	Vigna nepalensis
12459859	A	G	66	303.77	0.18	INTRON(\|\|\|None\|Vigan.11G096400.01)	Vigna nepalensis
12459863	T	C	67	328.77	0.19	INTRON(\|\|\|None\|Vigan.11G096400.01)	Vigna nepalensis
12459890	C	T	61	408.77	0.23	INTRON(\|\|\|None\|Vigan.11G096400.01)	Vigna nepalensis
12459892	T	C	61	405.77	0.23	INTRON(\|\|\|None\|Vigan.11G096400.01)	Vigna nepalensis
12459898	A	G	63	408.77	0.22	INTRON(\|\|\|None\|Vigan.11G096400.01)	Vigna nepalensis
12459908	A	G	60	276.77	0.15	INTRON(\|\|\|None\|Vigan.11G096400.01)	Vigna nepalensis
12459909	T	C	60	231.77	0.15	INTRON(\|\|\|None\|Vigan.11G096400.01)	Vigna nepalensis
12459915	C	T	58	192.77	0.14	INTRON(\|\|\|None\|Vigan.11G096400.01)	Vigna nepalensis
12460021	C	T	49	1892.77	1.00	INTRON(\|\|\|None\|Vigan.11G096400.01)	Vigna nepalensis
12460988	A	G	43	1939.77	1.00	INTRON(\|\|\|None\|Vigan.11G096400.01)	Vigna nepalensis
12461077	T	G	53	2146.77	1.00	INTRON(\|\|\|None\|Vigan.11G096400.01)	Vigna nepalensis
12461489	G	A	71	2825.77	1.00	INTRON(\|\|\|None\|Vigan.11G096400.01)	Vigna nepalensis
12461583	C	T	49	1986.77	1.00	INTRON(\|\|\|None\|Vigan.11G096400.01)	Vigna nepalensis
12461719	T	G	53	2158.77	1.00	INTRON(\|\|\|None\|Vigan.11G096400.01)	Vigna nepalensis
12462006	T	C	60	2452.77	1.00	INTRON(\|\|\|None\|Vigan.11G096400.01)	Vigna nepalensis
12462482	C	T	52	2194.77	1.00	INTRON(\|\|\|None\|Vigan.11G096400.01)	Vigna nepalensis
12462657	C	T	65	2672.77	1.00	INTRON(\|\|\|None\|Vigan.11G096400.01)	Vigna nepalensis
12463104	A	G	44	1799.77	1.00	INTRON(\|\|\|None\|Vigan.11G096400.01)	Vigna nepalensis
12463164	C	T	64	2504.77	1.00	INTRON(\|\|\|None\|Vigan.11G096400.01)	Vigna nepalensis
12463220	C	G	57	2115.77	1.00	INTRON(\|\|\|None\|Vigan.11G096400.01)	Vigna nepalensis
12463550	C	T	56	2214.77	1.00	INTRON(\|\|\|None\|Vigan.11G096400.01), UPSTREAM(\|4911\|\|None\|Vigan.11G096500.01)	Vigna nepalensis
12463819	T	C	54	2169.77	1.00	UPSTREAM(\|4642\|\|None\|Vigan.11G096500.01), UTR_3_PRIME(\|101\|\|None\|Vigan.11G096400.01)	Vigna nepalensis

Indels

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
12455836	TAGTGCATATAAGTG	T	41	1798.73	1.00	INTRON(\|\|\|None\|Vigan.11G096400.01)	Vigna nepalensis
12456797	AGT	A	49	2071.73	1.00	INTRON(\|\|\|None\|Vigan.11G096400.01)	Vigna nepalensis
12457450	T	TA	64	2548.73	1.00	INTRON(\|\|\|None\|Vigan.11G096400.01)	Vigna nepalensis
12458620	T	TAGGGG	56	2638.73	1.00	INTRON(\|\|\|None\|Vigan.11G096400.01)	Vigna nepalensis
12459613	T	TG	62	210.73	0.13	INTRON(\|\|\|None\|Vigan.11G096400.01)	Vigna nepalensis
12459882	TAAG	T	59	1809.73	0.76	INTRON(\|\|\|None\|Vigan.11G096400.01)	Vigna nepalensis
12460121	TGTTTGTTTAGCCTAACTTGAATAAGTTAGTTATACCCAATACTA	T	52	2302.73	1.00	INTRON(\|\|\|None\|Vigan.11G096400.01)	Vigna nepalensis
12460562	A	ATT	41	1539.73	1.00	INTRON(\|\|\|None\|Vigan.11G096400.01)	Vigna nepalensis
12460986	G	GT	44	1930.73	1.00	INTRON(\|\|\|None\|Vigan.11G096400.01)	Vigna nepalensis
12461949	A	ATT	61	2719.73	1.00	INTRON(\|\|\|None\|Vigan.11G096400.01)	Vigna nepalensis