VIGGS:Variant information

Chr10:27224931 - 27229743

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[SNPs] [Indels] [SSR-associated indels]

SNPs

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
27225184	C	G	90	1579.77	0.53	NON_SYNONYMOUS_CODING(MISSENSE\|gCa/gGa\|A2G\|None\|Vigan.10G226600.01)	Vigna nepalensis
27225216	A	G	51	366.77	0.27	NON_SYNONYMOUS_CODING(MISSENSE\|Acc/Gcc\|T13A\|None\|Vigan.10G226600.01)	Vigna nepalensis
27225656	G	C	59	2243.77	1.00	INTRON(\|\|\|None\|Vigan.10G226600.01)	Vigna nepalensis
27225868	G	A	40	1595.77	1.00	INTRON(\|\|\|None\|Vigan.10G226600.01)	Vigna nepalensis
27226108	C	T	35	1422.77	1.00	INTRON(\|\|\|None\|Vigan.10G226600.01)	Vigna nepalensis
27226430	T	C	62	2545.77	1.00	INTRON(\|\|\|None\|Vigan.10G226600.01)	Vigna nepalensis
27226477	C	T	66	2634.77	1.00	INTRON(\|\|\|None\|Vigan.10G226600.01)	Vigna nepalensis
27226911	A	G	55	2268.77	1.00	INTRON(\|\|\|None\|Vigan.10G226600.01), UPSTREAM(\|4663\|\|None\|Vigan.10G226700.01)	Vigna nepalensis
27227041	A	G	52	2033.77	1.00	INTRON(\|\|\|None\|Vigan.10G226600.01), UPSTREAM(\|4533\|\|None\|Vigan.10G226700.01)	Vigna nepalensis
27227138	G	A	43	1600.77	1.00	INTRON(\|\|\|None\|Vigan.10G226600.01), UPSTREAM(\|4436\|\|None\|Vigan.10G226700.01)	Vigna nepalensis
27228264	C	T	59	2387.77	1.00	INTRON(\|\|\|None\|Vigan.10G226600.01), SPLICE_SITE_REGION(\|\|\|None\|Vigan.10G226600.01), UPSTREAM(\|3310\|\|None\|Vigan.10G226700.01)	Vigna nepalensis
27228706	A	C	51	2097.77	1.00	INTRON(\|\|\|None\|Vigan.10G226600.01), UPSTREAM(\|2868\|\|None\|Vigan.10G226700.01)	Vigna nepalensis
27228784	G	A	68	3067.77	1.00	INTRON(\|\|\|None\|Vigan.10G226600.01), UPSTREAM(\|2790\|\|None\|Vigan.10G226700.01)	Vigna nepalensis
27228787	G	T	68	3067.77	1.00	INTRON(\|\|\|None\|Vigan.10G226600.01), UPSTREAM(\|2787\|\|None\|Vigan.10G226700.01)	Vigna nepalensis
27229191	A	C	57	2308.77	1.00	INTRON(\|\|\|None\|Vigan.10G226600.01), UPSTREAM(\|2383\|\|None\|Vigan.10G226700.01)	Vigna nepalensis
27229243	T	C	56	2191.77	1.00	INTRON(\|\|\|None\|Vigan.10G226600.01), UPSTREAM(\|2331\|\|None\|Vigan.10G226700.01)	Vigna nepalensis
27229351	C	T	52	2103.77	1.00	INTRON(\|\|\|None\|Vigan.10G226600.01), UPSTREAM(\|2223\|\|None\|Vigan.10G226700.01)	Vigna nepalensis

Indels

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
27226104	C	CT	31	1360.73	1.00	INTRON(\|\|\|None\|Vigan.10G226600.01)	Vigna nepalensis
27227590	TC	T	66	2427.73	1.00	INTRON(\|\|\|None\|Vigan.10G226600.01), UPSTREAM(\|3983\|\|None\|Vigan.10G226700.01)	Vigna nepalensis
27228788	T	TG	68	3022.73	1.00	INTRON(\|\|\|None\|Vigan.10G226600.01), UPSTREAM(\|2785\|\|None\|Vigan.10G226700.01)	Vigna nepalensis

SSR-associated indels

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
27226146	(TAA)6	(TAA)5	39	1708.73	1.00	INTRON(\|\|\|None\|Vigan.10G226600.01)	Vigna nepalensis