VIGGS:Variant information

Chr09:9351977 - 9355028

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SNPs

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
9352231	C	T	60	2228.77	1.00	SYNONYMOUS_CODING(SILENT\|agC/agT\|S5\|None\|Vigan.09G068800.01)	Vigna nepalensis
9352259	T	G	60	2179.77	1.00	NON_SYNONYMOUS_CODING(MISSENSE\|Tct/Gct\|S15A\|None\|Vigan.09G068800.01)	Vigna nepalensis
9352439	C	G	62	2581.77	1.00	INTRON(\|\|\|None\|Vigan.09G068800.01)	Vigna nepalensis
9352535	A	T	59	2625.77	1.00	INTRON(\|\|\|None\|Vigan.09G068800.01)	Vigna nepalensis
9352537	T	A	60	2625.77	1.00	INTRON(\|\|\|None\|Vigan.09G068800.01)	Vigna nepalensis
9352566	T	C	65	2963.77	1.00	INTRON(\|\|\|None\|Vigan.09G068800.01)	Vigna nepalensis
9352570	G	A	65	2980.77	1.00	INTRON(\|\|\|None\|Vigan.09G068800.01)	Vigna nepalensis
9352611	T	C	66	2515.77	1.00	INTRON(\|\|\|None\|Vigan.09G068800.01)	Vigna nepalensis
9352775	C	T	62	2437.77	1.00	INTRON(\|\|\|None\|Vigan.09G068800.01)	Vigna nepalensis
9352819	G	A	54	2125.77	1.00	INTRON(\|\|\|None\|Vigan.09G068800.01)	Vigna nepalensis
9352901	G	T	58	2316.77	1.00	INTRON(\|\|\|None\|Vigan.09G068800.01)	Vigna nepalensis
9353063	T	A	66	2638.77	1.00	INTRON(\|\|\|None\|Vigan.09G068800.01)	Vigna nepalensis
9353123	A	G	58	2307.77	1.00	INTRON(\|\|\|None\|Vigan.09G068800.01)	Vigna nepalensis
9353266	G	A	58	2336.77	1.00	INTRON(\|\|\|None\|Vigan.09G068800.01)	Vigna nepalensis
9353360	T	C	49	1987.77	1.00	INTRON(\|\|\|None\|Vigan.09G068800.01)	Vigna nepalensis
9353421	T	C	51	2103.77	1.00	INTRON(\|\|\|None\|Vigan.09G068800.01)	Vigna nepalensis
9353524	G	A	50	1975.77	1.00	INTRON(\|\|\|None\|Vigan.09G068800.01)	Vigna nepalensis
9353686	T	G	52	2107.77	1.00	INTRON(\|\|\|None\|Vigan.09G068800.01)	Vigna nepalensis
9353786	A	T	54	2198.77	1.00	INTRON(\|\|\|None\|Vigan.09G068800.01)	Vigna nepalensis
9353893	C	A	59	2699.77	1.00	INTRON(\|\|\|None\|Vigan.09G068800.01)	Vigna nepalensis
9353967	G	T	66	2835.77	1.00	INTRON(\|\|\|None\|Vigan.09G068800.01)	Vigna nepalensis
9354033	A	T	70	3158.77	1.00	INTRON(\|\|\|None\|Vigan.09G068800.01)	Vigna nepalensis
9354054	G	C	72	3297.77	1.00	INTRON(\|\|\|None\|Vigan.09G068800.01)	Vigna nepalensis
9354068	G	A	69	3040.77	1.00	INTRON(\|\|\|None\|Vigan.09G068800.01)	Vigna nepalensis
9354222	A	C	43	1675.77	1.00	INTRON(\|\|\|None\|Vigan.09G068800.01)	Vigna nepalensis
9354361	T	C	46	1752.77	1.00	INTRON(\|\|\|None\|Vigan.09G068800.01)	Vigna nepalensis
9354458	A	C	50	2014.77	1.00	INTRON(\|\|\|None\|Vigan.09G068800.01), SPLICE_SITE_REGION(\|\|\|None\|Vigan.09G068800.01)	Vigna nepalensis
9354980	T	C	64	2473.77	1.00	UPSTREAM(\|4977\|\|None\|Vigan.09G068900.01), UTR_3_PRIME(\|171\|\|None\|Vigan.09G068800.01)	Vigna nepalensis

Indels

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
9352037	A	AC	48	1700.73	1.00	UTR_5_PRIME(\|179\|\|None\|Vigan.09G068800.01)	Vigna nepalensis
9352491	ATT	A	47	2121.73	1.00	INTRON(\|\|\|None\|Vigan.09G068800.01)	Vigna nepalensis
9352505	AATTATTCGTTTCTAAGCTGT	A	54	2432.73	1.00	INTRON(\|\|\|None\|Vigan.09G068800.01)	Vigna nepalensis
9352579	C	CTT	70	3241.73	1.00	INTRON(\|\|\|None\|Vigan.09G068800.01)	Vigna nepalensis
9353911	CT	C	57	2597.73	1.00	INTRON(\|\|\|None\|Vigan.09G068800.01)	Vigna nepalensis
9353913	ACT	A	56	2556.73	1.00	INTRON(\|\|\|None\|Vigan.09G068800.01)	Vigna nepalensis
9354811	CAT	C	53	2340.73	1.00	UTR_3_PRIME(\|3\|\|None\|Vigan.09G068800.01)	Vigna nepalensis