Variant information

Chr09:7427961 - 7446016

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 [SNPs] [Indels]

SNPs

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
7428196GA592301.771.00NON_SYNONYMOUS_CODING(MISSENSE|Gca/Aca|A6T|None|Vigan.09G054800.01), UPSTREAM(|3692||None|Vigan.09G054700.01)Vigna nepalensis
7428231CT491818.771.00SYNONYMOUS_CODING(SILENT|caC/caT|H17|None|Vigan.09G054800.01), UPSTREAM(|3727||None|Vigan.09G054700.01)Vigna nepalensis
7428352CA381340.771.00NON_SYNONYMOUS_CODING(MISSENSE|Ctt/Att|L58I|None|Vigan.09G054800.01), UPSTREAM(|3848||None|Vigan.09G054700.01)Vigna nepalensis
7428461AT24978.771.00INTRON(|||None|Vigan.09G054800.01), UPSTREAM(|3957||None|Vigan.09G054700.01)Vigna nepalensis
7428544CT491163.770.80INTRON(|||None|Vigan.09G054800.01), UPSTREAM(|4040||None|Vigan.09G054700.01)Vigna nepalensis
7428573AC431116.770.84INTRON(|||None|Vigan.09G054800.01), UPSTREAM(|4069||None|Vigan.09G054700.01)Vigna nepalensis
7428664TA81246.770.17INTRON(|||None|Vigan.09G054800.01), UPSTREAM(|4160||None|Vigan.09G054700.01)Vigna nepalensis
7428702TC842125.770.77INTRON(|||None|Vigan.09G054800.01), UPSTREAM(|4198||None|Vigan.09G054700.01)Vigna nepalensis
7428785TC461531.771.00INTRON(|||None|Vigan.09G054800.01), UPSTREAM(|4281||None|Vigan.09G054700.01)Vigna nepalensis
7430130AC462026.771.00INTRON(|||None|Vigan.09G054800.01)Vigna nepalensis
7430138GT462041.771.00INTRON(|||None|Vigan.09G054800.01)Vigna nepalensis
7430148CG431845.771.00INTRON(|||None|Vigan.09G054800.01)Vigna nepalensis
7430290TC18730.771.00INTRON(|||None|Vigan.09G054800.01)Vigna nepalensis
7430366GC12511.771.00INTRON(|||None|Vigan.09G054800.01)Vigna nepalensis
7430369GC12511.771.00INTRON(|||None|Vigan.09G054800.01)Vigna nepalensis
7430861TC431560.771.00DOWNSTREAM(|4535||None|Vigan.09G054900.01), INTRON(|||None|Vigan.09G054800.01)Vigna nepalensis
7430899TC431597.771.00DOWNSTREAM(|4497||None|Vigan.09G054900.01), SYNONYMOUS_CODING(SILENT|atT/atC|I172|None|Vigan.09G054800.01)Vigna nepalensis
7430925CT522348.771.00DOWNSTREAM(|4471||None|Vigan.09G054900.01), NON_SYNONYMOUS_CODING(MISSENSE|cCg/cTg|P181L|None|Vigan.09G054800.01)Vigna nepalensis
7430933TG492299.771.00DOWNSTREAM(|4463||None|Vigan.09G054900.01), NON_SYNONYMOUS_CODING(MISSENSE|Ttg/Gtg|L184V|None|Vigan.09G054800.01)Vigna nepalensis
7431237AC30959.771.00DOWNSTREAM(|4159||None|Vigan.09G054900.01), NON_SYNONYMOUS_CODING(MISSENSE|aAc/aCc|N246T|None|Vigan.09G054800.01)Vigna nepalensis
7431555AG6191.841.00DOWNSTREAM(|3841||None|Vigan.09G054900.01), INTRON(|||None|Vigan.09G054800.01)Vigna nepalensis
7431563GA979.770.33DOWNSTREAM(|3833||None|Vigan.09G054900.01), INTRON(|||None|Vigan.09G054800.01)Vigna nepalensis
7431564GA979.770.33DOWNSTREAM(|3832||None|Vigan.09G054900.01), INTRON(|||None|Vigan.09G054800.01)Vigna nepalensis
7431636AT38892.770.71DOWNSTREAM(|3760||None|Vigan.09G054900.01), INTRON(|||None|Vigan.09G054800.01)Vigna nepalensis
7431681GT32763.770.72DOWNSTREAM(|3715||None|Vigan.09G054900.01), INTRON(|||None|Vigan.09G054800.01)Vigna nepalensis
7431729CT291247.771.00DOWNSTREAM(|3667||None|Vigan.09G054900.01), INTRON(|||None|Vigan.09G054800.01)Vigna nepalensis
7431750GT37137.770.16DOWNSTREAM(|3646||None|Vigan.09G054900.01), INTRON(|||None|Vigan.09G054800.01)Vigna nepalensis
7431766GA40122.770.17DOWNSTREAM(|3630||None|Vigan.09G054900.01), INTRON(|||None|Vigan.09G054800.01)Vigna nepalensis
7431770CT432121.771.00DOWNSTREAM(|3626||None|Vigan.09G054900.01), INTRON(|||None|Vigan.09G054800.01)Vigna nepalensis
7431793GA55469.770.31DOWNSTREAM(|3603||None|Vigan.09G054900.01), INTRON(|||None|Vigan.09G054800.01)Vigna nepalensis
7431834GA52961.770.50DOWNSTREAM(|3562||None|Vigan.09G054900.01), INTRON(|||None|Vigan.09G054800.01)Vigna nepalensis
7431838CT51961.770.49DOWNSTREAM(|3558||None|Vigan.09G054900.01), INTRON(|||None|Vigan.09G054800.01)Vigna nepalensis
7431839TC512330.771.00DOWNSTREAM(|3557||None|Vigan.09G054900.01), INTRON(|||None|Vigan.09G054800.01)Vigna nepalensis
7431874CT40592.770.50DOWNSTREAM(|3522||None|Vigan.09G054900.01), INTRON(|||None|Vigan.09G054800.01)Vigna nepalensis
7431884TC411613.771.00DOWNSTREAM(|3512||None|Vigan.09G054900.01), INTRON(|||None|Vigan.09G054800.01)Vigna nepalensis
7432005AG672324.771.00DOWNSTREAM(|3391||None|Vigan.09G054900.01), INTRON(|||None|Vigan.09G054800.01)Vigna nepalensis
7432070GA71570.770.32DOWNSTREAM(|3326||None|Vigan.09G054900.01), INTRON(|||None|Vigan.09G054800.01)Vigna nepalensis
7432115AG471611.771.00DOWNSTREAM(|3281||None|Vigan.09G054900.01), INTRON(|||None|Vigan.09G054800.01)Vigna nepalensis
7432262GA81553.770.28DOWNSTREAM(|3134||None|Vigan.09G054900.01), INTRON(|||None|Vigan.09G054800.01)Vigna nepalensis
7432340GT59134.770.15DOWNSTREAM(|3056||None|Vigan.09G054900.01), INTRON(|||None|Vigan.09G054800.01)Vigna nepalensis
7432383GT58300.770.26DOWNSTREAM(|3013||None|Vigan.09G054900.01), INTRON(|||None|Vigan.09G054800.01)Vigna nepalensis
7432433GA43878.770.70DOWNSTREAM(|2963||None|Vigan.09G054900.01), INTRON(|||None|Vigan.09G054800.01)Vigna nepalensis
7432454AG341212.771.00DOWNSTREAM(|2942||None|Vigan.09G054900.01), INTRON(|||None|Vigan.09G054800.01)Vigna nepalensis
7432553CT80576.770.31DOWNSTREAM(|2843||None|Vigan.09G054900.01), INTRON(|||None|Vigan.09G054800.01)Vigna nepalensis
7432913CT64551.770.31DOWNSTREAM(|2483||None|Vigan.09G054900.01), INTRON(|||None|Vigan.09G054800.01)Vigna nepalensis
7432927CT61369.770.28DOWNSTREAM(|2469||None|Vigan.09G054900.01), INTRON(|||None|Vigan.09G054800.01)Vigna nepalensis
7432928GA622722.771.00DOWNSTREAM(|2468||None|Vigan.09G054900.01), INTRON(|||None|Vigan.09G054800.01)Vigna nepalensis
7432982GA991041.770.30DOWNSTREAM(|2414||None|Vigan.09G054900.01), INTRON(|||None|Vigan.09G054800.01)Vigna nepalensis
7433275AG97878.770.34DOWNSTREAM(|2121||None|Vigan.09G054900.01), INTRON(|||None|Vigan.09G054800.01)Vigna nepalensis
7433445TC772868.771.00DOWNSTREAM(|1951||None|Vigan.09G054900.01), INTRON(|||None|Vigan.09G054800.01)Vigna nepalensis
7433490TC99761.770.28DOWNSTREAM(|1906||None|Vigan.09G054900.01), INTRON(|||None|Vigan.09G054800.01)Vigna nepalensis
7434168AC713097.771.00DOWNSTREAM(|1228||None|Vigan.09G054900.01), INTRON(|||None|Vigan.09G054800.01)Vigna nepalensis
7434200AT621448.770.69DOWNSTREAM(|1196||None|Vigan.09G054900.01), INTRON(|||None|Vigan.09G054800.01)Vigna nepalensis
7434245GT651327.770.65DOWNSTREAM(|1151||None|Vigan.09G054900.01), INTRON(|||None|Vigan.09G054800.01)Vigna nepalensis
7434314GT34735.770.62DOWNSTREAM(|1082||None|Vigan.09G054900.01), INTRON(|||None|Vigan.09G054800.01)Vigna nepalensis
7434330GA24549.770.58DOWNSTREAM(|1066||None|Vigan.09G054900.01), INTRON(|||None|Vigan.09G054800.01)Vigna nepalensis
7434334CT22904.771.00DOWNSTREAM(|1062||None|Vigan.09G054900.01), INTRON(|||None|Vigan.09G054800.01)Vigna nepalensis
7434408CT17612.771.00DOWNSTREAM(|988||None|Vigan.09G054900.01), INTRON(|||None|Vigan.09G054800.01)Vigna nepalensis
7434434CA25956.771.00DOWNSTREAM(|962||None|Vigan.09G054900.01), INTRON(|||None|Vigan.09G054800.01)Vigna nepalensis
7434532AT20770.771.00DOWNSTREAM(|864||None|Vigan.09G054900.01), INTRON(|||None|Vigan.09G054800.01)Vigna nepalensis
7434587CT251134.771.00DOWNSTREAM(|809||None|Vigan.09G054900.01), INTRON(|||None|Vigan.09G054800.01)Vigna nepalensis
7434609AT341444.771.00DOWNSTREAM(|787||None|Vigan.09G054900.01), INTRON(|||None|Vigan.09G054800.01)Vigna nepalensis
7434659GA632447.771.00DOWNSTREAM(|737||None|Vigan.09G054900.01), INTRON(|||None|Vigan.09G054800.01)Vigna nepalensis
7434773GC431906.771.00DOWNSTREAM(|623||None|Vigan.09G054900.01), INTRON(|||None|Vigan.09G054800.01)Vigna nepalensis
7434775CG432018.771.00DOWNSTREAM(|621||None|Vigan.09G054900.01), INTRON(|||None|Vigan.09G054800.01)Vigna nepalensis
7434792CT401785.771.00DOWNSTREAM(|604||None|Vigan.09G054900.01), INTRON(|||None|Vigan.09G054800.01)Vigna nepalensis
7434877GA19794.771.00DOWNSTREAM(|519||None|Vigan.09G054900.01), INTRON(|||None|Vigan.09G054800.01)Vigna nepalensis
7434920AC13516.771.00DOWNSTREAM(|476||None|Vigan.09G054900.01), INTRON(|||None|Vigan.09G054800.01)Vigna nepalensis
7434944CG9340.781.00DOWNSTREAM(|452||None|Vigan.09G054900.01), INTRON(|||None|Vigan.09G054800.01)Vigna nepalensis
7434999TA11463.771.00DOWNSTREAM(|397||None|Vigan.09G054900.01), INTRON(|||None|Vigan.09G054800.01)Vigna nepalensis
7435009TG10421.771.00DOWNSTREAM(|387||None|Vigan.09G054900.01), INTRON(|||None|Vigan.09G054800.01)Vigna nepalensis
7435018AG9421.771.00DOWNSTREAM(|378||None|Vigan.09G054900.01), INTRON(|||None|Vigan.09G054800.01)Vigna nepalensis
7435031CA7286.81.00DOWNSTREAM(|365||None|Vigan.09G054900.01), INTRON(|||None|Vigan.09G054800.01)Vigna nepalensis
7435036TG7286.81.00DOWNSTREAM(|360||None|Vigan.09G054900.01), INTRON(|||None|Vigan.09G054800.01)Vigna nepalensis
7435054TG9306.781.00DOWNSTREAM(|342||None|Vigan.09G054900.01), INTRON(|||None|Vigan.09G054800.01)Vigna nepalensis
7435109TG9308.781.00DOWNSTREAM(|287||None|Vigan.09G054900.01), INTRON(|||None|Vigan.09G054800.01)Vigna nepalensis
7435145TA23797.771.00DOWNSTREAM(|251||None|Vigan.09G054900.01), INTRON(|||None|Vigan.09G054800.01)Vigna nepalensis
7435205CT391404.771.00DOWNSTREAM(|191||None|Vigan.09G054900.01), INTRON(|||None|Vigan.09G054800.01)Vigna nepalensis
7435255GA22650.771.00DOWNSTREAM(|141||None|Vigan.09G054900.01), INTRON(|||None|Vigan.09G054800.01)Vigna nepalensis
7435385AT361571.771.00DOWNSTREAM(|11||None|Vigan.09G054900.01), INTRON(|||None|Vigan.09G054800.01)Vigna nepalensis
7435392CT361638.771.00DOWNSTREAM(|4||None|Vigan.09G054900.01), INTRON(|||None|Vigan.09G054800.01)Vigna nepalensis
7435590TC381328.771.00INTRON(|||None|Vigan.09G054800.01), UTR_3_PRIME(|44680||None|Vigan.09G054900.01)Vigna nepalensis
7435626GA451696.771.00INTRON(|||None|Vigan.09G054800.01), UTR_3_PRIME(|44644||None|Vigan.09G054900.01)Vigna nepalensis
7435688AT361308.771.00INTRON(|||None|Vigan.09G054800.01), UTR_3_PRIME(|44582||None|Vigan.09G054900.01)Vigna nepalensis
7435924TC5171.91.00UTR_3_PRIME(|198||None|Vigan.09G054800.01), UTR_3_PRIME(|44346||None|Vigan.09G054900.01)Vigna nepalensis
7436116GT7286.81.00INTRON(|||None|Vigan.09G054800.01), UTR_3_PRIME(|44154||None|Vigan.09G054900.01)Vigna nepalensis
7436300GA341182.771.00INTRON(|||None|Vigan.09G054800.01), UTR_3_PRIME(|43970||None|Vigan.09G054900.01)Vigna nepalensis
7436552TA13541.771.00INTRON(|||None|Vigan.09G054800.01), UTR_3_PRIME(|43718||None|Vigan.09G054900.01)Vigna nepalensis
7436733GC47868.770.70INTRON(|||None|Vigan.09G054800.01), UTR_3_PRIME(|43537||None|Vigan.09G054900.01)Vigna nepalensis
7437034AG662913.771.00INTRON(|||None|Vigan.09G054800.01), UTR_3_PRIME(|43236||None|Vigan.09G054900.01)Vigna nepalensis
7437041CG652900.771.00INTRON(|||None|Vigan.09G054800.01), UTR_3_PRIME(|43229||None|Vigan.09G054900.01)Vigna nepalensis
7437167AG632374.771.00INTRON(|||None|Vigan.09G054800.01), UTR_3_PRIME(|43103||None|Vigan.09G054900.01)Vigna nepalensis
7437247GA281147.771.00INTRON(|||None|Vigan.09G054800.01), UTR_3_PRIME(|43023||None|Vigan.09G054900.01)Vigna nepalensis
7437269GT251017.771.00INTRON(|||None|Vigan.09G054800.01), UTR_3_PRIME(|43001||None|Vigan.09G054900.01)Vigna nepalensis
7437778AT261040.771.00INTRON(|||None|Vigan.09G054800.01), INTRON(|||None|Vigan.09G054900.01)Vigna nepalensis
7438639GA24373.770.54INTRON(|||None|Vigan.09G054800.01), INTRON(|||None|Vigan.09G054900.01)Vigna nepalensis
7438654CT26353.770.46INTRON(|||None|Vigan.09G054800.01), INTRON(|||None|Vigan.09G054900.01)Vigna nepalensis
7438670GA29104.770.24INTRON(|||None|Vigan.09G054800.01), INTRON(|||None|Vigan.09G054900.01)Vigna nepalensis
7438696TC251016.280.92INTRON(|||None|Vigan.09G054800.01), INTRON(|||None|Vigan.09G054900.01)Vigna nepalensis
7438712GT23944.780.96INTRON(|||None|Vigan.09G054800.01), INTRON(|||None|Vigan.09G054900.01)Vigna nepalensis
7438731CT25240.770.36INTRON(|||None|Vigan.09G054800.01), INTRON(|||None|Vigan.09G054900.01)Vigna nepalensis
7438751GA31513.770.55INTRON(|||None|Vigan.09G054800.01), INTRON(|||None|Vigan.09G054900.01)Vigna nepalensis
7438889TA13465.771.00INTRON(|||None|Vigan.09G054800.01), INTRON(|||None|Vigan.09G054900.01)Vigna nepalensis
7438997CA22166.770.32INTRON(|||None|Vigan.09G054800.01), INTRON(|||None|Vigan.09G054900.01)Vigna nepalensis
7439054GT6194.841.00INTRON(|||None|Vigan.09G054800.01), INTRON(|||None|Vigan.09G054900.01)Vigna nepalensis
7442889TA14555.771.00INTRON(|||None|Vigan.09G054800.01), INTRON(|||None|Vigan.09G054900.01)Vigna nepalensis
7443147CT10288.771.00INTRON(|||None|Vigan.09G054800.01), INTRON(|||None|Vigan.09G054900.01)Vigna nepalensis
7443475CT12348.771.00INTRON(|||None|Vigan.09G054800.01), INTRON(|||None|Vigan.09G054900.01)Vigna nepalensis
7443510AT14455.771.00INTRON(|||None|Vigan.09G054800.01), INTRON(|||None|Vigan.09G054900.01)Vigna nepalensis
7443580AG351331.771.00INTRON(|||None|Vigan.09G054800.01), INTRON(|||None|Vigan.09G054900.01)Vigna nepalensis
7443669TC19715.771.00INTRON(|||None|Vigan.09G054800.01), INTRON(|||None|Vigan.09G054900.01)Vigna nepalensis
7443736TA7313.781.00INTRON(|||None|Vigan.09G054800.01), INTRON(|||None|Vigan.09G054900.01)Vigna nepalensis
7443742AG6276.81.00INTRON(|||None|Vigan.09G054800.01), INTRON(|||None|Vigan.09G054900.01)Vigna nepalensis
7443781TA5188.91.00INTRON(|||None|Vigan.09G054800.01), INTRON(|||None|Vigan.09G054900.01)Vigna nepalensis
7444454CT42292.770.31INTRON(|||None|Vigan.09G054800.01), INTRON(|||None|Vigan.09G054900.01)Vigna nepalensis
7444534CT531105.770.68INTRON(|||None|Vigan.09G054800.01), INTRON(|||None|Vigan.09G054900.01)Vigna nepalensis
7444575CA31937.770.81INTRON(|||None|Vigan.09G054800.01), INTRON(|||None|Vigan.09G054900.01)Vigna nepalensis
7444595CT22958.771.00INTRON(|||None|Vigan.09G054800.01), INTRON(|||None|Vigan.09G054900.01)Vigna nepalensis
7444600CT22755.770.86INTRON(|||None|Vigan.09G054800.01), INTRON(|||None|Vigan.09G054900.01)Vigna nepalensis
7444601TG22755.770.86INTRON(|||None|Vigan.09G054800.01), INTRON(|||None|Vigan.09G054900.01)Vigna nepalensis
7444785CT23882.770.96INTRON(|||None|Vigan.09G054800.01), INTRON(|||None|Vigan.09G054900.01)Vigna nepalensis
7444849TG18517.770.94INTRON(|||None|Vigan.09G054800.01), INTRON(|||None|Vigan.09G054900.01)Vigna nepalensis

Indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
7428456GGT12284.731.00INTRON(|||None|Vigan.09G054800.01), UPSTREAM(|3953||None|Vigan.09G054700.01)Vigna nepalensis
7428620ATTA431849.730.98INTRON(|||None|Vigan.09G054800.01), UPSTREAM(|4117||None|Vigan.09G054700.01)Vigna nepalensis
7430304CAC15563.731.00INTRON(|||None|Vigan.09G054800.01)Vigna nepalensis
7431673AGA33239.730.33DOWNSTREAM(|3722||None|Vigan.09G054900.01), INTRON(|||None|Vigan.09G054800.01)Vigna nepalensis
7432938TGT72575.730.29DOWNSTREAM(|2457||None|Vigan.09G054900.01), INTRON(|||None|Vigan.09G054800.01)Vigna nepalensis
7436113GGTTC6277.771.00INTRON(|||None|Vigan.09G054800.01), UTR_3_PRIME(|44156||None|Vigan.09G054900.01)Vigna nepalensis
7437655GTG361418.731.00INTRON(|||None|Vigan.09G054800.01), INTRON(|||None|Vigan.09G054900.01)Vigna nepalensis
7438689ATTA291036.730.86INTRON(|||None|Vigan.09G054800.01), INTRON(|||None|Vigan.09G054900.01)Vigna nepalensis
7438692GGAT281042.730.89INTRON(|||None|Vigan.09G054800.01), INTRON(|||None|Vigan.09G054900.01)Vigna nepalensis
7438948TTTGATGATGATCAAAACCTTCT30232.730.27INTRON(|||None|Vigan.09G054800.01), INTRON(|||None|Vigan.09G054900.01)Vigna nepalensis
7444521TAAAT,
TAA
161510.731.00INTRON(|||None|Vigan.09G054800.01), INTRON(|||None|Vigan.09G054900.01)Vigna nepalensis
7444764TTTTATGT19791.731.00INTRON(|||None|Vigan.09G054800.01), INTRON(|||None|Vigan.09G054900.01)Vigna nepalensis
7444771CAGCTC20816.730.95INTRON(|||None|Vigan.09G054800.01), INTRON(|||None|Vigan.09G054900.01)Vigna nepalensis