VIGGS:Variant information

Chr09:5535145 - 5540001

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
5536224	G	A	62	2440.77	1.00	INTRON(\|\|\|None\|Vigan.09G044700.01)	Vigna nepalensis
5536311	G	A	49	1920.77	1.00	INTRON(\|\|\|None\|Vigan.09G044700.01)	Vigna nepalensis
5536983	A	G	53	2077.77	1.00	INTRON(\|\|\|None\|Vigan.09G044700.01)	Vigna nepalensis
5537437	C	G	42	1636.77	1.00	INTRON(\|\|\|None\|Vigan.09G044700.01)	Vigna nepalensis
5537701	A	T	55	2079.77	1.00	INTRON(\|\|\|None\|Vigan.09G044700.01)	Vigna nepalensis
5537769	A	T	50	2281.77	1.00	INTRON(\|\|\|None\|Vigan.09G044700.01)	Vigna nepalensis
5537770	A	T	52	2281.77	1.00	INTRON(\|\|\|None\|Vigan.09G044700.01)	Vigna nepalensis
5539545	A	T	53	2225.77	1.00	UTR_5_PRIME(\|357\|\|None\|Vigan.09G044700.01)	Vigna nepalensis

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
5537959	CA	C	54	1611.73	1.00	INTRON(\|\|\|None\|Vigan.09G044700.01)	Vigna nepalensis
5538340	AGATAT	A	7	154.92	0.71	INTRON(\|\|\|None\|Vigan.09G044700.01)	Vigna nepalensis
5539033	CA	C	54	1649.73	1.00	INTRON(\|\|\|None\|Vigan.09G044700.01)	Vigna nepalensis
5539495	A	AT	51	1423.73	1.00	UTR_5_PRIME(\|308\|\|None\|Vigan.09G044700.01)	Vigna nepalensis
5539792	ATAT	A	57	2453.73	1.00	UTR_5_PRIME(\|605\|\|None\|Vigan.09G044700.01)	Vigna nepalensis

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
5538338	(AT)27	(AT)26	7	154.92	0.71	INTRON(\|\|\|None\|Vigan.09G044700.01)	Vigna nepalensis