VIGGS:Variant information

Chr09:3786369 - 3788677

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[SNPs] [Indels]

SNPs

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
3786923	A	T	41	1626.77	1.00	DOWNSTREAM(\|2640\|\|None\|Vigan.09G032800.01), INTRON(\|\|\|None\|Vigan.09G032900.01)	Vigna nepalensis
3786954	T	A	50	2265.77	1.00	DOWNSTREAM(\|2671\|\|None\|Vigan.09G032800.01), INTRON(\|\|\|None\|Vigan.09G032900.01)	Vigna nepalensis
3786957	C	A	50	2265.77	1.00	DOWNSTREAM(\|2674\|\|None\|Vigan.09G032800.01), INTRON(\|\|\|None\|Vigan.09G032900.01)	Vigna nepalensis
3787033	G	C	54	2100.77	1.00	DOWNSTREAM(\|2750\|\|None\|Vigan.09G032800.01), INTRON(\|\|\|None\|Vigan.09G032900.01)	Vigna nepalensis
3787062	T	G	59	2652.77	1.00	DOWNSTREAM(\|2779\|\|None\|Vigan.09G032800.01), INTRON(\|\|\|None\|Vigan.09G032900.01)	Vigna nepalensis
3787072	C	G	62	2806.77	1.00	DOWNSTREAM(\|2789\|\|None\|Vigan.09G032800.01), INTRON(\|\|\|None\|Vigan.09G032900.01)	Vigna nepalensis
3787078	G	T	59	2706.77	1.00	DOWNSTREAM(\|2795\|\|None\|Vigan.09G032800.01), INTRON(\|\|\|None\|Vigan.09G032900.01)	Vigna nepalensis
3787085	A	T	61	2677.77	1.00	DOWNSTREAM(\|2802\|\|None\|Vigan.09G032800.01), INTRON(\|\|\|None\|Vigan.09G032900.01)	Vigna nepalensis
3787112	C	A	63	2572.77	1.00	DOWNSTREAM(\|2829\|\|None\|Vigan.09G032800.01), INTRON(\|\|\|None\|Vigan.09G032900.01)	Vigna nepalensis
3787175	A	T	47	1984.77	1.00	DOWNSTREAM(\|2892\|\|None\|Vigan.09G032800.01), INTRON(\|\|\|None\|Vigan.09G032900.01)	Vigna nepalensis
3787317	C	T	55	2187.77	1.00	DOWNSTREAM(\|3034\|\|None\|Vigan.09G032800.01), INTRON(\|\|\|None\|Vigan.09G032900.01)	Vigna nepalensis
3787516	C	G	58	2309.77	1.00	DOWNSTREAM(\|3233\|\|None\|Vigan.09G032800.01), INTRON(\|\|\|None\|Vigan.09G032900.01)	Vigna nepalensis
3787588	A	G	45	1971.77	1.00	DOWNSTREAM(\|3305\|\|None\|Vigan.09G032800.01), INTRON(\|\|\|None\|Vigan.09G032900.01)	Vigna nepalensis
3787657	A	T	55	2357.77	1.00	DOWNSTREAM(\|3374\|\|None\|Vigan.09G032800.01), INTRON(\|\|\|None\|Vigan.09G032900.01)	Vigna nepalensis
3787673	C	T	54	2331.77	1.00	DOWNSTREAM(\|3390\|\|None\|Vigan.09G032800.01), INTRON(\|\|\|None\|Vigan.09G032900.01)	Vigna nepalensis
3788454	G	C	50	2025.77	1.00	DOWNSTREAM(\|4171\|\|None\|Vigan.09G032800.01), INTRON(\|\|\|None\|Vigan.09G032900.01)	Vigna nepalensis
3788669	G	A	52	2086.77	1.00	DOWNSTREAM(\|4386\|\|None\|Vigan.09G032800.01), UTR_5_PRIME(\|52\|\|None\|Vigan.09G032900.01)	Vigna nepalensis

Indels

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
3786372	T	TA	36	1601.73	1.00	DOWNSTREAM(\|2090\|\|None\|Vigan.09G032800.01), UTR_3_PRIME(\|193\|\|None\|Vigan.09G032900.01)	Vigna nepalensis
3787347	AT	A	53	1576.73	1.00	DOWNSTREAM(\|3065\|\|None\|Vigan.09G032800.01), INTRON(\|\|\|None\|Vigan.09G032900.01)	Vigna nepalensis
3787539	ATATTT	A	47	2068.73	1.00	DOWNSTREAM(\|3257\|\|None\|Vigan.09G032800.01), INTRON(\|\|\|None\|Vigan.09G032900.01)	Vigna nepalensis
3787565	GA	G	45	1867.73	1.00	DOWNSTREAM(\|3283\|\|None\|Vigan.09G032800.01), INTRON(\|\|\|None\|Vigan.09G032900.01)	Vigna nepalensis
3788310	A	AAC	49	2084.73	1.00	DOWNSTREAM(\|4028\|\|None\|Vigan.09G032800.01), INTRON(\|\|\|None\|Vigan.09G032900.01)	Vigna nepalensis
3788466	A	AT	44	1206.73	0.98	DOWNSTREAM(\|4184\|\|None\|Vigan.09G032800.01), INTRON(\|\|\|None\|Vigan.09G032900.01)	Vigna nepalensis