Variant information

Chr09:31935568 - 31937500

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 [SNPs] [Indels] [SSR-associated indels]

SNPs

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
31935595CG753082.771.00START_GAINED(|||None|Vigan.09G176400.01), UTR_5_PRIME(|21||None|Vigan.09G176400.01)Vigna nepalensis
31935687GT592598.771.00NON_SYNONYMOUS_CODING(MISSENSE|ttG/ttT|L24F|None|Vigan.09G176400.01)Vigna nepalensis
31935698GC552495.771.00NON_SYNONYMOUS_CODING(MISSENSE|cGt/cCt|R28P|None|Vigan.09G176400.01)Vigna nepalensis
31935867AC662474.771.00NON_SYNONYMOUS_CODING(MISSENSE|caA/caC|Q84H|None|Vigan.09G176400.01)Vigna nepalensis
31936348TC552424.771.00INTRON(|||None|Vigan.09G176400.01)Vigna nepalensis
31936404GC803333.771.00INTRON(|||None|Vigan.09G176400.01)Vigna nepalensis
31936444CT703030.771.00INTRON(|||None|Vigan.09G176400.01)Vigna nepalensis
31936493TG672893.771.00INTRON(|||None|Vigan.09G176400.01)Vigna nepalensis
31936565AC773087.771.00INTRON(|||None|Vigan.09G176400.01)Vigna nepalensis
31936781TC652580.771.00NON_SYNONYMOUS_CODING(MISSENSE|gTa/gCa|V254A|None|Vigan.09G176400.01), SPLICE_SITE_REGION(|||None|Vigan.09G176400.01)Vigna nepalensis
31937399GA552350.771.00UTR_3_PRIME(|198||None|Vigan.09G176400.01)Vigna nepalensis
31937458CT712728.771.00UTR_3_PRIME(|257||None|Vigan.09G176400.01)Vigna nepalensis

Indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
31936473TTTGG693337.731.00INTRON(|||None|Vigan.09G176400.01)Vigna nepalensis
31936845GAG571824.731.00INTRON(|||None|Vigan.09G176400.01)Vigna nepalensis
31937254CTC401078.731.00UTR_3_PRIME(|54||None|Vigan.09G176400.01)Vigna nepalensis

SSR-associated indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
31936302(TA)13(TA)6321444.731.00INTRON(|||None|Vigan.09G176400.01), SPLICE_SITE_DONOR(|||None|Vigan.09G176400.01), SPLICE_SITE_REGION(|||None|Vigan.09G176400.01)Vigna nepalensis